Wall clock time and date at job start Wed Apr 1 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46861 * 2 1 4 4 N 1.46497 * 109.47033 * 239.99954 * 2 1 3 5 5 C 1.34776 * 119.99846 * 85.00353 * 4 2 1 6 6 O 1.21670 * 120.00135 * 359.97438 * 5 4 2 7 7 C 1.46879 * 120.00104 * 179.97438 * 5 4 2 8 8 N 1.38348 * 125.45715 * 359.97438 * 7 5 4 9 9 H 0.97007 * 125.60179 * 0.06182 * 8 7 5 10 10 C 1.37500 * 108.78977 * 180.02562 * 8 7 5 11 11 C 1.39233 * 133.13745 * 179.97438 * 10 8 7 12 12 C 1.37676 * 119.81411 * 180.02562 * 11 10 8 13 13 C 1.38930 * 120.64259 * 359.97438 * 12 11 10 14 14 C 1.36450 * 120.60795 * 359.97438 * 13 12 11 15 15 C 1.40080 * 119.83597 * 0.29523 * 14 13 12 16 16 C 1.36025 * 125.46325 * 180.02562 * 7 5 4 17 17 Cl 1.73600 * 126.14747 * 359.96989 * 16 7 5 18 18 C 1.52999 * 109.47179 * 119.99690 * 2 1 3 19 19 C 1.53943 * 113.74339 * 282.20309 * 18 2 1 20 20 N 1.47816 * 86.03528 * 222.07935 * 19 18 2 21 21 C 1.36936 * 134.45923 * 204.63665 * 20 19 18 22 22 H 1.07998 * 119.99793 * 182.58560 * 21 20 19 23 23 C 1.38810 * 119.99876 * 2.59190 * 21 20 19 24 24 N 1.31623 * 120.00087 * 353.41463 * 23 21 20 25 25 Si 1.86797 * 120.00012 * 173.41108 * 23 21 20 26 26 H 1.48501 * 109.47296 * 94.97270 * 25 23 21 27 27 H 1.48508 * 109.47199 * 214.97314 * 25 23 21 28 28 H 1.48497 * 109.47420 * 334.97164 * 25 23 21 29 29 C 1.47584 * 91.05048 * 24.54832 * 20 19 18 30 30 H 1.09000 * 109.46785 * 184.48685 * 1 2 3 31 31 H 1.08993 * 109.47080 * 304.48841 * 1 2 3 32 32 H 1.08999 * 109.46833 * 64.48625 * 1 2 3 33 33 H 0.96998 * 120.00336 * 264.99741 * 4 2 1 34 34 H 1.07999 * 120.08938 * 359.97438 * 11 10 8 35 35 H 1.08001 * 119.67700 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.69446 * 180.02562 * 13 12 11 37 37 H 1.08000 * 120.07789 * 180.02562 * 14 13 12 38 38 H 1.08999 * 112.93924 * 53.79423 * 18 2 1 39 39 H 1.08997 * 113.77195 * 336.34222 * 19 18 2 40 40 H 1.08996 * 113.77406 * 107.74615 * 19 18 2 41 41 H 0.96998 * 119.99969 * 180.02562 * 24 23 21 42 42 H 1.08992 * 113.77030 * 221.15274 * 29 20 19 43 43 H 1.09004 * 113.87084 * 89.76167 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8574 1.1622 -2.4118 7 6 2.6372 -0.7104 -3.5562 8 7 2.9983 -2.0444 -3.6217 9 1 2.9683 -2.6743 -2.8846 10 6 3.4057 -2.3305 -4.9033 11 6 3.8659 -3.4914 -5.5192 12 6 4.2077 -3.4695 -6.8526 13 6 4.0978 -2.2988 -7.5927 14 6 3.6484 -1.1491 -7.0114 15 6 3.2996 -1.1442 -5.6547 16 6 2.8098 -0.1425 -4.7802 17 17 2.4914 1.5128 -5.1950 18 6 2.0401 -0.7212 1.2493 19 6 1.9658 0.1298 2.5299 20 7 3.3032 -0.4145 2.8463 21 6 4.0103 -0.6097 4.0026 22 1 5.0166 -0.9995 3.9609 23 6 3.4335 -0.3068 5.2283 24 7 2.2601 0.2877 5.2746 25 14 4.3226 -0.7429 6.8122 26 1 5.0967 0.4328 7.2852 27 1 3.3300 -1.1307 7.8465 28 1 5.2480 -1.8775 6.5642 29 6 3.5694 -0.6651 1.4164 30 1 -0.3633 -1.0245 0.0804 31 1 -0.3633 0.5819 0.8470 32 1 -0.3633 0.4426 -0.9275 33 1 2.2491 -1.6317 -1.1526 34 1 3.9551 -4.4062 -4.9521 35 1 4.5641 -4.3713 -7.3282 36 1 4.3699 -2.2991 -8.6378 37 1 3.5659 -0.2440 -7.5948 38 1 1.6226 -1.7217 1.3624 39 1 1.9614 1.2038 2.3442 40 1 1.1864 -0.1864 3.2231 41 1 1.8573 0.4997 6.1311 42 1 4.0676 -1.6148 1.2222 43 1 4.0371 0.1739 0.9012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970046579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:29 Heat of formation + Delta-G solvation = 50.932219 kcal Electronic energy + Delta-G solvation = -27110.546481 eV Core-core repulsion = 23182.951263 eV Total energy + Delta-G solvation = -3927.595218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.70325 -40.91765 -39.61876 -37.82665 -37.45731 -36.28801 -34.19209 -33.03884 -32.23089 -30.40313 -29.93494 -29.32680 -26.69009 -25.91023 -25.05202 -23.25838 -22.87944 -22.07385 -21.46037 -20.77020 -19.42552 -18.78986 -18.21261 -17.47304 -16.99156 -16.79287 -16.53238 -16.06186 -15.82552 -15.60188 -15.38351 -15.15488 -14.88851 -14.80739 -14.68839 -14.43572 -14.06882 -13.45989 -13.25403 -13.10898 -13.06979 -13.01094 -12.82005 -12.69870 -12.59976 -12.39819 -12.15858 -12.05907 -11.86505 -11.80218 -11.60545 -11.28392 -11.04421 -10.83581 -10.66576 -10.20621 -9.34991 -8.94906 -8.79680 -7.93032 -5.25382 -0.39718 0.59255 0.93137 1.04666 1.44802 1.46110 1.55558 1.79992 2.04755 2.12423 2.45981 2.87962 3.28207 3.35334 3.48126 3.62792 3.74109 3.92718 4.03290 4.19316 4.22935 4.24357 4.41487 4.49137 4.51026 4.55635 4.66224 4.73709 4.78911 4.84352 4.92900 5.04433 5.08448 5.23279 5.24397 5.29316 5.35726 5.42300 5.53083 5.53429 5.62486 5.65595 5.92050 6.03661 6.26749 6.44793 6.90321 7.02675 7.59172 8.54569 9.24460 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002297 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.510573 B =12187.234454 C =13101.790082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.164 3.836 3 H 0.066 0.934 4 N -0.700 5.700 5 C 0.578 3.422 6 O -0.543 6.543 7 C 0.025 3.975 8 N -0.554 5.554 9 H 0.438 0.562 10 C 0.116 3.884 11 C -0.133 4.133 12 C -0.078 4.078 13 C -0.141 4.141 14 C -0.075 4.075 15 C -0.135 4.135 16 C -0.056 4.056 17 Cl -0.031 7.031 18 C -0.108 4.108 19 C 0.171 3.829 20 N -0.643 5.643 21 C -0.237 4.237 22 H 0.083 0.917 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.126 3.874 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.410 0.590 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.109 0.891 39 H 0.011 0.989 40 H 0.047 0.953 41 H 0.249 0.751 42 H 0.063 0.937 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 -11.090 -27.643 29.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.059 3.941 3 H 0.084 0.916 4 N -0.351 5.351 5 C 0.364 3.636 6 O -0.419 6.419 7 C -0.087 4.087 8 N -0.161 5.161 9 H 0.281 0.719 10 C 0.006 3.994 11 C -0.153 4.153 12 C -0.098 4.098 13 C -0.159 4.159 14 C -0.094 4.094 15 C -0.140 4.140 16 C -0.093 4.093 17 Cl -0.003 7.003 18 C -0.127 4.127 19 C 0.045 3.955 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.100 0.900 23 C -0.260 4.260 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.190 1.190 29 C 0.001 3.999 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.246 0.754 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.127 0.873 39 H 0.029 0.971 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.441 -10.166 -27.178 29.021 hybrid contribution 0.373 0.172 1.682 1.731 sum 0.815 -9.994 -25.496 27.397 Atomic orbital electron populations 1.22050 0.93766 1.03186 1.02019 1.20833 0.94873 0.96073 0.82308 0.91586 1.45750 1.66460 1.14280 1.08598 1.17220 0.78044 0.86124 0.82234 1.90895 1.50793 1.15760 1.84493 1.19659 1.09218 0.85271 0.94574 1.41742 1.55812 1.07897 1.10679 0.71928 1.18510 1.01087 0.95923 0.83907 1.20494 1.03281 0.95570 0.95995 1.21402 0.96531 0.99249 0.92578 1.21045 1.01150 0.92101 1.01638 1.20608 0.97349 0.99919 0.91501 1.18126 1.08193 0.91903 0.95770 1.20262 1.07997 0.87527 0.93506 1.98354 1.93959 1.14842 1.93100 1.23453 0.95930 1.00508 0.92837 1.22138 0.88230 0.93771 0.91388 1.46482 1.17012 1.72327 1.01155 1.19424 0.97289 1.35894 0.83922 0.89965 1.25636 0.98315 1.01357 1.00693 1.70006 1.18758 1.46895 1.24509 0.85072 0.77278 0.77925 0.79097 1.21768 1.21817 1.19027 1.22685 0.94862 0.98459 0.83866 0.90634 0.91657 0.92773 0.75399 0.82850 0.82036 0.83046 0.85218 0.87258 0.97100 0.93504 0.94187 0.91849 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.43 71.98 0.68 -3.26 16 2 C 0.16 4.70 2.28 44.99 0.10 4.80 16 3 H 0.07 2.30 7.49 -2.38 -0.02 2.28 16 4 N -0.70 -16.10 4.95 -446.31 -2.21 -18.31 16 5 C 0.58 15.81 7.76 86.50 0.67 16.48 16 6 O -0.54 -18.99 15.05 -4.25 -0.06 -19.06 16 7 C 0.02 0.59 6.97 39.86 0.28 0.86 16 8 N -0.55 -8.89 6.08 -177.09 -1.08 -9.96 16 9 H 0.44 4.06 8.12 -92.70 -0.75 3.31 16 10 C 0.12 1.95 7.25 39.13 0.28 2.24 16 11 C -0.13 -1.47 10.08 22.38 0.23 -1.25 16 12 C -0.08 -0.70 10.01 22.30 0.22 -0.48 16 13 C -0.14 -1.56 9.97 22.02 0.22 -1.34 16 14 C -0.08 -1.24 10.06 22.30 0.22 -1.01 16 15 C -0.14 -2.82 6.16 -21.34 -0.13 -2.96 16 16 C -0.06 -1.42 6.72 22.61 0.15 -1.27 16 17 Cl -0.03 -0.85 27.67 -2.72 -0.08 -0.92 16 18 C -0.11 -3.56 3.35 -10.14 -0.03 -3.59 16 19 C 0.17 7.91 7.03 86.44 0.61 8.51 16 20 N -0.64 -32.61 3.70 -716.15 -2.65 -35.26 16 21 C -0.24 -13.27 10.69 84.03 0.90 -12.38 16 22 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 23 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 24 N -0.95 -57.52 11.43 21.65 0.25 -57.27 16 25 Si 0.98 45.58 29.56 68.60 2.03 47.61 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 29 C 0.13 4.80 8.38 86.48 0.73 5.52 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.41 6.62 7.66 -92.71 -0.71 5.91 16 34 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 35 H 0.16 0.43 8.06 -2.91 -0.02 0.40 16 36 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 37 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.01 0.55 8.04 -2.39 -0.02 0.53 16 40 H 0.05 2.41 7.20 -2.39 -0.02 2.39 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -75.65 377.09 1.39 -74.26 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -0.40 Total: 11.38 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 5.59 Total: 7.54 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -5.69 Total: -120.81 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.06 Total: -19.06 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.92 kcal Total: -75.65 1.39 -74.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970046579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.196 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds