Wall clock time and date at job start Wed Apr 1 2020 05:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.00080 * 2 1 4 4 C 1.54322 * 109.88129 * 121.09540 * 2 1 3 5 5 H 1.09003 * 110.87283 * 23.18099 * 4 2 1 6 6 N 1.46496 * 110.72122 * 259.97106 * 4 2 1 7 7 C 1.36942 * 119.99959 * 160.02360 * 6 4 2 8 8 H 1.07997 * 120.00119 * 0.02562 * 7 6 4 9 9 C 1.38806 * 119.99573 * 180.02562 * 7 6 4 10 10 N 1.31621 * 120.00582 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99674 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47020 * 270.00076 * 11 9 7 13 13 H 1.48504 * 109.46872 * 30.00039 * 11 9 7 14 14 H 1.48499 * 109.46879 * 149.99814 * 11 9 7 15 15 C 1.55160 * 102.94322 * 141.60757 * 4 2 1 16 16 C 1.54912 * 101.58030 * 324.49792 * 15 4 2 17 17 N 1.47025 * 109.88221 * 238.90149 * 2 1 3 18 18 C 1.34785 * 125.64475 * 61.67709 * 17 2 1 19 19 O 1.21602 * 120.00145 * 358.63116 * 18 17 2 20 20 C 1.47412 * 119.99709 * 178.62805 * 18 17 2 21 21 C 1.41364 * 126.40560 * 8.35937 * 20 18 17 22 22 N 1.30465 * 108.07865 * 179.81473 * 21 20 18 23 23 N 1.39938 * 108.92263 * 0.45016 * 22 21 20 24 24 C 1.39366 * 125.77433 * 179.71220 * 23 22 21 25 25 N 1.29577 * 124.93504 * 179.69476 * 24 23 22 26 26 C 1.31844 * 116.96829 * 179.81624 * 25 24 23 27 27 C 1.33570 * 114.55735 * 0.46952 * 26 25 24 28 28 S 1.70972 * 124.94453 * 359.97438 * 24 23 22 29 29 C 1.34644 * 108.44402 * 359.70740 * 23 22 21 30 30 H 1.08996 * 109.47331 * 298.90156 * 1 2 3 31 31 H 1.09003 * 109.47101 * 58.90870 * 1 2 3 32 32 H 1.09004 * 109.47530 * 178.90184 * 1 2 3 33 33 H 0.97000 * 119.99889 * 340.02620 * 6 4 2 34 34 H 0.96996 * 119.99874 * 179.97438 * 10 9 7 35 35 H 1.09004 * 111.00023 * 82.56915 * 15 4 2 36 36 H 1.08999 * 111.00598 * 206.42185 * 15 4 2 37 37 H 1.09004 * 110.36758 * 155.84091 * 16 15 4 38 38 H 1.08992 * 110.36688 * 278.16536 * 16 15 4 39 39 H 1.07994 * 125.95921 * 359.97163 * 21 20 18 40 40 H 1.08000 * 122.71905 * 180.22935 * 26 25 24 41 41 H 1.08006 * 125.98620 * 179.73767 * 27 26 25 42 42 H 1.07998 * 126.31700 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 1.3064 -1.4459 1.6210 6 7 2.4555 0.1960 2.2875 7 6 2.5575 -0.2226 3.5873 8 1 2.3430 -1.2499 3.8422 9 6 2.9366 0.6735 4.5773 10 7 3.1985 1.9254 4.2666 11 14 3.0751 0.1026 6.3506 12 1 1.7687 0.2850 7.0327 13 1 3.4528 -1.3333 6.3802 14 1 4.1138 0.9022 7.0483 15 6 3.2875 -1.5143 0.6924 16 6 2.8144 -1.8795 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8084 -0.3613 -2.4658 19 8 1.1230 0.6106 -2.7191 20 6 2.3972 -1.1537 -3.5605 21 6 3.0707 -2.3900 -3.4332 22 7 3.4398 -2.7745 -4.6241 23 7 3.0360 -1.8127 -5.5569 24 6 3.2559 -1.8687 -6.9320 25 7 2.8696 -0.9706 -7.7824 26 6 3.1655 -1.1808 -9.0499 27 6 3.8266 -2.3175 -9.2844 28 16 4.0687 -3.1355 -7.7430 29 6 2.3991 -0.8242 -4.9011 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3634 -1.0275 -0.0197 33 1 2.6484 1.1186 2.0585 34 1 3.4631 2.5516 4.9585 35 1 4.1654 -0.8689 0.6604 36 1 3.4851 -2.4111 1.2797 37 1 3.6715 -2.0339 -1.3923 38 1 2.1886 -2.7715 -0.7128 39 1 3.2465 -2.9244 -2.5114 40 1 2.8919 -0.4918 -9.8352 41 1 4.1552 -2.6728 -10.2500 42 1 1.9695 0.0630 -5.3424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987336433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:42 Heat of formation + Delta-G solvation = 135.172200 kcal Electronic energy + Delta-G solvation = -27071.391987 eV Core-core repulsion = 23181.786147 eV Total energy + Delta-G solvation = -3889.605841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.08146 -40.19547 -39.59953 -37.30234 -34.35374 -33.78610 -31.75298 -31.00605 -30.68228 -29.85460 -28.98860 -26.17408 -25.30827 -23.94116 -23.33705 -22.33802 -21.81552 -20.39604 -20.00820 -19.63787 -18.62584 -17.35401 -17.21713 -16.49973 -16.33508 -16.00257 -15.55444 -15.07032 -14.91494 -14.70943 -14.31396 -13.94513 -13.75668 -13.66279 -13.39789 -13.17756 -12.85199 -12.76159 -12.17646 -12.05259 -11.85145 -11.63389 -11.43530 -11.13628 -11.04273 -10.98583 -10.82148 -10.59516 -10.43999 -10.25267 -10.02642 -9.95142 -9.78876 -9.63893 -9.59478 -8.94730 -8.78935 -8.38062 -7.03412 -5.81783 -3.12313 -0.21173 0.36029 1.08777 1.30124 1.55333 1.79910 2.35276 3.08972 3.41027 3.41615 3.46349 3.48072 3.82861 4.22842 4.44488 4.54424 4.66872 4.68569 4.85692 4.95705 4.98585 5.11232 5.25943 5.37606 5.44531 5.46618 5.54506 5.67346 5.78372 5.85159 5.97108 6.09964 6.12824 6.29298 6.29528 6.46417 6.58456 6.63516 6.73732 6.75897 6.92740 7.17042 7.65442 7.74638 8.34346 8.36724 9.47052 10.01633 10.36141 11.40310 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.029295 B = 0.001987 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.560837 B =14088.654272 C =14549.406760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.079 0.921 4 C 0.176 3.824 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.281 1.281 14 H -0.292 1.292 15 C -0.156 4.156 16 C 0.084 3.916 17 N -0.602 5.602 18 C 0.607 3.393 19 O -0.544 6.544 20 C -0.267 4.267 21 C 0.095 3.905 22 N -0.289 5.289 23 N -0.301 5.301 24 C 0.265 3.735 25 N -0.497 5.497 26 C 0.068 3.932 27 C -0.278 4.278 28 S 0.221 5.779 29 C 0.159 3.841 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.218 0.782 40 H 0.188 0.812 41 H 0.188 0.812 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 -12.191 -26.692 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 H 0.097 0.903 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.218 1.218 15 C -0.197 4.197 16 C -0.039 4.039 17 N -0.335 5.335 18 C 0.395 3.605 19 O -0.423 6.423 20 C -0.281 4.281 21 C -0.095 4.095 22 N -0.107 5.107 23 N -0.077 5.077 24 C -0.099 4.099 25 N -0.217 5.217 26 C -0.084 4.084 27 C -0.418 4.418 28 S 0.474 5.526 29 C 0.010 3.990 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.205 0.795 41 H 0.205 0.795 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.841 -13.106 -26.971 30.044 hybrid contribution -0.393 1.301 0.688 1.523 sum 1.448 -11.805 -26.284 28.849 Atomic orbital electron populations 1.22054 0.94773 1.01669 1.02797 1.21910 0.94493 0.96895 0.84031 0.90289 1.21249 0.93509 0.91639 0.87151 0.91643 1.42350 1.80929 1.09137 1.03105 1.19192 1.39251 0.95136 0.83817 0.90967 1.24771 1.02116 0.95661 0.98156 1.69664 1.52497 1.02995 1.32537 0.86184 0.77342 0.77596 0.84981 1.21668 1.20703 1.21796 1.23597 1.01538 1.01876 0.92719 1.22806 0.94781 0.88772 0.97523 1.48277 1.52010 1.28554 1.04623 1.16637 0.80022 0.83328 0.80500 1.90779 1.39966 1.28247 1.83259 1.20412 1.14019 1.00084 0.93603 1.25230 0.93349 0.94463 0.96447 1.77401 1.24239 1.11206 0.97810 1.44656 1.43419 1.17461 1.02172 1.22814 1.02928 0.97619 0.86563 1.66132 1.24212 1.29002 1.02337 1.21517 0.98448 0.97218 0.91184 1.27303 1.10623 1.00902 1.02992 1.84361 1.51226 1.20258 0.96796 1.23209 0.91669 0.92981 0.91115 0.91126 0.91857 0.93057 0.77960 0.93377 0.90471 0.90407 0.90558 0.91188 0.76603 0.79532 0.79515 0.78502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.10 37.16 0.34 -2.21 16 2 C 0.13 2.25 3.21 -66.95 -0.22 2.04 16 3 H 0.08 1.55 7.68 -51.93 -0.40 1.15 16 4 C 0.18 3.25 3.11 -66.10 -0.21 3.04 16 5 H 0.07 1.20 7.84 -51.93 -0.41 0.80 16 6 N -0.71 -16.96 5.25 -51.65 -0.27 -17.23 16 7 C -0.24 -6.40 9.98 -15.06 -0.15 -6.55 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 11 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C -0.16 -2.40 6.77 -24.58 -0.17 -2.57 16 16 C 0.08 1.02 5.27 -2.53 -0.01 1.01 16 17 N -0.60 -9.08 3.06 -164.28 -0.50 -9.58 16 18 C 0.61 9.59 7.64 -12.52 -0.10 9.49 16 19 O -0.54 -10.28 15.91 5.28 0.08 -10.20 16 20 C -0.27 -3.49 6.06 -105.04 -0.64 -4.13 16 21 C 0.09 1.04 10.29 -16.94 -0.17 0.86 16 22 N -0.29 -3.39 12.30 30.88 0.38 -3.01 16 23 N -0.30 -3.61 3.74 -13.35 -0.05 -3.66 16 24 C 0.27 2.83 8.07 -87.03 -0.70 2.13 16 25 N -0.50 -5.11 10.34 -15.04 -0.16 -5.27 16 26 C 0.07 0.47 11.34 -19.18 -0.22 0.25 16 27 C -0.28 -1.48 11.35 29.10 0.33 -1.15 16 28 S 0.22 1.65 23.05 -107.50 -2.48 -0.82 16 29 C 0.16 1.99 11.09 -16.39 -0.18 1.81 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.09 6.86 -51.93 -0.36 0.73 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.39 9.95 7.51 -40.82 -0.31 9.64 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 0.76 5.27 -51.93 -0.27 0.49 16 38 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 39 H 0.22 1.77 4.80 -52.49 -0.25 1.52 16 40 H 0.19 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.19 0.38 8.06 -52.48 -0.42 -0.04 16 42 H 0.20 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -33.16 367.24 -8.86 -42.02 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.92 Total: 8.56 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.19 Total: 3.63 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 0.12 Total: -65.43 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.16 -8.86 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987336433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.191 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds