Wall clock time and date at job start Wed Apr 1 2020 04:27:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.35842 * 120.90206 * 2 1
4 4 C 1.41010 * 119.82167 * 179.97438 * 3 2 1
5 5 O 1.21793 * 119.15464 * 180.02562 * 4 3 2
6 6 O 1.34227 * 121.68846 * 359.72687 * 4 3 2
7 7 C 1.35018 * 121.46131 * 0.56618 * 6 4 3
8 8 C 1.38682 * 120.73984 * 179.71970 * 7 6 4
9 9 C 1.38512 * 119.78975 * 179.68114 * 8 7 6
10 10 O 1.35750 * 119.72819 * 179.97438 * 9 8 7
11 11 C 1.42893 * 117.00113 * 180.02562 * 10 9 8
12 12 C 1.53006 * 109.47374 * 180.02562 * 11 10 9
13 13 N 1.46494 * 109.46994 * 64.99483 * 12 11 10
14 14 C 1.36935 * 120.00503 * 270.00002 * 13 12 11
15 15 H 1.08002 * 120.00355 * 322.27072 * 14 13 12
16 16 C 1.38818 * 120.00177 * 142.26413 * 14 13 12
17 17 N 1.31617 * 119.99985 * 156.84223 * 16 14 13
18 18 Si 1.86799 * 119.99786 * 336.84649 * 16 14 13
19 19 H 1.48491 * 109.47443 * 95.21392 * 18 16 14
20 20 H 1.48500 * 109.46817 * 215.21495 * 18 16 14
21 21 H 1.48500 * 109.47166 * 335.21374 * 18 16 14
22 22 C 1.46503 * 119.99797 * 90.00426 * 13 12 11
23 23 C 1.50707 * 109.47191 * 82.64112 * 22 13 12
24 24 O 1.20829 * 119.99485 * 0.02562 * 23 22 13
25 25 O 1.34222 * 120.00222 * 180.02562 * 23 22 13
26 26 C 1.39370 * 120.54349 * 0.04247 * 9 8 7
27 27 C 1.36460 * 120.43267 * 359.97438 * 26 9 8
28 28 C 1.39965 * 119.79055 * 359.97438 * 27 26 9
29 29 H 1.09001 * 109.47022 * 270.01625 * 1 2 3
30 30 H 1.09003 * 109.47400 * 30.01858 * 1 2 3
31 31 H 1.08998 * 109.47345 * 150.02040 * 1 2 3
32 32 H 1.07995 * 120.09242 * 359.96343 * 3 2 1
33 33 H 1.08001 * 120.10029 * 359.68309 * 8 7 6
34 34 H 1.09000 * 109.47431 * 299.99629 * 11 10 9
35 35 H 1.09001 * 109.47299 * 59.99918 * 11 10 9
36 36 H 1.09000 * 109.47471 * 185.00372 * 12 11 10
37 37 H 1.09005 * 109.46735 * 304.99991 * 12 11 10
38 38 H 0.97001 * 119.99728 * 180.02562 * 17 16 14
39 39 H 1.09000 * 109.47458 * 202.63937 * 22 13 12
40 40 H 1.08998 * 109.47237 * 322.64291 * 22 13 12
41 41 H 0.96703 * 116.99960 * 180.02562 * 25 23 22
42 42 H 1.08003 * 119.78229 * 179.97438 * 26 9 8
43 43 H 1.07995 * 120.10407 * 179.97438 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2046 1.1656 0.0000
4 6 3.6145 1.1390 0.0005
5 8 4.2278 2.1912 0.0010
6 8 4.2979 -0.0162 0.0065
7 6 3.6655 -1.2092 0.0009
8 6 4.3866 -2.3937 0.0014
9 6 3.7177 -3.6066 0.0023
10 8 4.4248 -4.7654 0.0022
11 6 3.6759 -5.9824 0.0025
12 6 4.6372 -7.1728 0.0031
13 7 5.3981 -7.1855 1.2548
14 6 6.5899 -6.5164 1.3386
15 1 7.2644 -6.5070 0.4951
16 6 6.9312 -5.8501 2.5076
17 7 8.1953 -5.6050 2.7802
18 14 5.5965 -5.3015 3.6937
19 1 5.4238 -6.3272 4.7534
20 1 5.9859 -4.0096 4.3138
21 1 4.3186 -5.1314 2.9565
22 6 4.8839 -7.9141 2.4172
23 6 5.2418 -9.3728 2.2943
24 8 5.8632 -9.7636 1.3345
25 8 4.8705 -10.2379 3.2510
26 6 2.3246 -3.6471 0.0018
27 6 1.5995 -2.4911 0.0010
28 6 2.2590 -1.2566 0.0012
29 1 -0.3633 0.0003 1.0277
30 1 -0.3634 0.8898 -0.5141
31 1 -0.3634 -0.8901 -0.5135
32 1 1.6810 2.1101 -0.0006
33 1 5.4664 -2.3705 0.0011
34 1 3.0482 -6.0225 0.8927
35 1 3.0476 -6.0227 -0.8872
36 1 4.0690 -8.0987 -0.0863
37 1 5.3241 -7.0854 -0.8388
38 1 8.4338 -5.1397 3.5973
39 1 5.3263 -7.5068 3.3263
40 1 3.7999 -7.8085 2.4618
41 1 5.1233 -11.1632 3.1284
42 1 1.8156 -4.5997 0.0020
43 1 0.5202 -2.5286 0.0002
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000832859208.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:27:49
Heat of formation + Delta-G solvation = -148.321986 kcal
Electronic energy + Delta-G solvation = -30314.153585 eV
Core-core repulsion = 25904.916141 eV
Total energy + Delta-G solvation = -4409.237444 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.129 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-43.00600 -41.10955 -40.87350 -39.30333 -38.16331 -37.58787 -36.66999 -36.02630
-33.92103 -32.21724 -31.30566 -30.09750 -29.61103 -28.97326 -26.14469 -24.98857
-24.36795 -23.43840 -22.82941 -21.84511 -20.53505 -19.28733 -19.07302 -18.95828
-18.56880 -17.95700 -17.93975 -17.64779 -17.10752 -16.72558 -16.58187 -16.33854
-16.04470 -15.62393 -15.11239 -14.98759 -14.77438 -14.67781 -14.58949 -14.42333
-14.29605 -14.14408 -13.90673 -13.46846 -13.37140 -13.22943 -12.84682 -12.66253
-12.56651 -12.50447 -12.35496 -12.11403 -12.03934 -11.83361 -11.70355 -11.45040
-11.39061 -10.73219 -10.65806 -9.94015 -9.05669 -8.97476 -8.22289 -5.63715
-0.75156 -0.05213 0.51531 1.19596 1.25453 1.38467 1.43997 1.53228
1.75650 2.24383 2.38173 2.39171 2.63598 3.09421 3.14615 3.23425
3.30151 3.39351 3.74825 3.91259 4.10554 4.23551 4.26277 4.28677
4.36860 4.42132 4.43108 4.51679 4.57380 4.69838 4.71926 4.75297
4.82696 4.87108 4.97354 5.12313 5.17228 5.23150 5.32022 5.43478
5.78155 5.86452 6.06670 6.16553 6.36213 6.47262 6.84590 7.22724
7.53324 7.87306 8.97667
Molecular weight = 347.13amu
Principal moments of inertia in cm(-1)
A = 0.015938 B = 0.002999 C = 0.002757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1756.335450 B = 9333.544115 C =10155.365811
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.078 3.922
3 C -0.298 4.298
4 C 0.500 3.500
5 O -0.526 6.526
6 O -0.301 6.301
7 C 0.168 3.832
8 C -0.217 4.217
9 C 0.191 3.809
10 O -0.304 6.304
11 C 0.034 3.966
12 C 0.145 3.855
13 N -0.582 5.582
14 C -0.241 4.241
15 H 0.031 0.969
16 C -0.017 4.017
17 N -0.949 5.949
18 Si 0.927 3.073
19 H -0.264 1.264
20 H -0.321 1.321
21 H -0.231 1.231
22 C 0.131 3.869
23 C 0.451 3.549
24 O -0.544 6.544
25 O -0.520 6.520
26 C -0.224 4.224
27 C 0.009 3.991
28 C -0.213 4.213
29 H 0.111 0.889
30 H 0.099 0.901
31 H 0.107 0.893
32 H 0.182 0.818
33 H 0.119 0.881
34 H 0.078 0.922
35 H 0.104 0.896
36 H 0.102 0.898
37 H 0.049 0.951
38 H 0.261 0.739
39 H 0.081 0.919
40 H 0.132 0.868
41 H 0.415 0.585
42 H 0.177 0.823
43 H 0.196 0.804
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.171 1.396 -4.190 27.527
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.077 3.923
3 C -0.317 4.317
4 C 0.354 3.646
5 O -0.419 6.419
6 O -0.213 6.213
7 C 0.123 3.877
8 C -0.237 4.237
9 C 0.142 3.858
10 O -0.215 6.215
11 C -0.042 4.042
12 C 0.020 3.980
13 N -0.303 5.303
14 C -0.371 4.371
15 H 0.049 0.951
16 C -0.213 4.213
17 N -0.592 5.592
18 Si 0.754 3.246
19 H -0.191 1.191
20 H -0.250 1.250
21 H -0.153 1.153
22 C 0.002 3.998
23 C 0.292 3.708
24 O -0.434 6.434
25 O -0.333 6.333
26 C -0.242 4.242
27 C -0.008 4.008
28 C -0.214 4.214
29 H 0.129 0.871
30 H 0.118 0.882
31 H 0.125 0.875
32 H 0.199 0.801
33 H 0.137 0.863
34 H 0.096 0.904
35 H 0.122 0.878
36 H 0.120 0.880
37 H 0.067 0.933
38 H 0.070 0.930
39 H 0.099 0.901
40 H 0.149 0.851
41 H 0.276 0.724
42 H 0.194 0.806
43 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges -26.301 2.193 -4.337 26.746
hybrid contribution 1.543 -0.043 0.608 1.659
sum -24.758 2.150 -3.729 25.129
Atomic orbital electron populations
1.21240 0.84915 1.06437 1.05643 1.21944 0.99064 0.89017 0.82287
1.22290 0.90292 1.02243 1.16898 1.19945 0.89889 0.80221 0.74513
1.90910 1.73344 1.27107 1.50537 1.83463 1.45417 1.14803 1.77630
1.18809 0.91099 0.81806 0.95954 1.19555 1.00833 0.88663 1.14637
1.19203 0.91550 0.85845 0.89202 1.86389 1.36706 1.12938 1.85496
1.23997 0.95362 0.81729 1.03107 1.21270 0.93675 0.95237 0.87804
1.43858 1.22715 1.53397 1.10328 1.18376 0.93499 1.25209 1.00019
0.95142 1.26069 0.97258 0.97762 1.00194 1.70032 1.18378 1.44187
1.26617 0.86108 0.82428 0.76830 0.79185 1.19078 1.25012 1.15325
1.21377 1.01864 0.83672 0.92855 1.25871 0.74888 0.91117 0.78968
1.90631 1.38566 1.79885 1.34280 1.84582 1.74639 1.24463 1.49605
1.21495 0.90863 1.02388 1.09447 1.21219 1.02269 0.87832 0.89502
1.19224 0.90030 0.96698 1.15470 0.87067 0.88194 0.87497 0.80072
0.86304 0.90358 0.87778 0.88041 0.93253 0.92963 0.90117 0.85070
0.72388 0.80603 0.78673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.51 9.64 71.24 0.69 0.18 16
2 C 0.08 1.22 6.08 -18.28 -0.11 1.10 16
3 C -0.30 -6.41 9.62 22.39 0.22 -6.19 16
4 C 0.50 16.49 7.89 68.50 0.54 17.03 16
5 O -0.53 -20.89 17.91 18.97 0.34 -20.55 16
6 O -0.30 -10.88 9.82 14.70 0.14 -10.73 16
7 C 0.17 5.21 6.76 22.99 0.16 5.37 16
8 C -0.22 -7.51 9.94 22.44 0.22 -7.28 16
9 C 0.19 5.67 6.69 22.61 0.15 5.82 16
10 O -0.30 -10.54 9.59 -90.75 -0.87 -11.41 16
11 C 0.03 0.85 5.07 71.98 0.37 1.22 16
12 C 0.14 4.63 6.00 86.38 0.52 5.15 16
13 N -0.58 -24.42 1.57 -706.32 -1.11 -25.53 16
14 C -0.24 -13.22 9.41 84.04 0.79 -12.43 16
15 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16
16 C -0.02 -0.94 5.24 84.86 0.44 -0.50 16
17 N -0.95 -59.89 13.97 21.65 0.30 -59.59 16
18 Si 0.93 42.92 25.13 68.60 1.72 44.64 16
19 H -0.26 -11.21 6.67 99.48 0.66 -10.55 16
20 H -0.32 -16.13 7.11 99.48 0.71 -15.42 16
21 H -0.23 -9.27 7.11 99.48 0.71 -8.56 16
22 C 0.13 4.70 4.85 85.63 0.42 5.11 16
23 C 0.45 16.03 8.37 71.24 0.60 16.62 16
24 O -0.54 -23.38 17.10 21.95 0.38 -23.00 16
25 O -0.52 -13.93 13.42 -51.34 -0.69 -14.62 16
26 C -0.22 -4.12 8.96 22.13 0.20 -3.92 16
27 C 0.01 0.13 9.36 22.27 0.21 0.33 16
28 C -0.21 -4.47 5.87 -20.11 -0.12 -4.59 16
29 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16
30 H 0.10 0.18 8.10 -2.39 -0.02 0.16 16
31 H 0.11 -0.04 6.62 -2.39 -0.02 -0.05 16
32 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16
33 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16
34 H 0.08 1.66 7.64 -2.39 -0.02 1.64 16
35 H 0.10 1.65 7.64 -2.39 -0.02 1.63 16
36 H 0.10 2.56 8.07 -2.39 -0.02 2.55 16
37 H 0.05 1.79 8.04 -2.38 -0.02 1.77 16
38 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16
39 H 0.08 3.29 3.75 -2.39 -0.01 3.28 16
40 H 0.13 3.34 8.12 -2.39 -0.02 3.33 16
41 H 0.42 7.36 9.10 -74.05 -0.67 6.68 16
42 H 0.18 1.95 6.24 -2.91 -0.02 1.93 16
43 H 0.20 0.56 6.52 -2.91 -0.02 0.54 16
Total: -1.00 -90.04 369.62 5.86 -84.18
By element:
Atomic # 1 Polarization: 13.23 SS G_CDS: 0.37 Total: 13.59 kcal
Atomic # 6 Polarization: 17.74 SS G_CDS: 5.28 Total: 23.02 kcal
Atomic # 7 Polarization: -84.31 SS G_CDS: -0.81 Total: -85.12 kcal
Atomic # 8 Polarization: -79.62 SS G_CDS: -0.70 Total: -80.32 kcal
Atomic # 14 Polarization: 42.92 SS G_CDS: 1.72 Total: 44.64 kcal
Total: -90.04 5.86 -84.18 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000832859208.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.145 kcal
(2) G-P(sol) polarization free energy of solvation -90.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.322 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds