Wall clock time and date at job start Wed Apr 1 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47104 * 2 1 4 4 C 1.34783 * 120.00016 * 271.82420 * 3 2 1 5 5 O 1.21671 * 119.99868 * 185.08430 * 4 3 2 6 6 C 1.46872 * 120.00017 * 5.08219 * 4 3 2 7 7 N 1.38347 * 125.45632 * 7.45174 * 6 4 3 8 8 H 0.96998 * 125.60888 * 359.91480 * 7 6 4 9 9 C 1.37511 * 108.78728 * 179.97438 * 7 6 4 10 10 C 1.39226 * 133.13637 * 179.97438 * 9 7 6 11 11 C 1.37673 * 119.81549 * 179.91413 * 10 9 7 12 12 C 1.38932 * 120.63792 * 0.10508 * 11 10 9 13 13 C 1.36441 * 120.61349 * 359.94726 * 12 11 10 14 14 C 1.40079 * 119.83527 * 359.97438 * 13 12 11 15 15 C 1.36023 * 125.46081 * 187.13557 * 6 4 3 16 16 Cl 1.73597 * 126.15009 * 0.02562 * 15 6 4 17 17 C 1.46495 * 120.00097 * 92.10385 * 3 2 1 18 18 C 1.53942 * 113.74449 * 222.46557 * 17 3 2 19 19 N 1.47812 * 86.04174 * 222.08188 * 18 17 3 20 20 C 1.36925 * 134.46149 * 204.64436 * 19 18 17 21 21 H 1.07999 * 120.00527 * 179.86882 * 20 19 18 22 22 C 1.38821 * 120.00033 * 359.86587 * 20 19 18 23 23 N 1.31618 * 119.99430 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00299 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47211 * 89.99644 * 24 22 20 26 26 H 1.48501 * 109.46927 * 209.99833 * 24 22 20 27 27 H 1.48501 * 109.46818 * 329.99865 * 24 22 20 28 28 C 1.47584 * 91.04578 * 24.54538 * 19 18 17 29 29 H 1.09007 * 109.47618 * 60.00016 * 1 2 3 30 30 H 1.08999 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47216 * 299.99897 * 1 2 3 32 32 H 1.09005 * 109.46866 * 239.99712 * 2 1 3 33 33 H 1.08995 * 109.47206 * 120.00514 * 2 1 3 34 34 H 1.08009 * 120.09138 * 0.02562 * 10 9 7 35 35 H 1.08004 * 119.68040 * 180.02562 * 11 10 9 36 36 H 1.08003 * 119.68973 * 179.97438 * 12 11 10 37 37 H 1.08004 * 120.08495 * 179.97438 * 13 12 11 38 38 H 1.09005 * 112.94543 * 354.05927 * 17 3 2 39 39 H 1.09004 * 113.76752 * 336.34904 * 18 17 3 40 40 H 1.09001 * 113.77281 * 107.73809 * 18 17 3 41 41 H 0.97006 * 119.99615 * 180.02562 * 23 22 20 42 42 H 1.08994 * 113.76977 * 221.14581 * 28 19 18 43 43 H 1.09012 * 113.76449 * 89.75774 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2079 2.0289 -1.1667 5 8 2.7002 3.1416 -1.1717 6 6 1.8203 1.3917 -2.4319 7 7 1.1235 0.2025 -2.5510 8 1 0.8127 -0.3463 -1.8140 9 6 0.9451 -0.0744 -3.8861 10 6 0.3263 -1.1192 -4.5672 11 6 0.3056 -1.1218 -5.9438 12 6 0.8988 -0.0915 -6.6627 13 6 1.5121 0.9425 -6.0175 14 6 1.5452 0.9688 -4.6173 15 6 2.0836 1.8792 -3.6742 16 17 2.9298 3.3505 -4.0387 17 6 2.3064 2.0563 1.2678 18 6 1.8140 3.5139 1.3198 19 7 3.1036 3.8184 1.9747 20 6 3.5407 4.8018 2.8213 21 1 4.5629 4.7993 3.1700 22 6 2.6701 5.8022 3.2314 23 7 1.4245 5.8056 2.8060 24 14 3.2665 7.1443 4.3857 25 1 3.8014 8.2789 3.5912 26 1 2.1344 7.6163 5.2228 27 1 4.3378 6.6042 5.2609 28 6 3.7299 2.6360 1.3519 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 -0.1378 -1.9246 -4.0171 35 1 -0.1754 -1.9331 -6.4699 36 1 0.8739 -0.1091 -7.7423 37 1 1.9710 1.7388 -6.5849 38 1 2.0211 1.4654 2.1383 39 1 1.7001 3.9744 0.3384 40 1 0.9471 3.6622 1.9637 41 1 0.8162 6.5049 3.0922 42 1 4.3901 2.0847 2.0214 43 1 4.1802 2.8381 0.3799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950730999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:19 Heat of formation + Delta-G solvation = 99.363925 kcal Electronic energy + Delta-G solvation = -28388.484400 eV Core-core repulsion = 24462.989338 eV Total energy + Delta-G solvation = -3925.495061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.97835 -41.25624 -38.76985 -37.93212 -37.56829 -36.70209 -34.21288 -33.09861 -31.68817 -30.69647 -29.97154 -29.13707 -26.60323 -26.16332 -24.72053 -23.90930 -23.17444 -22.28279 -21.68250 -20.39246 -18.78297 -18.73745 -18.21829 -17.54537 -16.99943 -16.78037 -16.39891 -16.05125 -15.97155 -15.62101 -15.54254 -14.95035 -14.87744 -14.45392 -14.42678 -14.27487 -14.14176 -13.78925 -13.40701 -13.16081 -13.05297 -12.95603 -12.79274 -12.78137 -12.74803 -12.53455 -12.15209 -12.05034 -11.98344 -11.83993 -11.79515 -11.50250 -11.07639 -10.66278 -10.62460 -9.70317 -9.31958 -8.89548 -8.77865 -7.91201 -5.24403 -0.38256 0.60363 0.94294 1.06099 1.41825 1.45748 1.53983 1.67853 2.04707 2.14817 2.47873 2.88873 3.23813 3.31134 3.48466 3.62240 3.72939 3.76131 4.01274 4.10450 4.17324 4.19433 4.25814 4.34941 4.46422 4.52026 4.53783 4.66096 4.71306 4.74679 4.85256 4.99687 5.08923 5.14628 5.22571 5.23176 5.30290 5.40203 5.48135 5.54295 5.66118 5.79971 5.90615 6.04816 6.25335 6.34713 6.90071 7.04186 7.59015 8.56003 9.25992 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.003020 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.884600 B = 9268.518797 C =10235.029125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.074 3.926 3 N -0.594 5.594 4 C 0.564 3.436 5 O -0.526 6.526 6 C 0.026 3.974 7 N -0.562 5.562 8 H 0.443 0.557 9 C 0.108 3.892 10 C -0.130 4.130 11 C -0.076 4.076 12 C -0.139 4.139 13 C -0.077 4.077 14 C -0.136 4.136 15 C -0.060 4.060 16 Cl -0.038 7.038 17 C 0.130 3.870 18 C 0.155 3.845 19 N -0.631 5.631 20 C -0.234 4.234 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.982 3.018 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.263 1.263 28 C 0.111 3.889 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.022 0.978 40 H 0.039 0.961 41 H 0.247 0.753 42 H 0.061 0.939 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -23.797 -16.958 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.048 4.048 3 N -0.327 5.327 4 C 0.351 3.649 5 O -0.402 6.402 6 C -0.086 4.086 7 N -0.180 5.180 8 H 0.297 0.703 9 C -0.002 4.002 10 C -0.151 4.151 11 C -0.096 4.096 12 C -0.158 4.158 13 C -0.096 4.096 14 C -0.140 4.140 15 C -0.096 4.096 16 Cl -0.009 7.009 17 C 0.026 3.974 18 C 0.029 3.971 19 N -0.357 5.357 20 C -0.362 4.362 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.810 3.190 25 H -0.219 1.219 26 H -0.216 1.216 27 H -0.188 1.188 28 C -0.015 4.015 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.170 0.830 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.004 -22.895 -16.551 28.691 hybrid contribution 0.356 1.717 0.863 1.954 sum -4.648 -21.178 -15.689 26.763 Atomic orbital electron populations 1.22553 0.94464 1.05114 1.03034 1.22383 0.95533 0.81057 1.05799 1.47986 1.65043 1.14941 1.04700 1.17505 0.79365 0.85162 0.82844 1.90969 1.43246 1.19754 1.86209 1.19696 1.04741 0.90834 0.93366 1.43397 1.47870 1.19280 1.07491 0.70304 1.18703 1.00943 0.97458 0.83108 1.20511 1.02441 0.97268 0.94848 1.21421 0.96900 0.98646 0.92600 1.21043 0.99165 0.94055 1.01549 1.20601 0.98703 0.99538 0.90780 1.18147 1.05504 0.95627 0.94735 1.20320 1.04584 0.91997 0.92738 1.98357 1.75553 1.32570 1.94438 1.23508 0.95854 0.92823 0.85232 1.22498 0.89922 0.90286 0.94405 1.46081 1.09937 1.28704 1.51020 1.19418 0.96076 1.02709 1.18000 0.89898 1.25689 0.96245 1.01308 1.02974 1.70044 1.05244 1.35505 1.49398 0.85026 0.77170 0.78705 0.78110 1.21942 1.21601 1.18762 1.23015 0.95379 0.87293 0.95806 0.93281 0.86567 0.91487 0.88918 0.86024 0.82360 0.81604 0.82963 0.85609 0.84474 0.96034 0.94307 0.94368 0.92116 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 8.92 71.98 0.64 -2.16 16 2 C 0.07 1.29 5.61 86.38 0.48 1.77 16 3 N -0.59 -18.13 2.73 -807.98 -2.21 -20.34 16 4 C 0.56 20.67 7.06 86.50 0.61 21.28 16 5 O -0.53 -24.77 11.13 -4.26 -0.05 -24.81 16 6 C 0.03 0.78 6.52 39.86 0.26 1.04 16 7 N -0.56 -11.72 4.26 -177.09 -0.75 -12.47 16 8 H 0.44 6.51 3.32 -92.71 -0.31 6.20 16 9 C 0.11 2.17 7.25 39.12 0.28 2.45 16 10 C -0.13 -1.63 10.08 22.37 0.23 -1.40 16 11 C -0.08 -0.78 10.01 22.30 0.22 -0.56 16 12 C -0.14 -1.84 9.96 22.02 0.22 -1.62 16 13 C -0.08 -1.55 10.06 22.30 0.22 -1.32 16 14 C -0.14 -3.41 6.16 -21.34 -0.13 -3.54 16 15 C -0.06 -1.89 6.72 22.61 0.15 -1.74 16 16 Cl -0.04 -1.32 27.71 -2.72 -0.08 -1.40 16 17 C 0.13 4.92 4.58 46.74 0.21 5.13 16 18 C 0.16 8.11 6.78 86.44 0.59 8.70 16 19 N -0.63 -35.30 3.70 -716.60 -2.65 -37.96 16 20 C -0.23 -14.07 10.70 84.04 0.90 -13.17 16 21 H 0.08 4.76 7.83 -2.91 -0.02 4.74 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 23 N -0.95 -61.08 11.39 21.65 0.25 -60.83 16 24 Si 0.98 48.30 29.55 68.60 2.03 50.32 16 25 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 28 C 0.11 4.97 8.27 86.48 0.72 5.69 16 29 H 0.05 0.87 6.50 -2.38 -0.02 0.85 16 30 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.34 5.14 -2.38 -0.01 1.33 16 33 H 0.12 1.52 8.01 -2.39 -0.02 1.50 16 34 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.14 4.40 8.02 -2.38 -0.02 4.38 16 39 H 0.02 1.29 5.69 -2.38 -0.01 1.27 16 40 H 0.04 2.21 7.17 -2.39 -0.02 2.20 16 41 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.03 1.66 6.32 -2.38 -0.02 1.65 16 Total: -1.00 -84.60 358.95 3.36 -81.23 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.76 Total: 9.43 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.08 Total: 16.82 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -5.37 Total: -131.60 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -84.60 3.36 -81.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950730999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.594 kcal (2) G-P(sol) polarization free energy of solvation -84.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds