Wall clock time and date at job start Wed Apr 1 2020 04:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35842 * 120.90206 * 2 1 4 4 C 1.41010 * 119.82167 * 179.97438 * 3 2 1 5 5 O 1.21793 * 119.15464 * 180.02562 * 4 3 2 6 6 O 1.34227 * 121.68846 * 359.72687 * 4 3 2 7 7 C 1.35018 * 121.46131 * 0.56618 * 6 4 3 8 8 C 1.38682 * 120.73984 * 179.71970 * 7 6 4 9 9 C 1.38512 * 119.78975 * 179.68114 * 8 7 6 10 10 O 1.35750 * 119.72819 * 179.97438 * 9 8 7 11 11 C 1.42893 * 117.00113 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47374 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.46994 * 64.99483 * 12 11 10 14 14 C 1.36935 * 120.00503 * 270.00002 * 13 12 11 15 15 H 1.08002 * 120.00355 * 322.27072 * 14 13 12 16 16 C 1.38818 * 120.00177 * 142.26413 * 14 13 12 17 17 N 1.31617 * 119.99985 * 156.84223 * 16 14 13 18 18 Si 1.86799 * 119.99786 * 336.84649 * 16 14 13 19 19 H 1.48491 * 109.47443 * 95.21392 * 18 16 14 20 20 H 1.48500 * 109.46817 * 215.21495 * 18 16 14 21 21 H 1.48500 * 109.47166 * 335.21374 * 18 16 14 22 22 C 1.46503 * 119.99797 * 90.00426 * 13 12 11 23 23 C 1.50707 * 109.47191 * 82.64112 * 22 13 12 24 24 O 1.20829 * 119.99485 * 0.02562 * 23 22 13 25 25 O 1.34222 * 120.00222 * 180.02562 * 23 22 13 26 26 C 1.39370 * 120.54349 * 0.04247 * 9 8 7 27 27 C 1.36460 * 120.43267 * 359.97438 * 26 9 8 28 28 C 1.39965 * 119.79055 * 359.97438 * 27 26 9 29 29 H 1.09001 * 109.47022 * 270.01625 * 1 2 3 30 30 H 1.09003 * 109.47400 * 30.01858 * 1 2 3 31 31 H 1.08998 * 109.47345 * 150.02040 * 1 2 3 32 32 H 1.07995 * 120.09242 * 359.96343 * 3 2 1 33 33 H 1.08001 * 120.10029 * 359.68309 * 8 7 6 34 34 H 1.09000 * 109.47431 * 299.99629 * 11 10 9 35 35 H 1.09001 * 109.47299 * 59.99918 * 11 10 9 36 36 H 1.09000 * 109.47471 * 185.00372 * 12 11 10 37 37 H 1.09005 * 109.46735 * 304.99991 * 12 11 10 38 38 H 0.97001 * 119.99728 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47458 * 202.63937 * 22 13 12 40 40 H 1.08998 * 109.47237 * 322.64291 * 22 13 12 41 41 H 0.96703 * 116.99960 * 180.02562 * 25 23 22 42 42 H 1.08003 * 119.78229 * 179.97438 * 26 9 8 43 43 H 1.07995 * 120.10407 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.1656 0.0000 4 6 3.6145 1.1390 0.0005 5 8 4.2278 2.1912 0.0010 6 8 4.2979 -0.0162 0.0065 7 6 3.6655 -1.2092 0.0009 8 6 4.3866 -2.3937 0.0014 9 6 3.7177 -3.6066 0.0023 10 8 4.4248 -4.7654 0.0022 11 6 3.6759 -5.9824 0.0025 12 6 4.6372 -7.1728 0.0031 13 7 5.3981 -7.1855 1.2548 14 6 6.5899 -6.5164 1.3386 15 1 7.2644 -6.5070 0.4951 16 6 6.9312 -5.8501 2.5076 17 7 8.1953 -5.6050 2.7802 18 14 5.5965 -5.3015 3.6937 19 1 5.4238 -6.3272 4.7534 20 1 5.9859 -4.0096 4.3138 21 1 4.3186 -5.1314 2.9565 22 6 4.8839 -7.9141 2.4172 23 6 5.2418 -9.3728 2.2943 24 8 5.8632 -9.7636 1.3345 25 8 4.8705 -10.2379 3.2510 26 6 2.3246 -3.6471 0.0018 27 6 1.5995 -2.4911 0.0010 28 6 2.2590 -1.2566 0.0012 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6810 2.1101 -0.0006 33 1 5.4664 -2.3705 0.0011 34 1 3.0482 -6.0225 0.8927 35 1 3.0476 -6.0227 -0.8872 36 1 4.0690 -8.0987 -0.0863 37 1 5.3241 -7.0854 -0.8388 38 1 8.4338 -5.1397 3.5973 39 1 5.3263 -7.5068 3.3263 40 1 3.7999 -7.8085 2.4618 41 1 5.1233 -11.1632 3.1284 42 1 1.8156 -4.5997 0.0020 43 1 0.5202 -2.5286 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832859208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:50 Heat of formation + Delta-G solvation = -123.881031 kcal Electronic energy + Delta-G solvation = -30313.093745 eV Core-core repulsion = 25904.916141 eV Total energy + Delta-G solvation = -4408.177605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90823 -39.89852 -39.47857 -38.11136 -37.00934 -36.19788 -35.30328 -34.93350 -32.01460 -31.12940 -30.04406 -29.15605 -28.81971 -27.31796 -24.79935 -23.60493 -23.42024 -22.17952 -21.69572 -20.37953 -19.43718 -18.35129 -17.53963 -17.47207 -17.21613 -16.79851 -16.75918 -16.11109 -15.71191 -15.41175 -15.32169 -15.08768 -14.64064 -14.29392 -14.13756 -13.94158 -13.90727 -13.79683 -13.32785 -13.07457 -12.96087 -12.78476 -12.64397 -12.47118 -12.14966 -11.94941 -11.84191 -11.61774 -11.26689 -10.97052 -10.91386 -10.74470 -10.62010 -10.39242 -10.32211 -9.87974 -9.83587 -9.72742 -8.88007 -8.69795 -8.01878 -7.20525 -6.13459 -3.58187 0.17953 0.98114 1.51057 2.29728 2.78909 2.92148 3.15721 3.33942 3.37480 3.48316 3.62300 3.63682 4.07058 4.08278 4.23145 4.35635 4.60983 4.66031 4.74756 4.94825 5.05369 5.08441 5.13752 5.20477 5.32063 5.36536 5.47262 5.54148 5.59711 5.67637 5.71575 5.75057 5.89452 5.98856 6.00381 6.07502 6.09493 6.17523 6.32360 6.47829 7.07544 7.17365 7.46979 7.51875 7.79849 8.21076 8.54623 8.78025 9.51099 9.80660 11.01214 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002999 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.335450 B = 9333.544115 C =10155.365811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.049 3.951 3 C -0.281 4.281 4 C 0.513 3.487 5 O -0.475 6.475 6 O -0.269 6.269 7 C 0.192 3.808 8 C -0.181 4.181 9 C 0.206 3.794 10 O -0.260 6.260 11 C 0.034 3.966 12 C 0.150 3.850 13 N -0.567 5.567 14 C -0.264 4.264 15 H 0.085 0.915 16 C 0.045 3.955 17 N -0.885 5.885 18 Si 0.862 3.138 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.264 1.264 22 C 0.138 3.862 23 C 0.442 3.558 24 O -0.506 6.506 25 O -0.535 6.535 26 C -0.233 4.233 27 C -0.016 4.016 28 C -0.212 4.212 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.266 0.734 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.391 0.609 42 H 0.139 0.861 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.912 2.959 -4.650 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.048 3.952 3 C -0.300 4.300 4 C 0.363 3.637 5 O -0.364 6.364 6 O -0.181 6.181 7 C 0.146 3.854 8 C -0.201 4.201 9 C 0.157 3.843 10 O -0.170 6.170 11 C -0.044 4.044 12 C 0.024 3.976 13 N -0.287 5.287 14 C -0.392 4.392 15 H 0.103 0.897 16 C -0.157 4.157 17 N -0.525 5.525 18 Si 0.691 3.309 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.188 1.188 22 C 0.008 3.992 23 C 0.281 3.719 24 O -0.392 6.392 25 O -0.346 6.346 26 C -0.252 4.252 27 C -0.034 4.034 28 C -0.213 4.213 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.248 0.752 42 H 0.157 0.843 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.959 3.830 -4.788 19.926 hybrid contribution -0.720 -0.319 0.848 1.157 sum -19.679 3.511 -3.940 20.374 Atomic orbital electron populations 1.21000 0.89363 1.04172 1.03805 1.21470 0.96601 0.91122 0.86046 1.22231 0.92903 1.00118 1.14736 1.19159 0.88187 0.81161 0.75217 1.90960 1.72181 1.25769 1.47537 1.83561 1.43406 1.13689 1.77413 1.18553 0.89293 0.83013 0.94494 1.19605 1.02045 0.86758 1.11649 1.19046 0.89806 0.87300 0.88177 1.86449 1.34392 1.11457 1.84684 1.23985 0.96226 0.84130 1.00028 1.21123 0.93548 0.92201 0.90730 1.43836 1.23598 1.52931 1.08325 1.18704 0.92588 1.25765 1.02123 0.89717 1.25432 0.95440 0.97104 0.97715 1.69868 1.15726 1.41431 1.25431 0.87175 0.84302 0.78480 0.80988 1.21278 1.22131 1.18842 1.21301 0.99214 0.83850 0.94818 1.26231 0.75804 0.90673 0.79212 1.90623 1.36874 1.79137 1.32543 1.84688 1.75479 1.22969 1.51493 1.21114 0.93024 1.00015 1.11017 1.20597 0.99808 0.89898 0.93072 1.18801 0.91575 0.94303 1.16591 0.89227 0.89987 0.90113 0.82449 0.82635 0.92329 0.92368 0.91278 0.90792 0.92354 0.88117 0.90317 0.75202 0.84281 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 9.64 36.00 0.35 -0.35 16 2 C 0.05 0.48 6.08 -102.18 -0.62 -0.14 16 3 C -0.28 -3.21 9.62 -39.39 -0.38 -3.59 16 4 C 0.51 7.98 7.89 31.78 0.25 8.23 16 5 O -0.48 -8.74 17.91 -19.60 -0.35 -9.09 16 6 O -0.27 -4.45 9.82 -20.79 -0.20 -4.66 16 7 C 0.19 2.88 6.76 -38.48 -0.26 2.62 16 8 C -0.18 -2.92 9.94 -39.32 -0.39 -3.32 16 9 C 0.21 3.18 6.69 -39.06 -0.26 2.92 16 10 O -0.26 -4.58 9.59 -18.96 -0.18 -4.76 16 11 C 0.03 0.49 5.07 37.16 0.19 0.67 16 12 C 0.15 2.54 6.00 -4.04 -0.02 2.52 16 13 N -0.57 -12.13 1.57 -174.60 -0.27 -12.41 16 14 C -0.26 -6.90 9.41 -15.06 -0.14 -7.04 16 15 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 16 C 0.05 1.23 5.24 -17.43 -0.09 1.14 16 17 N -0.89 -26.10 13.97 55.49 0.78 -25.33 16 18 Si 0.86 20.45 25.13 -169.99 -4.27 16.18 16 19 H -0.28 -6.50 6.67 56.52 0.38 -6.13 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 22 C 0.14 2.68 4.85 -5.19 -0.03 2.66 16 23 C 0.44 8.43 8.37 36.01 0.30 8.73 16 24 O -0.51 -11.14 17.10 -18.75 -0.32 -11.46 16 25 O -0.54 -8.18 13.42 -39.24 -0.53 -8.71 16 26 C -0.23 -2.75 8.96 -39.80 -0.36 -3.11 16 27 C -0.02 -0.16 9.36 -39.58 -0.37 -0.53 16 28 C -0.21 -2.55 5.87 -105.01 -0.62 -3.16 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 31 H 0.08 0.34 6.62 -51.93 -0.34 -0.01 16 32 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.16 2.64 8.06 -52.49 -0.42 2.22 16 34 H 0.06 0.80 7.64 -51.93 -0.40 0.41 16 35 H 0.06 0.62 7.64 -51.93 -0.40 0.23 16 36 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 37 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.10 2.18 3.75 -51.93 -0.19 1.99 16 40 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 41 H 0.39 4.19 9.10 45.56 0.41 4.61 16 42 H 0.14 1.32 6.24 -52.48 -0.33 0.99 16 43 H 0.14 0.87 6.52 -52.49 -0.34 0.53 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -35.22 369.62 -6.35 -41.57 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.12 Total: 4.84 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -2.45 Total: 8.25 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.50 Total: -37.73 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.58 Total: -38.68 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.27 Total: 16.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.22 -6.35 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832859208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.309 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds