Wall clock time and date at job start Wed Apr 1 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.00080 * 2 1 4 4 C 1.54322 * 109.88129 * 121.09540 * 2 1 3 5 5 H 1.09003 * 110.87283 * 23.18099 * 4 2 1 6 6 N 1.46496 * 110.72122 * 259.97106 * 4 2 1 7 7 C 1.36942 * 119.99959 * 160.02360 * 6 4 2 8 8 H 1.07997 * 120.00119 * 0.02562 * 7 6 4 9 9 C 1.38806 * 119.99573 * 180.02562 * 7 6 4 10 10 N 1.31621 * 120.00582 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99674 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47020 * 270.00076 * 11 9 7 13 13 H 1.48504 * 109.46872 * 30.00039 * 11 9 7 14 14 H 1.48499 * 109.46879 * 149.99814 * 11 9 7 15 15 C 1.55160 * 102.94322 * 141.60757 * 4 2 1 16 16 C 1.54912 * 101.58030 * 324.49792 * 15 4 2 17 17 N 1.47025 * 109.88221 * 238.90149 * 2 1 3 18 18 C 1.34785 * 125.64475 * 61.67709 * 17 2 1 19 19 O 1.21602 * 120.00145 * 358.63116 * 18 17 2 20 20 C 1.47412 * 119.99709 * 178.62805 * 18 17 2 21 21 C 1.41364 * 126.40560 * 8.35937 * 20 18 17 22 22 N 1.30465 * 108.07865 * 179.81473 * 21 20 18 23 23 N 1.39938 * 108.92263 * 0.45016 * 22 21 20 24 24 C 1.39366 * 125.77433 * 179.71220 * 23 22 21 25 25 N 1.29577 * 124.93504 * 179.69476 * 24 23 22 26 26 C 1.31844 * 116.96829 * 179.81624 * 25 24 23 27 27 C 1.33570 * 114.55735 * 0.46952 * 26 25 24 28 28 S 1.70972 * 124.94453 * 359.97438 * 24 23 22 29 29 C 1.34644 * 108.44402 * 359.70740 * 23 22 21 30 30 H 1.08996 * 109.47331 * 298.90156 * 1 2 3 31 31 H 1.09003 * 109.47101 * 58.90870 * 1 2 3 32 32 H 1.09004 * 109.47530 * 178.90184 * 1 2 3 33 33 H 0.97000 * 119.99889 * 340.02620 * 6 4 2 34 34 H 0.96996 * 119.99874 * 179.97438 * 10 9 7 35 35 H 1.09004 * 111.00023 * 82.56915 * 15 4 2 36 36 H 1.08999 * 111.00598 * 206.42185 * 15 4 2 37 37 H 1.09004 * 110.36758 * 155.84091 * 16 15 4 38 38 H 1.08992 * 110.36688 * 278.16536 * 16 15 4 39 39 H 1.07994 * 125.95921 * 359.97163 * 21 20 18 40 40 H 1.08000 * 122.71905 * 180.22935 * 26 25 24 41 41 H 1.08006 * 125.98620 * 179.73767 * 27 26 25 42 42 H 1.07998 * 126.31700 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 1.3064 -1.4459 1.6210 6 7 2.4555 0.1960 2.2875 7 6 2.5575 -0.2226 3.5873 8 1 2.3430 -1.2499 3.8422 9 6 2.9366 0.6735 4.5773 10 7 3.1985 1.9254 4.2666 11 14 3.0751 0.1026 6.3506 12 1 1.7687 0.2850 7.0327 13 1 3.4528 -1.3333 6.3802 14 1 4.1138 0.9022 7.0483 15 6 3.2875 -1.5143 0.6924 16 6 2.8144 -1.8795 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8084 -0.3613 -2.4658 19 8 1.1230 0.6106 -2.7191 20 6 2.3972 -1.1537 -3.5605 21 6 3.0707 -2.3900 -3.4332 22 7 3.4398 -2.7745 -4.6241 23 7 3.0360 -1.8127 -5.5569 24 6 3.2559 -1.8687 -6.9320 25 7 2.8696 -0.9706 -7.7824 26 6 3.1655 -1.1808 -9.0499 27 6 3.8266 -2.3175 -9.2844 28 16 4.0687 -3.1355 -7.7430 29 6 2.3991 -0.8242 -4.9011 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3634 -1.0275 -0.0197 33 1 2.6484 1.1186 2.0585 34 1 3.4631 2.5516 4.9585 35 1 4.1654 -0.8689 0.6604 36 1 3.4851 -2.4111 1.2797 37 1 3.6715 -2.0339 -1.3923 38 1 2.1886 -2.7715 -0.7128 39 1 3.2465 -2.9244 -2.5114 40 1 2.8919 -0.4918 -9.8352 41 1 4.1552 -2.6728 -10.2500 42 1 1.9695 0.0630 -5.3424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987336433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:41 Heat of formation + Delta-G solvation = 113.260033 kcal Electronic energy + Delta-G solvation = -27072.342170 eV Core-core repulsion = 23181.786147 eV Total energy + Delta-G solvation = -3890.556023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.96260 -41.11451 -40.56326 -38.67074 -35.94864 -34.78415 -33.31695 -32.35609 -31.72311 -30.80244 -30.25768 -27.02771 -26.81058 -25.01134 -24.87090 -23.35802 -22.79454 -21.60188 -20.89676 -20.72598 -19.59098 -19.08388 -18.08183 -17.64915 -17.25147 -17.09758 -16.56599 -16.26996 -16.13980 -15.67793 -15.46057 -15.36450 -14.95682 -14.70520 -14.51601 -14.45804 -14.12686 -14.02895 -13.59336 -13.22992 -13.04630 -12.85191 -12.63088 -12.54789 -12.47323 -12.40103 -12.14896 -12.03720 -11.76174 -11.66978 -11.46641 -11.08898 -10.98344 -10.84736 -10.57523 -10.45674 -9.68826 -9.44806 -8.98304 -7.90421 -5.20032 -0.88799 -0.24650 0.46154 0.52107 0.84169 0.90134 1.51818 1.53230 1.61319 1.73397 1.89262 2.27284 2.60462 3.11946 3.35744 3.42972 3.57951 3.65787 3.77507 3.86864 4.04915 4.14136 4.20253 4.30698 4.35123 4.41321 4.42145 4.45496 4.55945 4.72117 4.73174 4.94942 4.96129 5.04708 5.09807 5.27015 5.29689 5.39630 5.45634 5.51679 5.59789 5.97557 6.29906 6.50010 6.55686 7.12645 7.36393 8.09268 8.32427 9.33152 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.029295 B = 0.001987 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.560837 B =14088.654272 C =14549.406760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.136 3.864 3 H 0.046 0.954 4 C 0.170 3.830 5 H 0.074 0.926 6 N -0.730 5.730 7 C -0.232 4.232 8 H 0.086 0.914 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.291 1.291 13 H -0.264 1.264 14 H -0.302 1.302 15 C -0.147 4.147 16 C 0.089 3.911 17 N -0.601 5.601 18 C 0.606 3.394 19 O -0.585 6.585 20 C -0.281 4.281 21 C 0.105 3.895 22 N -0.295 5.295 23 N -0.300 5.300 24 C 0.216 3.784 25 N -0.517 5.517 26 C 0.045 3.955 27 C -0.246 4.246 28 S 0.243 5.757 29 C 0.155 3.845 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.246 0.754 40 H 0.214 0.786 41 H 0.227 0.773 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -15.610 -28.710 32.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.064 0.936 4 C 0.061 3.939 5 H 0.092 0.908 6 N -0.369 5.369 7 C -0.363 4.363 8 H 0.104 0.896 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.218 1.218 13 H -0.188 1.188 14 H -0.229 1.229 15 C -0.188 4.188 16 C -0.033 4.033 17 N -0.333 5.333 18 C 0.396 3.604 19 O -0.467 6.467 20 C -0.296 4.296 21 C -0.085 4.085 22 N -0.112 5.112 23 N -0.075 5.075 24 C -0.146 4.146 25 N -0.238 5.238 26 C -0.105 4.105 27 C -0.385 4.385 28 S 0.494 5.506 29 C 0.005 3.995 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.261 0.739 40 H 0.231 0.769 41 H 0.243 0.757 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.537 -16.617 -29.037 33.551 hybrid contribution -0.598 2.314 1.030 2.603 sum 1.939 -14.303 -28.006 31.507 Atomic orbital electron populations 1.21947 0.94168 1.02557 1.01637 1.21624 0.94899 0.95442 0.84886 0.93612 1.21456 0.95120 0.91075 0.86269 0.90797 1.42537 1.81298 1.09361 1.03703 1.19628 1.36528 0.95400 0.84769 0.89634 1.25580 1.03446 0.95911 1.02154 1.69837 1.54983 1.04257 1.33226 0.85148 0.76655 0.77755 0.80240 1.21798 1.18814 1.22887 1.23407 0.98922 1.01519 0.94948 1.23037 0.96081 0.88568 0.95598 1.48266 1.52085 1.29139 1.03843 1.16988 0.79434 0.82949 0.81002 1.90752 1.41921 1.30155 1.83875 1.20126 1.15561 1.01086 0.92799 1.25548 0.92290 0.93433 0.97183 1.77361 1.24497 1.11454 0.97937 1.44738 1.42830 1.16977 1.02988 1.23073 1.05783 0.99604 0.86169 1.66114 1.24281 1.29715 1.03708 1.22007 0.99330 0.98630 0.90569 1.27823 1.07819 0.99337 1.03560 1.84251 1.49819 1.19086 0.97396 1.23227 0.91678 0.93265 0.91328 0.92286 0.92970 0.91043 0.79785 0.94248 0.92606 0.88648 0.87762 0.87522 0.73869 0.76946 0.75651 0.78759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.10 71.98 0.65 -4.17 16 2 C 0.14 4.77 3.21 45.34 0.15 4.91 16 3 H 0.05 1.91 7.68 -2.39 -0.02 1.89 16 4 C 0.17 6.17 3.11 46.18 0.14 6.31 16 5 H 0.07 2.58 7.84 -2.39 -0.02 2.56 16 6 N -0.73 -35.18 5.25 -317.33 -1.67 -36.85 16 7 C -0.23 -12.15 9.98 84.03 0.84 -11.31 16 8 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 10 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 11 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 15 C -0.15 -4.24 6.77 31.99 0.22 -4.03 16 16 C 0.09 1.88 5.27 86.86 0.46 2.33 16 17 N -0.60 -17.64 3.06 -791.91 -2.43 -20.07 16 18 C 0.61 19.17 7.64 86.66 0.66 19.83 16 19 O -0.59 -22.97 15.91 -4.04 -0.06 -23.03 16 20 C -0.28 -7.15 6.06 -20.14 -0.12 -7.28 16 21 C 0.10 2.06 10.29 85.67 0.88 2.94 16 22 N -0.29 -6.41 12.30 -56.22 -0.69 -7.10 16 23 N -0.30 -7.00 3.74 -196.16 -0.73 -7.74 16 24 C 0.22 4.40 8.07 179.09 1.45 5.85 16 25 N -0.52 -10.18 10.34 -201.49 -2.08 -12.27 16 26 C 0.05 0.52 11.34 83.63 0.95 1.47 16 27 C -0.25 -1.78 11.35 66.76 0.76 -1.02 16 28 S 0.24 3.09 23.05 -56.49 -1.30 1.78 16 29 C 0.16 3.91 11.09 84.22 0.93 4.85 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.85 6.86 -2.39 -0.02 1.83 16 32 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.37 19.96 7.51 -92.71 -0.70 19.26 16 34 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.10 1.69 5.27 -2.38 -0.01 1.68 16 38 H 0.11 1.60 8.02 -2.39 -0.02 1.58 16 39 H 0.25 3.01 4.80 -2.91 -0.01 2.99 16 40 H 0.21 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.23 -0.24 8.06 -2.91 -0.02 -0.26 16 42 H 0.20 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -75.49 367.24 2.16 -73.34 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.38 Total: 27.05 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 8.43 Total: 16.72 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -7.32 Total: -142.91 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.30 Total: 1.78 kcal Total: -75.49 2.16 -73.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987336433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.599 kcal (2) G-P(sol) polarization free energy of solvation -75.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds