Wall clock time and date at job start Wed Apr 1 2020 05:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47605 * 2 1 4 4 N 1.46505 * 109.47315 * 239.99594 * 2 1 3 5 5 C 1.34777 * 119.99745 * 85.00141 * 4 2 1 6 6 O 1.21652 * 119.99747 * 359.97438 * 5 4 2 7 7 C 1.47053 * 119.99959 * 180.02562 * 5 4 2 8 8 C 1.35871 * 125.42882 * 180.02562 * 7 5 4 9 9 C 1.41587 * 107.73139 * 179.97438 * 8 7 5 10 10 C 1.40111 * 133.36279 * 180.29574 * 9 8 7 11 11 C 1.36528 * 119.82328 * 180.17422 * 10 9 8 12 12 Cl 1.73601 * 119.71116 * 179.77210 * 11 10 9 13 13 C 1.39044 * 120.58669 * 359.49620 * 11 10 9 14 14 C 1.37671 * 120.63721 * 0.25651 * 13 11 10 15 15 C 1.39226 * 119.82289 * 359.97438 * 14 13 11 16 16 N 1.37526 * 133.16728 * 180.02562 * 15 14 13 17 17 H 0.97000 * 125.60267 * 359.95801 * 16 15 14 18 18 C 1.53004 * 109.46944 * 120.00106 * 2 1 3 19 19 C 1.53943 * 113.74005 * 282.19431 * 18 2 1 20 20 N 1.47806 * 86.03761 * 222.08503 * 19 18 2 21 21 C 1.36940 * 134.45731 * 204.64284 * 20 19 18 22 22 H 1.08002 * 120.00445 * 182.58078 * 21 20 19 23 23 C 1.38816 * 119.99814 * 2.58757 * 21 20 19 24 24 N 1.31618 * 120.00108 * 353.41270 * 23 21 20 25 25 Si 1.86799 * 119.99937 * 173.41124 * 23 21 20 26 26 H 1.48501 * 109.47116 * 94.97124 * 25 23 21 27 27 H 1.48500 * 109.47470 * 214.97048 * 25 23 21 28 28 H 1.48503 * 109.47211 * 334.97512 * 25 23 21 29 29 C 1.47576 * 91.05397 * 24.55092 * 20 19 18 30 30 H 1.09001 * 109.46883 * 304.49228 * 1 2 3 31 31 H 1.09007 * 109.46746 * 64.48774 * 1 2 3 32 32 H 1.08999 * 109.47374 * 184.48918 * 1 2 3 33 33 H 0.96999 * 120.00416 * 265.00808 * 4 2 1 34 34 H 1.08003 * 126.13681 * 359.97438 * 8 7 5 35 35 H 1.08004 * 120.08906 * 359.92320 * 10 9 8 36 36 H 1.07994 * 119.68219 * 180.27296 * 13 11 10 37 37 H 1.07997 * 120.08794 * 179.97438 * 14 13 11 38 38 H 1.08999 * 112.94380 * 53.78770 * 18 2 1 39 39 H 1.08998 * 113.77308 * 336.35406 * 19 18 2 40 40 H 1.09007 * 113.76933 * 107.74290 * 19 18 2 41 41 H 0.97000 * 120.00112 * 179.97438 * 24 23 21 42 42 H 1.08997 * 113.77570 * 221.15750 * 29 20 19 43 43 H 1.08999 * 113.87173 * 89.76238 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8574 1.1619 -2.4119 7 6 2.6369 -0.7118 -3.5579 8 6 2.8089 -0.1439 -4.7802 9 6 3.2937 -1.1449 -5.6564 10 6 3.6519 -1.1466 -7.0109 11 6 4.0940 -2.2987 -7.5949 12 17 4.5315 -2.2989 -9.2749 13 6 4.2025 -3.4707 -6.8547 14 6 3.8612 -3.4923 -5.5211 15 6 3.4033 -2.3310 -4.9047 16 7 2.9968 -2.0438 -3.6226 17 1 2.9664 -2.6736 -2.8855 18 6 2.0400 -0.7213 1.2493 19 6 1.9659 0.1297 2.5299 20 7 3.3032 -0.4146 2.8462 21 6 4.0103 -0.6098 4.0026 22 1 5.0166 -0.9997 3.9610 23 6 3.4335 -0.3069 5.2284 24 7 2.2602 0.2877 5.2746 25 14 4.3225 -0.7430 6.8123 26 1 5.0967 0.4327 7.2852 27 1 3.3300 -1.1306 7.8465 28 1 5.2479 -1.8777 6.5642 29 6 3.5694 -0.6652 1.4165 30 1 -0.3633 0.5820 0.8470 31 1 -0.3633 0.4427 -0.9275 32 1 -0.3634 -1.0245 0.0804 33 1 2.2490 -1.6319 -1.1526 34 1 2.6113 0.8863 -5.0374 35 1 3.5747 -0.2398 -7.5925 36 1 4.5580 -4.3727 -7.3303 37 1 3.9485 -4.4077 -4.9546 38 1 1.6225 -1.7218 1.3624 39 1 1.9614 1.2038 2.3441 40 1 1.1863 -0.1864 3.2231 41 1 1.8569 0.4991 6.1311 42 1 4.0676 -1.6150 1.2221 43 1 4.0371 0.1737 0.9012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970249766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:36 Heat of formation + Delta-G solvation = 66.743073 kcal Electronic energy + Delta-G solvation = -26659.002916 eV Core-core repulsion = 22732.093309 eV Total energy + Delta-G solvation = -3926.909608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97646 -39.78874 -38.20188 -37.61707 -36.19587 -35.02248 -32.65963 -32.25679 -30.96848 -29.58148 -29.24226 -27.55085 -25.21003 -24.53326 -23.76860 -22.60460 -21.88577 -21.01524 -20.37794 -19.46385 -18.49311 -17.48064 -16.95398 -16.62603 -16.05126 -15.54170 -15.36087 -14.85298 -14.69541 -14.51551 -14.29094 -14.09061 -13.83234 -13.68466 -13.34314 -13.28878 -13.07342 -12.75515 -12.39041 -12.16804 -11.73546 -11.69063 -11.46185 -11.33362 -11.19170 -11.16259 -10.97196 -10.74108 -10.45442 -10.35626 -10.34116 -9.90546 -9.84741 -9.52778 -9.09404 -8.79545 -8.57117 -8.20818 -6.94540 -5.82664 -3.13894 0.34053 1.00033 1.77149 1.83886 2.50252 2.98169 3.14885 3.35367 3.35446 3.40590 3.42721 4.18719 4.39940 4.43590 4.57629 4.75123 4.90122 4.95131 5.03407 5.06123 5.10077 5.30921 5.45709 5.46892 5.53144 5.55781 5.71943 5.75580 5.86510 5.88612 5.95036 6.03058 6.16244 6.22762 6.26033 6.34014 6.42683 6.49374 6.54270 6.67801 6.93111 7.15171 7.29168 7.38507 7.49354 7.92559 8.02116 8.99281 9.65817 10.54087 11.34954 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.001854 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.454318 B =15099.036422 C =15900.924254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.092 0.908 4 N -0.714 5.714 5 C 0.580 3.420 6 O -0.520 6.520 7 C 0.031 3.969 8 C -0.108 4.108 9 C -0.108 4.108 10 C -0.050 4.050 11 C -0.062 4.062 12 Cl -0.075 7.075 13 C -0.084 4.084 14 C -0.114 4.114 15 C 0.113 3.887 16 N -0.573 5.573 17 H 0.421 0.579 18 C -0.148 4.148 19 C 0.176 3.824 20 N -0.611 5.611 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.393 0.607 34 H 0.160 0.840 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.254 0.746 42 H 0.039 0.961 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -8.047 -25.779 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.110 0.890 4 N -0.363 5.363 5 C 0.365 3.635 6 O -0.395 6.395 7 C -0.079 4.079 8 C -0.135 4.135 9 C -0.113 4.113 10 C -0.069 4.069 11 C -0.090 4.090 12 Cl -0.047 7.047 13 C -0.104 4.104 14 C -0.135 4.135 15 C 0.003 3.997 16 N -0.178 5.178 17 H 0.260 0.740 18 C -0.168 4.168 19 C 0.050 3.950 20 N -0.337 5.337 21 C -0.353 4.353 22 H 0.097 0.903 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.215 1.215 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.177 0.823 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.574 -7.215 -25.391 26.402 hybrid contribution 0.706 -0.930 1.163 1.648 sum 0.131 -8.145 -24.228 25.561 Atomic orbital electron populations 1.22120 0.95078 1.02044 1.02417 1.21218 0.94020 0.97591 0.82524 0.89010 1.46076 1.66652 1.13693 1.09915 1.17171 0.78210 0.86403 0.81740 1.90867 1.49999 1.14486 1.84176 1.20374 1.07365 0.83637 0.96543 1.20899 1.02715 0.99736 0.90143 1.18014 1.06198 0.93535 0.93571 1.20242 0.96573 0.97357 0.92745 1.20235 1.07097 0.95622 0.86012 1.98366 1.91830 1.98862 1.15620 1.20720 0.99744 0.97144 0.92842 1.20014 1.03119 0.95980 0.94393 1.18360 1.00915 0.95859 0.84610 1.41999 1.56368 1.09633 1.09775 0.74031 1.23878 0.97662 1.00772 0.94502 1.22233 0.89683 0.93982 0.89057 1.46031 1.16052 1.72074 0.99585 1.19022 0.96932 1.36831 0.82516 0.90312 1.24786 0.97303 1.00776 0.97478 1.69816 1.17188 1.45402 1.24299 0.86116 0.78403 0.78052 0.83272 1.21640 1.21542 1.20590 1.22533 0.92952 0.97655 0.86990 0.90839 0.92659 0.92688 0.77340 0.82277 0.84577 0.84475 0.84880 0.89296 0.95266 0.90753 0.93578 0.94248 0.95000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.43 37.16 0.35 -1.71 16 2 C 0.15 2.14 2.29 -67.92 -0.16 1.98 16 3 H 0.09 1.53 7.49 -51.93 -0.39 1.14 16 4 N -0.71 -8.30 4.95 -54.99 -0.27 -8.58 16 5 C 0.58 7.51 7.76 -12.69 -0.10 7.41 16 6 O -0.52 -8.58 16.50 5.23 0.09 -8.49 16 7 C 0.03 0.33 6.97 -82.30 -0.57 -0.24 16 8 C -0.11 -1.16 10.53 -39.15 -0.41 -1.57 16 9 C -0.11 -1.07 6.16 -106.93 -0.66 -1.72 16 10 C -0.05 -0.44 9.81 -39.50 -0.39 -0.82 16 11 C -0.06 -0.51 6.28 -39.90 -0.25 -0.76 16 12 Cl -0.08 -0.59 28.93 -51.86 -1.50 -2.09 16 13 C -0.08 -0.61 9.79 -39.49 -0.39 -0.99 16 14 C -0.11 -0.81 10.07 -39.42 -0.40 -1.21 16 15 C 0.11 1.01 7.25 -83.96 -0.61 0.40 16 16 N -0.57 -4.73 6.08 -7.35 -0.04 -4.77 16 17 H 0.42 2.33 8.12 -40.82 -0.33 2.00 16 18 C -0.15 -2.48 3.35 -89.69 -0.30 -2.78 16 19 C 0.18 3.94 7.02 -2.84 -0.02 3.92 16 20 N -0.61 -15.27 3.70 -177.72 -0.66 -15.92 16 21 C -0.23 -6.25 10.69 -15.06 -0.16 -6.41 16 22 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -26.88 11.43 55.49 0.63 -26.25 16 25 Si 0.91 21.87 29.56 -169.99 -5.02 16.85 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 C 0.12 2.41 8.38 -2.97 -0.02 2.38 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.39 3.50 7.66 -40.82 -0.31 3.19 16 34 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 40 H 0.07 1.83 7.20 -51.93 -0.37 1.46 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -32.97 379.45 -10.84 -43.81 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.60 Total: 2.15 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -4.18 Total: -2.41 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.34 Total: -55.52 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.97 -10.84 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970249766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.551 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds