Wall clock time and date at job start Wed Apr 1 2020 04:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47353 * 240.00169 * 2 1 3 5 5 O 1.45200 * 109.47096 * 119.99924 * 2 1 3 6 6 C 1.34233 * 116.99675 * 60.00514 * 5 2 1 7 7 O 1.20821 * 120.00056 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99815 * 179.97438 * 6 5 2 9 9 C 1.50699 * 112.85105 * 311.19521 * 8 6 5 10 10 O 1.21283 * 120.00164 * 228.80191 * 9 8 6 11 11 N 1.34777 * 120.00306 * 48.80280 * 9 8 6 12 12 S 1.65600 * 120.00348 * 179.97438 * 11 9 8 13 13 O 1.42102 * 104.27708 * 181.07181 * 12 11 9 14 14 O 1.42100 * 104.27613 * 308.93216 * 12 11 9 15 15 C 1.81402 * 104.44724 * 65.00046 * 12 11 9 16 16 C 1.50699 * 109.47119 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99856 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00068 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99903 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00083 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47210 * 90.00058 * 20 18 16 22 22 H 1.48498 * 109.47421 * 210.00484 * 20 18 16 23 23 H 1.48502 * 109.47377 * 330.00532 * 20 18 16 24 24 C 1.53782 * 113.61510 * 179.97438 * 8 6 5 25 25 C 1.53781 * 87.08260 * 220.02009 * 24 8 6 26 26 C 1.53786 * 87.17350 * 25.39213 * 25 24 8 27 27 H 1.08995 * 109.47123 * 299.99507 * 1 2 3 28 28 H 1.09005 * 109.46860 * 59.99705 * 1 2 3 29 29 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47566 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47149 * 300.00263 * 3 2 1 32 32 H 1.09004 * 109.46887 * 60.00163 * 3 2 1 33 33 H 1.08997 * 109.46866 * 300.00186 * 4 2 1 34 34 H 1.09005 * 109.47035 * 60.00232 * 4 2 1 35 35 H 1.09006 * 109.47245 * 179.97438 * 4 2 1 36 36 H 0.97001 * 119.99598 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.46903 * 299.99939 * 15 12 11 38 38 H 1.09003 * 109.47197 * 60.00058 * 15 12 11 39 39 H 0.97003 * 119.99829 * 179.97438 * 19 18 16 40 40 H 1.09001 * 113.61250 * 105.46827 * 24 8 6 41 41 H 1.08997 * 113.61225 * 334.56668 * 24 8 6 42 42 H 1.09002 * 113.61445 * 139.98212 * 25 24 8 43 43 H 1.09002 * 113.61408 * 270.79943 * 25 24 8 44 44 H 1.08993 * 113.61491 * 89.15923 * 26 25 24 45 45 H 1.09000 * 113.61138 * 220.06261 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9685 1.3378 7 8 0.9560 -2.5025 0.5081 8 6 2.1182 -2.7438 2.5435 9 6 3.5985 -2.6079 2.7915 10 8 4.2739 -3.5962 2.9868 11 7 4.1718 -1.3882 2.7965 12 16 5.7982 -1.2388 3.0697 13 8 6.0335 0.1620 3.0275 14 8 6.0238 -1.9841 4.2584 15 6 6.5730 -2.0575 1.6484 16 6 8.0722 -1.9872 1.7841 17 1 8.5147 -1.4985 2.6395 18 6 8.8790 -2.5468 0.8161 19 7 8.3402 -3.1415 -0.2259 20 14 10.7373 -2.4590 0.9838 21 1 11.2242 -3.6499 1.7255 22 1 11.3554 -2.4298 -0.3661 23 1 11.1099 -1.2277 1.7256 24 6 1.6197 -4.1983 2.5703 25 6 1.4018 -4.0130 4.0813 26 6 1.2587 -2.5081 3.7989 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2073 -2.1393 35 1 3.1301 -0.7208 -1.2495 36 1 3.6315 -0.5977 2.6407 37 1 6.2601 -3.1011 1.6153 38 1 6.2671 -1.5571 0.7297 39 1 8.9078 -3.5349 -0.9071 40 1 2.3912 -4.9288 2.3268 41 1 0.6966 -4.3538 2.0120 42 1 0.4872 -4.4768 4.4507 43 1 2.2760 -4.2633 4.6825 44 1 0.2368 -2.2007 3.5770 45 1 1.7392 -1.8761 4.5458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851016618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:07 Heat of formation + Delta-G solvation = -181.798978 kcal Electronic energy + Delta-G solvation = -30918.985928 eV Core-core repulsion = 26643.740764 eV Total energy + Delta-G solvation = -4275.245164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74787 -40.15088 -37.99045 -36.68800 -36.22449 -35.21311 -34.53764 -33.92389 -33.37037 -29.08577 -28.19233 -27.60670 -27.52505 -26.00830 -23.66610 -23.24298 -22.41072 -20.14945 -19.72635 -19.12969 -18.18880 -17.34606 -16.82632 -16.68354 -16.37464 -15.99110 -15.71351 -15.33551 -15.24060 -14.64864 -14.58583 -14.38643 -14.12575 -13.87639 -13.77098 -12.80023 -12.76014 -12.57137 -12.51802 -12.33095 -12.17517 -12.14542 -12.07943 -11.92157 -11.82714 -11.63223 -11.48280 -11.33410 -11.24383 -11.20314 -11.15197 -10.92089 -10.73738 -10.67688 -10.58670 -10.52577 -10.20625 -9.95070 -9.80901 -9.20052 -8.72123 -6.34323 -4.45952 0.96929 1.78746 2.11846 2.51041 3.08667 3.21652 3.27017 3.32153 3.86221 4.10105 4.13729 4.25410 4.36892 4.50258 4.52962 4.57928 4.60106 4.72387 4.95282 5.05070 5.15489 5.25240 5.29675 5.36112 5.38834 5.46830 5.49803 5.56771 5.62497 5.66803 5.70221 5.73663 5.86075 5.91007 6.03281 6.13846 6.16131 6.29876 6.55150 6.72679 6.95591 7.39546 7.50680 7.62503 7.72157 8.54999 9.21587 10.77412 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.004218 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.544002 B = 6636.888759 C = 7532.088365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.117 3.883 3 C -0.146 4.146 4 C -0.188 4.188 5 O -0.351 6.351 6 C 0.488 3.512 7 O -0.486 6.486 8 C -0.117 4.117 9 C 0.564 3.436 10 O -0.469 6.469 11 N -1.052 6.052 12 S 2.550 3.450 13 O -0.964 6.964 14 O -0.951 6.951 15 C -0.403 4.403 16 C -0.535 4.535 17 H 0.071 0.929 18 C 0.078 3.922 19 N -0.876 5.876 20 Si 0.907 3.093 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.101 4.101 25 C -0.140 4.140 26 C -0.109 4.109 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.430 0.570 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.269 0.731 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.187 4.612 1.051 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.082 3.918 3 C -0.203 4.203 4 C -0.245 4.245 5 O -0.269 6.269 6 C 0.329 3.671 7 O -0.372 6.372 8 C -0.123 4.123 9 C 0.347 3.653 10 O -0.338 6.338 11 N -0.812 5.812 12 S 2.653 3.347 13 O -0.955 6.955 14 O -0.941 6.941 15 C -0.540 4.540 16 C -0.575 4.575 17 H 0.089 0.911 18 C -0.129 4.129 19 N -0.512 5.512 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.190 1.190 24 C -0.139 4.139 25 C -0.177 4.177 26 C -0.146 4.146 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.267 0.733 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.550 4.109 1.540 19.062 hybrid contribution 0.489 0.319 -0.928 1.096 sum -18.062 4.428 0.611 18.607 Atomic orbital electron populations 1.22488 0.93931 1.04598 1.02835 1.22296 0.94335 0.92483 0.82714 1.21920 1.03142 0.92115 1.03161 1.22533 1.02651 1.02912 0.96387 1.86450 1.69702 1.25020 1.45724 1.22742 0.77576 0.80658 0.86088 1.90574 1.35023 1.69863 1.41744 1.22396 0.94572 1.00372 0.94969 1.19191 0.88487 0.82793 0.74856 1.90929 1.63130 1.36146 1.43633 1.55524 1.32547 1.14614 1.78563 1.07255 0.72194 0.75551 0.79721 1.93524 1.82335 1.31023 1.88632 1.93530 1.82224 1.73167 1.45228 1.27601 1.07180 1.09098 1.10130 1.20274 0.86794 1.40819 1.09587 0.91095 1.24919 0.99962 0.93640 0.94342 1.69961 1.36301 1.34917 1.10030 0.86337 0.83173 0.79332 0.77917 1.19783 1.20570 1.19024 1.22914 1.02896 0.90949 0.97096 1.22921 1.03585 0.94564 0.96679 1.22962 0.99225 0.99334 0.93117 0.91919 0.90909 0.89907 0.90688 0.90152 0.91261 0.89846 0.90835 0.91196 0.73303 0.88412 0.89679 0.92118 0.88464 0.87594 0.89892 0.88572 0.88126 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.12 1.25 1.13 -90.62 -0.10 1.15 16 3 C -0.15 -1.31 8.85 37.16 0.33 -0.98 16 4 C -0.19 -2.15 8.37 37.16 0.31 -1.84 16 5 O -0.35 -4.34 7.68 -39.27 -0.30 -4.65 16 6 C 0.49 6.40 6.33 36.01 0.23 6.63 16 7 O -0.49 -6.74 11.40 -18.75 -0.21 -6.95 16 8 C -0.12 -1.52 1.22 -155.90 -0.19 -1.71 16 9 C 0.56 9.58 6.39 -10.99 -0.07 9.51 16 10 O -0.47 -9.52 13.86 -11.57 -0.16 -9.68 16 11 N -1.05 -17.97 5.37 31.22 0.17 -17.80 16 12 S 2.55 56.15 5.03 -107.50 -0.54 55.61 16 13 O -0.96 -22.18 18.08 -57.54 -1.04 -23.22 16 14 O -0.95 -23.50 17.04 -64.79 -1.10 -24.60 16 15 C -0.40 -10.14 5.64 36.01 0.20 -9.94 16 16 C -0.54 -15.03 9.13 -34.44 -0.31 -15.35 16 17 H 0.07 1.94 7.71 -52.49 -0.40 1.53 16 18 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 19 N -0.88 -25.10 13.29 55.43 0.74 -24.36 16 20 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 C -0.10 -1.17 6.78 -25.92 -0.18 -1.35 16 25 C -0.14 -1.38 7.73 -25.92 -0.20 -1.58 16 26 C -0.11 -1.05 7.23 -25.82 -0.19 -1.24 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.87 5.89 -51.93 -0.31 0.57 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.09 5.89 -51.93 -0.31 0.78 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.43 6.05 6.77 -34.47 -0.23 5.81 16 37 H 0.10 2.56 7.19 -51.92 -0.37 2.19 16 38 H 0.09 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.10 1.27 7.43 -51.93 -0.39 0.88 16 41 H 0.11 1.09 7.43 -51.93 -0.39 0.71 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 44 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 45 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -34.78 379.40 -8.31 -43.09 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.59 Total: 6.68 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 0.05 Total: -15.94 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.90 Total: -42.16 kcal Atomic # 8 Polarization: -66.28 SS G_CDS: -2.82 Total: -69.10 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 56.15 SS G_CDS: -0.54 Total: 55.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.78 -8.31 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851016618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.705 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds