Wall clock time and date at job start Wed Apr 1 2020 05:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47605 * 2 1 4 4 N 1.46505 * 109.47315 * 239.99594 * 2 1 3 5 5 C 1.34777 * 119.99745 * 85.00141 * 4 2 1 6 6 O 1.21652 * 119.99747 * 359.97438 * 5 4 2 7 7 C 1.47053 * 119.99959 * 180.02562 * 5 4 2 8 8 C 1.35871 * 125.42882 * 180.02562 * 7 5 4 9 9 C 1.41587 * 107.73139 * 179.97438 * 8 7 5 10 10 C 1.40111 * 133.36279 * 180.29574 * 9 8 7 11 11 C 1.36528 * 119.82328 * 180.17422 * 10 9 8 12 12 Cl 1.73601 * 119.71116 * 179.77210 * 11 10 9 13 13 C 1.39044 * 120.58669 * 359.49620 * 11 10 9 14 14 C 1.37671 * 120.63721 * 0.25651 * 13 11 10 15 15 C 1.39226 * 119.82289 * 359.97438 * 14 13 11 16 16 N 1.37526 * 133.16728 * 180.02562 * 15 14 13 17 17 H 0.97000 * 125.60267 * 359.95801 * 16 15 14 18 18 C 1.53004 * 109.46944 * 120.00106 * 2 1 3 19 19 C 1.53943 * 113.74005 * 282.19431 * 18 2 1 20 20 N 1.47806 * 86.03761 * 222.08503 * 19 18 2 21 21 C 1.36940 * 134.45731 * 204.64284 * 20 19 18 22 22 H 1.08002 * 120.00445 * 182.58078 * 21 20 19 23 23 C 1.38816 * 119.99814 * 2.58757 * 21 20 19 24 24 N 1.31618 * 120.00108 * 353.41270 * 23 21 20 25 25 Si 1.86799 * 119.99937 * 173.41124 * 23 21 20 26 26 H 1.48501 * 109.47116 * 94.97124 * 25 23 21 27 27 H 1.48500 * 109.47470 * 214.97048 * 25 23 21 28 28 H 1.48503 * 109.47211 * 334.97512 * 25 23 21 29 29 C 1.47576 * 91.05397 * 24.55092 * 20 19 18 30 30 H 1.09001 * 109.46883 * 304.49228 * 1 2 3 31 31 H 1.09007 * 109.46746 * 64.48774 * 1 2 3 32 32 H 1.08999 * 109.47374 * 184.48918 * 1 2 3 33 33 H 0.96999 * 120.00416 * 265.00808 * 4 2 1 34 34 H 1.08003 * 126.13681 * 359.97438 * 8 7 5 35 35 H 1.08004 * 120.08906 * 359.92320 * 10 9 8 36 36 H 1.07994 * 119.68219 * 180.27296 * 13 11 10 37 37 H 1.07997 * 120.08794 * 179.97438 * 14 13 11 38 38 H 1.08999 * 112.94380 * 53.78770 * 18 2 1 39 39 H 1.08998 * 113.77308 * 336.35406 * 19 18 2 40 40 H 1.09007 * 113.76933 * 107.74290 * 19 18 2 41 41 H 0.97000 * 120.00112 * 179.97438 * 24 23 21 42 42 H 1.08997 * 113.77570 * 221.15750 * 29 20 19 43 43 H 1.08999 * 113.87173 * 89.76238 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8574 1.1619 -2.4119 7 6 2.6369 -0.7118 -3.5579 8 6 2.8089 -0.1439 -4.7802 9 6 3.2937 -1.1449 -5.6564 10 6 3.6519 -1.1466 -7.0109 11 6 4.0940 -2.2987 -7.5949 12 17 4.5315 -2.2989 -9.2749 13 6 4.2025 -3.4707 -6.8547 14 6 3.8612 -3.4923 -5.5211 15 6 3.4033 -2.3310 -4.9047 16 7 2.9968 -2.0438 -3.6226 17 1 2.9664 -2.6736 -2.8855 18 6 2.0400 -0.7213 1.2493 19 6 1.9659 0.1297 2.5299 20 7 3.3032 -0.4146 2.8462 21 6 4.0103 -0.6098 4.0026 22 1 5.0166 -0.9997 3.9610 23 6 3.4335 -0.3069 5.2284 24 7 2.2602 0.2877 5.2746 25 14 4.3225 -0.7430 6.8123 26 1 5.0967 0.4327 7.2852 27 1 3.3300 -1.1306 7.8465 28 1 5.2479 -1.8777 6.5642 29 6 3.5694 -0.6652 1.4165 30 1 -0.3633 0.5820 0.8470 31 1 -0.3633 0.4427 -0.9275 32 1 -0.3634 -1.0245 0.0804 33 1 2.2490 -1.6319 -1.1526 34 1 2.6113 0.8863 -5.0374 35 1 3.5747 -0.2398 -7.5925 36 1 4.5580 -4.3727 -7.3303 37 1 3.9485 -4.4077 -4.9546 38 1 1.6225 -1.7218 1.3624 39 1 1.9614 1.2038 2.3441 40 1 1.1863 -0.1864 3.2231 41 1 1.8569 0.4991 6.1311 42 1 4.0676 -1.6150 1.2221 43 1 4.0371 0.1737 0.9012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970249766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:36 Heat of formation + Delta-G solvation = 46.618323 kcal Electronic energy + Delta-G solvation = -26659.875591 eV Core-core repulsion = 22732.093309 eV Total energy + Delta-G solvation = -3927.782282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69739 -40.92373 -39.63117 -38.32927 -36.82484 -36.32295 -34.19563 -33.29714 -32.19399 -30.26605 -30.03803 -29.32336 -26.69173 -25.91724 -25.09270 -23.30325 -22.90967 -22.09770 -21.42177 -20.74923 -19.45197 -18.78784 -18.24606 -17.54022 -17.11273 -16.82705 -16.43102 -16.21013 -15.84436 -15.53807 -15.33913 -15.09578 -14.90966 -14.72117 -14.69296 -14.13053 -13.99958 -13.78799 -13.43366 -13.34273 -13.24148 -13.10162 -13.00222 -12.69955 -12.40157 -12.33998 -12.09188 -11.83714 -11.81100 -11.75677 -11.64744 -11.31141 -11.17399 -11.01465 -10.83335 -10.22252 -9.25143 -8.94527 -8.87455 -7.92901 -5.25109 -0.36585 0.36723 0.98827 1.22671 1.45105 1.46178 1.55661 1.76741 2.01427 2.23156 2.46127 2.70453 3.28459 3.35700 3.52015 3.62582 3.77194 3.92927 3.98845 4.11260 4.22851 4.28534 4.32094 4.42380 4.49358 4.55768 4.74178 4.79194 4.80875 4.84737 4.92659 4.96023 5.03093 5.13272 5.23762 5.28014 5.29639 5.33837 5.42912 5.52291 5.53513 5.62913 5.83020 5.92406 6.31186 6.48498 6.90610 7.03658 7.59476 8.54774 9.24532 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.001854 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.454318 B =15099.036422 C =15900.924254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.066 0.934 4 N -0.701 5.701 5 C 0.584 3.416 6 O -0.561 6.561 7 C 0.020 3.980 8 C -0.116 4.116 9 C -0.128 4.128 10 C -0.059 4.059 11 C -0.068 4.068 12 Cl -0.074 7.074 13 C -0.082 4.082 14 C -0.110 4.110 15 C 0.110 3.890 16 N -0.559 5.559 17 H 0.434 0.566 18 C -0.108 4.108 19 C 0.170 3.830 20 N -0.643 5.643 21 C -0.237 4.237 22 H 0.083 0.917 23 C -0.067 4.067 24 N -0.952 5.952 25 Si 0.978 3.022 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.126 3.874 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.411 0.589 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.109 0.891 39 H 0.012 0.988 40 H 0.046 0.954 41 H 0.249 0.751 42 H 0.063 0.937 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -10.789 -27.121 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.084 0.916 4 N -0.351 5.351 5 C 0.371 3.629 6 O -0.440 6.440 7 C -0.091 4.091 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.079 4.079 11 C -0.095 4.095 12 Cl -0.045 7.045 13 C -0.102 4.102 14 C -0.130 4.130 15 C -0.001 4.001 16 N -0.165 5.165 17 H 0.276 0.724 18 C -0.128 4.128 19 C 0.044 3.956 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.100 0.900 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.806 3.194 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.190 1.190 29 C 0.001 3.999 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.247 0.753 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.127 0.873 39 H 0.030 0.970 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.282 -10.016 -26.759 28.573 hybrid contribution 0.504 -0.079 1.437 1.525 sum 0.786 -10.095 -25.322 27.272 Atomic orbital electron populations 1.22059 0.93758 1.03210 1.02064 1.20841 0.94898 0.96079 0.82429 0.91583 1.45792 1.66228 1.14357 1.08725 1.17362 0.77390 0.85892 0.82289 1.90849 1.51879 1.16381 1.84866 1.19930 1.08850 0.84807 0.95481 1.21023 1.02635 1.00022 0.90623 1.18123 1.07177 0.93850 0.94160 1.20361 0.96854 0.98069 0.92604 1.20405 1.06941 0.95963 0.86237 1.98369 1.91779 1.98866 1.15520 1.21053 0.98801 0.97479 0.92912 1.20344 1.01903 0.96349 0.94437 1.18607 1.00746 0.96187 0.84563 1.41852 1.55697 1.08788 1.10174 0.72426 1.23458 0.95952 1.00498 0.92863 1.22147 0.88232 0.93812 0.91420 1.46473 1.17014 1.72330 1.01167 1.19426 0.97297 1.35874 0.83931 0.89957 1.25626 0.98308 1.01367 1.00660 1.70001 1.18736 1.46897 1.24494 0.85081 0.77281 0.77917 0.79150 1.21796 1.21856 1.19042 1.22689 0.94840 0.98488 0.83844 0.91675 0.92679 0.90638 0.75310 0.82658 0.83999 0.82234 0.81921 0.87290 0.97038 0.93537 0.94198 0.91859 0.95139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.43 71.98 0.68 -3.12 16 2 C 0.16 4.49 2.29 44.99 0.10 4.59 16 3 H 0.07 2.23 7.49 -2.39 -0.02 2.21 16 4 N -0.70 -15.08 4.95 -446.12 -2.21 -17.29 16 5 C 0.58 14.70 7.76 86.55 0.67 15.37 16 6 O -0.56 -18.77 16.50 -4.19 -0.07 -18.84 16 7 C 0.02 0.40 6.97 39.91 0.28 0.68 16 8 C -0.12 -2.45 10.53 22.55 0.24 -2.21 16 9 C -0.13 -2.38 6.16 -21.36 -0.13 -2.52 16 10 C -0.06 -0.98 9.81 22.32 0.22 -0.76 16 11 C -0.07 -0.99 6.28 22.06 0.14 -0.86 16 12 Cl -0.07 -1.04 28.93 -2.72 -0.08 -1.12 16 13 C -0.08 -0.93 9.79 22.33 0.22 -0.72 16 14 C -0.11 -1.19 10.07 22.37 0.23 -0.97 16 15 C 0.11 1.70 7.25 39.13 0.28 1.98 16 16 N -0.56 -7.90 6.08 -177.17 -1.08 -8.97 16 17 H 0.43 3.41 8.12 -92.71 -0.75 2.66 16 18 C -0.11 -3.48 3.35 -10.13 -0.03 -3.52 16 19 C 0.17 7.75 7.02 86.44 0.61 8.36 16 20 N -0.64 -32.19 3.70 -716.18 -2.65 -34.85 16 21 C -0.24 -13.15 10.69 84.03 0.90 -12.25 16 22 H 0.08 4.37 7.84 -2.91 -0.02 4.34 16 23 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 24 N -0.95 -57.05 11.43 21.65 0.25 -56.80 16 25 Si 0.98 45.26 29.56 68.60 2.03 47.29 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 29 C 0.13 4.70 8.38 86.49 0.73 5.42 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.41 6.07 7.66 -92.71 -0.71 5.36 16 34 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 35 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 37 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 38 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.01 0.57 8.04 -2.39 -0.02 0.55 16 40 H 0.05 2.37 7.20 -2.38 -0.02 2.35 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -72.96 379.45 1.38 -71.58 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -0.40 Total: 12.82 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.59 Total: 6.19 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -5.69 Total: -117.91 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.07 Total: -18.84 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -72.96 1.38 -71.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970249766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.200 kcal (2) G-P(sol) polarization free energy of solvation -72.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds