Wall clock time and date at job start Wed Apr 1 2020 04:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35842 * 120.90206 * 2 1 4 4 C 1.41010 * 119.82167 * 179.97438 * 3 2 1 5 5 O 1.21793 * 119.15464 * 180.02562 * 4 3 2 6 6 O 1.34227 * 121.68846 * 359.72687 * 4 3 2 7 7 C 1.35018 * 121.46131 * 0.56618 * 6 4 3 8 8 C 1.38682 * 120.73984 * 179.71970 * 7 6 4 9 9 C 1.38512 * 119.78975 * 179.68114 * 8 7 6 10 10 O 1.35750 * 119.72819 * 179.97438 * 9 8 7 11 11 C 1.42893 * 117.00113 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47374 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.46994 * 64.99483 * 12 11 10 14 14 C 1.36935 * 120.00503 * 270.00002 * 13 12 11 15 15 H 1.08002 * 120.00355 * 322.27072 * 14 13 12 16 16 C 1.38818 * 120.00177 * 142.26413 * 14 13 12 17 17 N 1.31617 * 119.99985 * 156.84223 * 16 14 13 18 18 Si 1.86799 * 119.99786 * 336.84649 * 16 14 13 19 19 H 1.48491 * 109.47443 * 95.21392 * 18 16 14 20 20 H 1.48500 * 109.46817 * 215.21495 * 18 16 14 21 21 H 1.48500 * 109.47166 * 335.21374 * 18 16 14 22 22 C 1.46503 * 119.99797 * 90.00426 * 13 12 11 23 23 C 1.50707 * 109.47191 * 82.64112 * 22 13 12 24 24 O 1.20829 * 119.99485 * 0.02562 * 23 22 13 25 25 O 1.34222 * 120.00222 * 180.02562 * 23 22 13 26 26 C 1.39370 * 120.54349 * 0.04247 * 9 8 7 27 27 C 1.36460 * 120.43267 * 359.97438 * 26 9 8 28 28 C 1.39965 * 119.79055 * 359.97438 * 27 26 9 29 29 H 1.09001 * 109.47022 * 270.01625 * 1 2 3 30 30 H 1.09003 * 109.47400 * 30.01858 * 1 2 3 31 31 H 1.08998 * 109.47345 * 150.02040 * 1 2 3 32 32 H 1.07995 * 120.09242 * 359.96343 * 3 2 1 33 33 H 1.08001 * 120.10029 * 359.68309 * 8 7 6 34 34 H 1.09000 * 109.47431 * 299.99629 * 11 10 9 35 35 H 1.09001 * 109.47299 * 59.99918 * 11 10 9 36 36 H 1.09000 * 109.47471 * 185.00372 * 12 11 10 37 37 H 1.09005 * 109.46735 * 304.99991 * 12 11 10 38 38 H 0.97001 * 119.99728 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47458 * 202.63937 * 22 13 12 40 40 H 1.08998 * 109.47237 * 322.64291 * 22 13 12 41 41 H 0.96703 * 116.99960 * 180.02562 * 25 23 22 42 42 H 1.08003 * 119.78229 * 179.97438 * 26 9 8 43 43 H 1.07995 * 120.10407 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.1656 0.0000 4 6 3.6145 1.1390 0.0005 5 8 4.2278 2.1912 0.0010 6 8 4.2979 -0.0162 0.0065 7 6 3.6655 -1.2092 0.0009 8 6 4.3866 -2.3937 0.0014 9 6 3.7177 -3.6066 0.0023 10 8 4.4248 -4.7654 0.0022 11 6 3.6759 -5.9824 0.0025 12 6 4.6372 -7.1728 0.0031 13 7 5.3981 -7.1855 1.2548 14 6 6.5899 -6.5164 1.3386 15 1 7.2644 -6.5070 0.4951 16 6 6.9312 -5.8501 2.5076 17 7 8.1953 -5.6050 2.7802 18 14 5.5965 -5.3015 3.6937 19 1 5.4238 -6.3272 4.7534 20 1 5.9859 -4.0096 4.3138 21 1 4.3186 -5.1314 2.9565 22 6 4.8839 -7.9141 2.4172 23 6 5.2418 -9.3728 2.2943 24 8 5.8632 -9.7636 1.3345 25 8 4.8705 -10.2379 3.2510 26 6 2.3246 -3.6471 0.0018 27 6 1.5995 -2.4911 0.0010 28 6 2.2590 -1.2566 0.0012 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6810 2.1101 -0.0006 33 1 5.4664 -2.3705 0.0011 34 1 3.0482 -6.0225 0.8927 35 1 3.0476 -6.0227 -0.8872 36 1 4.0690 -8.0987 -0.0863 37 1 5.3241 -7.0854 -0.8388 38 1 8.4338 -5.1397 3.5973 39 1 5.3263 -7.5068 3.3263 40 1 3.7999 -7.8085 2.4618 41 1 5.1233 -11.1632 3.1284 42 1 1.8156 -4.5997 0.0020 43 1 0.5202 -2.5286 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832859208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:49 Heat of formation + Delta-G solvation = -148.321986 kcal Electronic energy + Delta-G solvation = -30314.153585 eV Core-core repulsion = 25904.916141 eV Total energy + Delta-G solvation = -4409.237444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.00600 -41.10955 -40.87350 -39.30333 -38.16331 -37.58787 -36.66999 -36.02630 -33.92103 -32.21724 -31.30566 -30.09750 -29.61103 -28.97326 -26.14469 -24.98857 -24.36795 -23.43840 -22.82941 -21.84511 -20.53505 -19.28733 -19.07302 -18.95828 -18.56880 -17.95700 -17.93975 -17.64779 -17.10752 -16.72558 -16.58187 -16.33854 -16.04470 -15.62393 -15.11239 -14.98759 -14.77438 -14.67781 -14.58949 -14.42333 -14.29605 -14.14408 -13.90673 -13.46846 -13.37140 -13.22943 -12.84682 -12.66253 -12.56651 -12.50447 -12.35496 -12.11403 -12.03934 -11.83361 -11.70355 -11.45040 -11.39061 -10.73219 -10.65806 -9.94015 -9.05669 -8.97476 -8.22289 -5.63715 -0.75156 -0.05213 0.51531 1.19596 1.25453 1.38467 1.43997 1.53228 1.75650 2.24383 2.38173 2.39171 2.63598 3.09421 3.14615 3.23425 3.30151 3.39351 3.74825 3.91259 4.10554 4.23551 4.26277 4.28677 4.36860 4.42132 4.43108 4.51679 4.57380 4.69838 4.71926 4.75297 4.82696 4.87108 4.97354 5.12313 5.17228 5.23150 5.32022 5.43478 5.78155 5.86452 6.06670 6.16553 6.36213 6.47262 6.84590 7.22724 7.53324 7.87306 8.97667 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002999 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.335450 B = 9333.544115 C =10155.365811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.078 3.922 3 C -0.298 4.298 4 C 0.500 3.500 5 O -0.526 6.526 6 O -0.301 6.301 7 C 0.168 3.832 8 C -0.217 4.217 9 C 0.191 3.809 10 O -0.304 6.304 11 C 0.034 3.966 12 C 0.145 3.855 13 N -0.582 5.582 14 C -0.241 4.241 15 H 0.031 0.969 16 C -0.017 4.017 17 N -0.949 5.949 18 Si 0.927 3.073 19 H -0.264 1.264 20 H -0.321 1.321 21 H -0.231 1.231 22 C 0.131 3.869 23 C 0.451 3.549 24 O -0.544 6.544 25 O -0.520 6.520 26 C -0.224 4.224 27 C 0.009 3.991 28 C -0.213 4.213 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.261 0.739 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.415 0.585 42 H 0.177 0.823 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.171 1.396 -4.190 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.077 3.923 3 C -0.317 4.317 4 C 0.354 3.646 5 O -0.419 6.419 6 O -0.213 6.213 7 C 0.123 3.877 8 C -0.237 4.237 9 C 0.142 3.858 10 O -0.215 6.215 11 C -0.042 4.042 12 C 0.020 3.980 13 N -0.303 5.303 14 C -0.371 4.371 15 H 0.049 0.951 16 C -0.213 4.213 17 N -0.592 5.592 18 Si 0.754 3.246 19 H -0.191 1.191 20 H -0.250 1.250 21 H -0.153 1.153 22 C 0.002 3.998 23 C 0.292 3.708 24 O -0.434 6.434 25 O -0.333 6.333 26 C -0.242 4.242 27 C -0.008 4.008 28 C -0.214 4.214 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.199 0.801 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.276 0.724 42 H 0.194 0.806 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -26.301 2.193 -4.337 26.746 hybrid contribution 1.543 -0.043 0.608 1.659 sum -24.758 2.150 -3.729 25.129 Atomic orbital electron populations 1.21240 0.84915 1.06437 1.05643 1.21944 0.99064 0.89017 0.82287 1.22290 0.90292 1.02243 1.16898 1.19945 0.89889 0.80221 0.74513 1.90910 1.73344 1.27107 1.50537 1.83463 1.45417 1.14803 1.77630 1.18809 0.91099 0.81806 0.95954 1.19555 1.00833 0.88663 1.14637 1.19203 0.91550 0.85845 0.89202 1.86389 1.36706 1.12938 1.85496 1.23997 0.95362 0.81729 1.03107 1.21270 0.93675 0.95237 0.87804 1.43858 1.22715 1.53397 1.10328 1.18376 0.93499 1.25209 1.00019 0.95142 1.26069 0.97258 0.97762 1.00194 1.70032 1.18378 1.44187 1.26617 0.86108 0.82428 0.76830 0.79185 1.19078 1.25012 1.15325 1.21377 1.01864 0.83672 0.92855 1.25871 0.74888 0.91117 0.78968 1.90631 1.38566 1.79885 1.34280 1.84582 1.74639 1.24463 1.49605 1.21495 0.90863 1.02388 1.09447 1.21219 1.02269 0.87832 0.89502 1.19224 0.90030 0.96698 1.15470 0.87067 0.88194 0.87497 0.80072 0.86304 0.90358 0.87778 0.88041 0.93253 0.92963 0.90117 0.85070 0.72388 0.80603 0.78673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.51 9.64 71.24 0.69 0.18 16 2 C 0.08 1.22 6.08 -18.28 -0.11 1.10 16 3 C -0.30 -6.41 9.62 22.39 0.22 -6.19 16 4 C 0.50 16.49 7.89 68.50 0.54 17.03 16 5 O -0.53 -20.89 17.91 18.97 0.34 -20.55 16 6 O -0.30 -10.88 9.82 14.70 0.14 -10.73 16 7 C 0.17 5.21 6.76 22.99 0.16 5.37 16 8 C -0.22 -7.51 9.94 22.44 0.22 -7.28 16 9 C 0.19 5.67 6.69 22.61 0.15 5.82 16 10 O -0.30 -10.54 9.59 -90.75 -0.87 -11.41 16 11 C 0.03 0.85 5.07 71.98 0.37 1.22 16 12 C 0.14 4.63 6.00 86.38 0.52 5.15 16 13 N -0.58 -24.42 1.57 -706.32 -1.11 -25.53 16 14 C -0.24 -13.22 9.41 84.04 0.79 -12.43 16 15 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 16 C -0.02 -0.94 5.24 84.86 0.44 -0.50 16 17 N -0.95 -59.89 13.97 21.65 0.30 -59.59 16 18 Si 0.93 42.92 25.13 68.60 1.72 44.64 16 19 H -0.26 -11.21 6.67 99.48 0.66 -10.55 16 20 H -0.32 -16.13 7.11 99.48 0.71 -15.42 16 21 H -0.23 -9.27 7.11 99.48 0.71 -8.56 16 22 C 0.13 4.70 4.85 85.63 0.42 5.11 16 23 C 0.45 16.03 8.37 71.24 0.60 16.62 16 24 O -0.54 -23.38 17.10 21.95 0.38 -23.00 16 25 O -0.52 -13.93 13.42 -51.34 -0.69 -14.62 16 26 C -0.22 -4.12 8.96 22.13 0.20 -3.92 16 27 C 0.01 0.13 9.36 22.27 0.21 0.33 16 28 C -0.21 -4.47 5.87 -20.11 -0.12 -4.59 16 29 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.10 0.18 8.10 -2.39 -0.02 0.16 16 31 H 0.11 -0.04 6.62 -2.39 -0.02 -0.05 16 32 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 34 H 0.08 1.66 7.64 -2.39 -0.02 1.64 16 35 H 0.10 1.65 7.64 -2.39 -0.02 1.63 16 36 H 0.10 2.56 8.07 -2.39 -0.02 2.55 16 37 H 0.05 1.79 8.04 -2.38 -0.02 1.77 16 38 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.08 3.29 3.75 -2.39 -0.01 3.28 16 40 H 0.13 3.34 8.12 -2.39 -0.02 3.33 16 41 H 0.42 7.36 9.10 -74.05 -0.67 6.68 16 42 H 0.18 1.95 6.24 -2.91 -0.02 1.93 16 43 H 0.20 0.56 6.52 -2.91 -0.02 0.54 16 Total: -1.00 -90.04 369.62 5.86 -84.18 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.37 Total: 13.59 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 5.28 Total: 23.02 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -0.81 Total: -85.12 kcal Atomic # 8 Polarization: -79.62 SS G_CDS: -0.70 Total: -80.32 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.72 Total: 44.64 kcal Total: -90.04 5.86 -84.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832859208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.145 kcal (2) G-P(sol) polarization free energy of solvation -90.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds