Wall clock time and date at job start Wed Apr 1 2020 04:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.32747 * 2 1 4 4 C 1.54914 * 110.36707 * 122.23455 * 2 1 3 5 5 C 1.55158 * 101.57863 * 155.95582 * 4 2 1 6 6 H 1.09002 * 110.71598 * 83.04414 * 5 4 2 7 7 N 1.46506 * 110.71681 * 206.13384 * 5 4 2 8 8 C 1.36937 * 119.99708 * 204.99950 * 7 5 4 9 9 H 1.07996 * 120.00283 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99959 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99483 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00333 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46769 * 60.00182 * 12 10 8 14 14 H 1.48499 * 109.47227 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47358 * 300.00630 * 12 10 8 16 16 C 1.54320 * 102.94699 * 324.50135 * 5 4 2 17 17 N 1.47024 * 107.27028 * 22.18931 * 16 5 4 18 18 C 1.34772 * 125.64692 * 181.09397 * 17 16 5 19 19 O 1.21630 * 119.99906 * 179.97438 * 18 17 16 20 20 C 1.47346 * 120.00378 * 359.96568 * 18 17 16 21 21 C 1.36295 * 122.54494 * 179.73595 * 20 18 17 22 22 S 1.71009 * 109.02143 * 179.86121 * 21 20 18 23 23 C 1.75978 * 90.63150 * 0.32743 * 22 21 20 24 24 C 1.47374 * 125.23615 * 179.84046 * 23 22 21 25 25 N 1.31607 * 125.86124 * 179.65130 * 24 23 22 26 26 C 1.33630 * 109.25034 * 179.83036 * 25 24 23 27 27 C 1.35007 * 108.41668 * 0.43388 * 26 25 24 28 28 N 1.36590 * 125.86043 * 359.95927 * 24 23 22 29 29 H 0.97004 * 126.50443 * 0.03250 * 28 24 23 30 30 N 1.29953 * 109.52829 * 359.80391 * 23 22 21 31 31 H 1.08998 * 109.47097 * 297.76481 * 1 2 3 32 32 H 1.09004 * 109.46836 * 57.76405 * 1 2 3 33 33 H 1.08997 * 109.47360 * 177.76414 * 1 2 3 34 34 H 1.08995 * 110.99899 * 37.88541 * 4 2 1 35 35 H 1.08997 * 111.00600 * 274.03191 * 4 2 1 36 36 H 0.97000 * 120.00117 * 25.00356 * 7 5 4 37 37 H 0.97000 * 119.99481 * 179.97438 * 11 10 8 38 38 H 1.08994 * 109.88551 * 141.61409 * 16 5 4 39 39 H 1.09009 * 109.88208 * 262.77629 * 16 5 4 40 40 H 1.08002 * 125.49151 * 359.97438 * 21 20 18 41 41 H 1.07994 * 125.79241 * 180.17267 * 26 25 24 42 42 H 1.08004 * 126.46961 * 179.75785 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7746 1.2285 5 6 3.4789 -1.1965 0.7364 6 1 4.1949 -0.3869 0.8778 7 7 3.9272 -2.4088 1.4262 8 6 5.2656 -2.6701 1.5510 9 1 5.9906 -1.9825 1.1413 10 6 5.6905 -3.8185 2.2050 11 7 4.8069 -4.6562 2.7048 12 14 7.5162 -4.1747 2.3760 13 1 8.1674 -3.0720 3.1277 14 1 7.7048 -5.4526 3.1085 15 1 8.1279 -4.2829 1.0272 16 6 3.2524 -1.4745 -0.7645 17 7 2.0453 -0.7381 -1.1675 18 6 1.4999 -0.7383 -2.3999 19 8 0.4950 -0.0894 -2.6204 20 6 2.1210 -1.5245 -3.4804 21 6 1.6105 -1.5661 -4.7434 22 16 2.5987 -2.5718 -5.7111 23 6 3.6520 -2.8910 -4.3380 24 6 4.8467 -3.7535 -4.3652 25 7 5.6462 -3.9955 -3.3482 26 6 6.6197 -4.8227 -3.7403 27 6 6.4376 -5.1065 -5.0476 28 7 5.3177 -4.4340 -5.4518 29 1 4.9313 -4.4390 -6.3415 30 7 3.2146 -2.2487 -3.2964 31 1 -0.3633 0.4787 0.9093 32 1 -0.3633 0.5482 -0.8693 33 1 -0.3634 -1.0268 -0.0401 34 1 1.4522 -1.6476 1.4413 35 1 2.1381 -0.1247 2.1007 36 1 3.2761 -3.0262 1.7945 37 1 5.1038 -5.4588 3.1615 38 1 4.1095 -1.1246 -1.3398 39 1 3.1061 -2.5426 -0.9258 40 1 0.7256 -1.0462 -5.0796 41 1 7.4192 -5.1971 -3.1182 42 1 7.0590 -5.7444 -5.6587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989213379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:30 Heat of formation + Delta-G solvation = 78.681183 kcal Electronic energy + Delta-G solvation = -28109.980964 eV Core-core repulsion = 24217.925489 eV Total energy + Delta-G solvation = -3892.055475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.97241 -41.74982 -40.12406 -38.61555 -35.95061 -33.67722 -33.30305 -33.09115 -32.37255 -30.09178 -29.97072 -27.13429 -26.62137 -25.81851 -24.71890 -22.76429 -22.51817 -21.73941 -21.26184 -20.15839 -19.57339 -19.21745 -18.70853 -17.62205 -17.17268 -16.93317 -16.62200 -16.27606 -15.96940 -15.56786 -15.40771 -15.13929 -14.93965 -14.77633 -14.58163 -14.44738 -14.25705 -14.23890 -13.49087 -13.30990 -13.15846 -13.06304 -12.88738 -12.76321 -12.37409 -12.17363 -12.10826 -11.70545 -11.55188 -11.30855 -11.07058 -11.03726 -11.02137 -11.00265 -10.69452 -10.41221 -9.67137 -9.10259 -9.01442 -7.89944 -5.19085 -0.91407 -0.11795 0.27483 0.45925 1.28748 1.48459 1.53489 1.58592 1.68976 1.97962 2.07965 2.36462 2.60879 2.97387 3.34151 3.41309 3.63983 3.84057 3.91726 3.98825 4.03045 4.12312 4.20452 4.33817 4.35228 4.44183 4.50530 4.54563 4.62670 4.76774 4.86981 4.94845 4.99949 5.14034 5.22457 5.25220 5.35087 5.53451 5.57105 5.64762 6.20008 6.30088 6.39959 6.45288 7.00976 7.05766 7.37895 8.08020 8.33184 9.33276 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.007182 B = 0.005267 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3897.960305 B = 5314.617599 C = 8935.340674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 H 0.092 0.908 4 C -0.124 4.124 5 C 0.161 3.839 6 H 0.068 0.932 7 N -0.720 5.720 8 C -0.236 4.236 9 H 0.072 0.928 10 C -0.069 4.069 11 N -0.969 5.969 12 Si 0.969 3.031 13 H -0.276 1.276 14 H -0.294 1.294 15 H -0.281 1.281 16 C 0.120 3.880 17 N -0.595 5.595 18 C 0.598 3.402 19 O -0.558 6.558 20 C -0.013 4.013 21 C -0.206 4.206 22 S 0.299 5.701 23 C 0.087 3.913 24 C 0.228 3.772 25 N -0.482 5.482 26 C -0.066 4.066 27 C 0.018 3.982 28 N -0.540 5.540 29 H 0.439 0.561 30 N -0.429 5.429 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.374 0.626 37 H 0.250 0.750 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.216 0.784 41 H 0.178 0.822 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 3.292 -23.478 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.032 3.968 3 H 0.110 0.890 4 C -0.162 4.162 5 C 0.050 3.950 6 H 0.086 0.914 7 N -0.359 5.359 8 C -0.368 4.368 9 H 0.090 0.910 10 C -0.261 4.261 11 N -0.620 5.620 12 Si 0.798 3.202 13 H -0.202 1.202 14 H -0.221 1.221 15 H -0.207 1.207 16 C -0.006 4.006 17 N -0.326 5.326 18 C 0.385 3.615 19 O -0.439 6.439 20 C -0.151 4.151 21 C -0.350 4.350 22 S 0.556 5.444 23 C -0.190 4.190 24 C -0.034 4.034 25 N -0.203 5.203 26 C -0.217 4.217 27 C -0.120 4.120 28 N -0.148 5.148 29 H 0.282 0.718 30 N -0.145 5.145 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.207 0.793 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.232 0.768 41 H 0.196 0.804 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.568 3.632 -23.369 23.917 hybrid contribution 0.426 -0.652 0.278 0.827 sum -3.142 2.980 -23.091 23.494 Atomic orbital electron populations 1.22030 0.92957 1.01918 1.03737 1.22089 0.95739 0.95681 0.83288 0.89045 1.23083 0.95430 1.00354 0.97372 1.21457 0.94952 0.89382 0.89204 0.91356 1.42433 1.04205 1.23566 1.65686 1.19507 0.84545 1.04230 1.28493 0.91025 1.25474 1.01572 0.97459 1.01602 1.69816 1.33963 1.13916 1.44296 0.85278 0.80542 0.76846 0.77554 1.20179 1.22056 1.20692 1.22723 0.85039 0.95317 0.97506 1.48498 1.28032 1.47132 1.08929 1.17014 0.82922 0.80620 0.80959 1.90698 1.25486 1.45392 1.82342 1.20394 0.95407 1.03848 0.95405 1.27244 1.06974 1.04655 0.96100 1.82889 1.14480 1.37209 1.09780 1.24270 0.98980 1.02143 0.93563 1.19505 0.96933 1.01974 0.84990 1.70535 1.05023 1.15664 1.29124 1.22923 1.00875 1.02041 0.95836 1.23657 0.90747 1.00689 0.96880 1.43258 1.22824 1.36590 1.12102 0.71824 1.67012 1.10951 1.06976 1.29582 0.89439 0.90943 0.94147 0.91608 0.87918 0.79332 0.94137 0.93179 0.93427 0.76751 0.80439 0.74210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.60 71.98 0.62 -3.64 16 2 C 0.13 4.25 3.76 45.47 0.17 4.42 16 3 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 4 C -0.12 -4.24 6.13 31.99 0.20 -4.04 16 5 C 0.16 6.84 3.61 46.18 0.17 7.00 16 6 H 0.07 2.86 8.09 -2.39 -0.02 2.84 16 7 N -0.72 -38.21 5.15 -317.32 -1.63 -39.84 16 8 C -0.24 -13.71 9.96 84.03 0.84 -12.87 16 9 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 10 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 11 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 12 Si 0.97 48.02 29.55 68.60 2.03 50.04 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 15 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 16 C 0.12 5.11 5.20 86.73 0.45 5.56 16 17 N -0.59 -21.95 3.24 -792.06 -2.57 -24.52 16 18 C 0.60 21.57 7.61 86.64 0.66 22.23 16 19 O -0.56 -20.38 14.40 -4.13 -0.06 -20.44 16 20 C -0.01 -0.43 6.61 41.00 0.27 -0.16 16 21 C -0.21 -4.63 10.63 67.37 0.72 -3.91 16 22 S 0.30 4.75 23.17 -56.49 -1.31 3.44 16 23 C 0.09 2.47 7.47 87.38 0.65 3.13 16 24 C 0.23 6.54 8.05 136.30 1.10 7.64 16 25 N -0.48 -17.91 11.28 -189.67 -2.14 -20.05 16 26 C -0.07 -1.82 11.84 83.68 0.99 -0.83 16 27 C 0.02 0.28 12.03 83.18 1.00 1.28 16 28 N -0.54 -8.87 6.22 -187.53 -1.17 -10.04 16 29 H 0.44 3.13 8.96 -92.71 -0.83 2.30 16 30 N -0.43 -15.32 7.57 -179.26 -1.36 -16.68 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.22 6.09 -2.39 -0.01 2.20 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 2.40 7.93 -2.39 -0.02 2.39 16 35 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.37 21.28 7.76 -92.71 -0.72 20.57 16 37 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.05 2.25 7.63 -2.39 -0.02 2.23 16 39 H 0.05 2.36 7.39 -2.38 -0.02 2.35 16 40 H 0.22 3.77 8.01 -2.91 -0.02 3.75 16 41 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.24 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -84.40 368.64 -0.09 -84.49 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.46 Total: 32.38 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 8.29 Total: 22.18 kcal Atomic # 7 Polarization: -163.51 SS G_CDS: -8.58 Total: -172.09 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.04 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.31 Total: 3.44 kcal Total: -84.40 -0.09 -84.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989213379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.175 kcal (2) G-P(sol) polarization free energy of solvation -84.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds