Wall clock time and date at job start Wed Apr 1 2020 04:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47290 * 270.27710 * 3 2 1 5 5 H 1.48509 * 109.47073 * 30.27526 * 3 2 1 6 6 H 1.48498 * 109.47159 * 150.27384 * 3 2 1 7 7 C 1.38815 * 119.99465 * 180.27346 * 2 1 3 8 8 H 1.08001 * 120.00336 * 359.72412 * 7 2 1 9 9 N 1.36944 * 119.99697 * 179.72700 * 7 2 1 10 10 C 1.46496 * 119.99606 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50130 * 34.93587 * 10 9 7 12 12 C 1.53043 * 109.49655 * 154.99993 * 10 9 7 13 13 C 1.53041 * 109.53995 * 181.31615 * 12 10 9 14 14 C 1.53188 * 109.31293 * 298.63374 * 13 12 10 15 15 N 1.46929 * 108.77473 * 54.63438 * 14 13 12 16 16 C 1.34772 * 120.63065 * 126.41469 * 15 14 13 17 17 O 1.21617 * 120.00237 * 173.03135 * 16 15 14 18 18 C 1.47344 * 119.99890 * 353.03393 * 16 15 14 19 19 C 1.36308 * 122.54369 * 171.67263 * 18 16 15 20 20 S 1.71005 * 109.01839 * 179.97438 * 19 18 16 21 21 C 1.75975 * 90.63730 * 359.97438 * 20 19 18 22 22 C 1.47372 * 125.23520 * 179.97438 * 21 20 19 23 23 N 1.31607 * 125.85769 * 179.66929 * 22 21 20 24 24 C 1.33636 * 109.24738 * 179.87059 * 23 22 21 25 25 C 1.34995 * 108.41781 * 0.39144 * 24 23 22 26 26 N 1.36587 * 125.86199 * 359.97438 * 22 21 20 27 27 H 0.96997 * 126.50185 * 0.02562 * 26 22 21 28 28 N 1.29958 * 109.52861 * 359.75858 * 21 20 19 29 29 C 1.46924 * 118.73739 * 306.39253 * 15 14 13 30 30 H 0.97004 * 119.99585 * 359.72331 * 1 2 3 31 31 H 0.96992 * 119.99962 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.46111 * 301.33893 * 12 10 9 33 33 H 1.09007 * 109.46258 * 61.30771 * 12 10 9 34 34 H 1.09001 * 109.49752 * 58.58879 * 13 12 10 35 35 H 1.09001 * 109.49643 * 178.68508 * 13 12 10 36 36 H 1.08990 * 109.58607 * 174.42611 * 14 13 12 37 37 H 1.09000 * 109.58483 * 294.85071 * 14 13 12 38 38 H 1.07994 * 125.48980 * 359.97040 * 19 18 16 39 39 H 1.07998 * 125.78877 * 180.11946 * 24 23 22 40 40 H 1.08005 * 126.46889 * 179.72527 * 25 24 23 41 41 H 1.08997 * 109.58824 * 293.81799 * 29 15 14 42 42 H 1.09004 * 109.58417 * 173.39585 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4920 2.0497 -1.4000 5 1 1.4507 2.6510 0.7059 6 1 3.5507 1.4383 0.6942 7 6 2.0102 -1.2022 -0.0057 8 1 1.4702 -2.1375 -0.0057 9 7 3.3796 -1.2023 -0.0114 10 6 4.1120 -2.4710 -0.0180 11 1 3.5619 -3.2056 -0.6062 12 6 5.4972 -2.2580 -0.6328 13 6 6.2508 -3.5895 -0.6703 14 6 6.4312 -4.1099 0.7591 15 7 5.1141 -4.1800 1.4066 16 6 4.6903 -5.3243 1.9788 17 8 3.6571 -5.3370 2.6203 18 6 5.4786 -6.5598 1.8271 19 6 5.1921 -7.7014 2.5146 20 16 6.3174 -8.9125 2.0774 21 6 7.1203 -7.7972 0.9781 22 6 8.2946 -8.1193 0.1480 23 7 8.9006 -7.2973 -0.6822 24 6 9.9257 -7.9310 -1.2597 25 6 9.9660 -9.1952 -0.7879 26 7 8.9373 -9.3237 0.1038 27 1 8.7071 -10.1193 0.6086 28 7 6.5154 -6.6474 1.0075 29 6 4.2681 -2.9788 1.4188 30 1 -0.4850 0.8401 0.0041 31 1 3.8646 -0.3623 -0.0118 32 1 5.3891 -1.8732 -1.6470 33 1 6.0557 -1.5416 -0.0303 34 1 5.6809 -4.3139 -1.2521 35 1 7.2282 -3.4415 -1.1296 36 1 6.8786 -5.1034 0.7325 37 1 7.0766 -3.4310 1.3164 38 1 4.3845 -7.8217 3.2214 39 1 10.6039 -7.5053 -1.9844 40 1 10.6763 -9.9608 -1.0633 41 1 4.7372 -2.2077 2.0299 42 1 3.2883 -3.2261 1.8275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999759393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:02 Heat of formation + Delta-G solvation = 83.710252 kcal Electronic energy + Delta-G solvation = -27637.392510 eV Core-core repulsion = 23745.555112 eV Total energy + Delta-G solvation = -3891.837398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.94274 -41.91356 -40.02163 -38.73644 -36.32539 -34.01499 -33.61961 -32.93346 -32.75331 -30.63338 -29.98444 -27.62720 -26.26239 -25.58603 -24.01948 -23.13658 -22.71569 -21.86343 -21.17618 -20.33583 -19.74816 -19.47840 -18.98133 -17.51812 -17.26465 -16.71589 -16.67751 -16.26422 -16.09900 -15.78150 -15.47510 -15.15963 -15.08706 -15.01155 -14.86309 -14.54383 -14.30649 -14.20729 -13.97644 -13.86891 -13.38495 -13.14809 -12.98011 -12.54209 -12.24502 -12.09829 -11.93692 -11.85276 -11.43312 -11.38022 -11.28552 -11.12038 -11.09290 -11.04326 -10.46800 -10.15983 -9.83147 -9.30406 -9.07570 -8.05706 -5.42060 -0.93291 -0.14390 0.23613 0.38069 1.29979 1.36316 1.41424 1.48427 1.67745 1.97805 2.06545 2.32772 2.46276 2.91436 3.24616 3.34196 3.50930 3.74000 3.94124 3.95545 4.07698 4.13236 4.20875 4.32542 4.36294 4.41400 4.44168 4.62977 4.68402 4.72891 4.82477 5.00436 5.02376 5.11148 5.23684 5.33813 5.42989 5.66357 5.70892 5.75489 6.08934 6.17786 6.31792 6.42741 6.96527 7.01365 7.03019 7.74610 7.98134 9.16018 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.002678 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.540840 B =10451.161700 C =11662.589741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.239 4.239 8 H 0.045 0.955 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.030 0.970 12 C -0.121 4.121 13 C -0.108 4.108 14 C 0.055 3.945 15 N -0.586 5.586 16 C 0.575 3.425 17 O -0.580 6.580 18 C -0.001 4.001 19 C -0.215 4.215 20 S 0.311 5.689 21 C 0.097 3.903 22 C 0.226 3.774 23 N -0.471 5.471 24 C -0.055 4.055 25 C 0.011 3.989 26 N -0.543 5.543 27 H 0.438 0.562 28 N -0.418 5.418 29 C 0.104 3.896 30 H 0.259 0.741 31 H 0.371 0.629 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.168 0.832 37 H 0.066 0.934 38 H 0.204 0.796 39 H 0.194 0.806 40 H 0.235 0.765 41 H 0.068 0.932 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.293 -27.277 1.447 40.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.369 4.369 8 H 0.063 0.937 9 N -0.385 5.385 10 C 0.064 3.936 11 H 0.048 0.952 12 C -0.159 4.159 13 C -0.147 4.147 14 C -0.067 4.067 15 N -0.316 5.316 16 C 0.362 3.638 17 O -0.461 6.461 18 C -0.137 4.137 19 C -0.358 4.358 20 S 0.569 5.431 21 C -0.179 4.179 22 C -0.036 4.036 23 N -0.192 5.192 24 C -0.206 4.206 25 C -0.127 4.127 26 N -0.150 5.150 27 H 0.280 0.720 28 N -0.134 5.134 29 C -0.021 4.021 30 H 0.068 0.932 31 H 0.205 0.795 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.183 0.817 37 H 0.084 0.916 38 H 0.221 0.779 39 H 0.211 0.789 40 H 0.251 0.749 41 H 0.087 0.913 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 28.624 -27.148 1.588 39.483 hybrid contribution -1.167 1.269 0.535 1.805 sum 27.458 -25.879 2.123 37.791 Atomic orbital electron populations 1.69916 1.07340 1.26901 1.59194 1.25606 0.96228 1.01616 1.02040 0.85293 0.78615 0.78792 0.78351 1.19918 1.22087 1.17317 1.18966 0.82564 0.93264 1.42145 0.93653 1.42643 1.02432 1.03527 1.89936 1.20562 0.92986 0.87155 0.92917 0.95172 1.21831 0.93886 0.98834 1.01360 1.21669 1.01268 0.95235 0.96520 1.23409 0.82026 1.08779 0.92451 1.48112 1.19262 1.09810 1.54397 1.17717 0.84004 0.83019 0.79068 1.90788 1.26282 1.85815 1.43172 1.20106 0.97298 0.95926 1.00362 1.27172 1.06703 0.96406 1.05532 1.83051 1.17341 1.10491 1.32209 1.24499 0.98751 0.93075 1.01539 1.19266 0.96984 0.84742 1.02565 1.70424 1.08375 1.32262 1.08172 1.23040 0.99223 0.93051 1.05256 1.23741 0.93770 1.00941 0.94199 1.43339 1.24474 1.12196 1.34977 0.72010 1.66332 1.07012 1.21220 1.18841 1.22291 0.94129 0.85821 0.99878 0.93177 0.79522 0.91132 0.90709 0.93111 0.88071 0.81716 0.91589 0.77922 0.78886 0.74884 0.91345 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.16 13.97 21.65 0.30 -65.85 16 2 C -0.06 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.96 47.28 27.73 68.60 1.90 49.18 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.25 -10.96 6.52 99.48 0.65 -10.32 16 7 C -0.24 -14.65 10.41 84.03 0.88 -13.78 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.74 -37.35 4.93 -322.57 -1.59 -38.94 16 10 C 0.17 7.50 2.92 45.07 0.13 7.63 16 11 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 12 C -0.12 -3.99 5.35 30.62 0.16 -3.82 16 13 C -0.11 -3.11 6.08 30.67 0.19 -2.92 16 14 C 0.05 1.63 6.26 86.36 0.54 2.17 16 15 N -0.59 -21.56 2.97 -822.90 -2.45 -24.00 16 16 C 0.58 21.67 7.65 86.64 0.66 22.33 16 17 O -0.58 -25.99 16.15 -4.09 -0.07 -26.06 16 18 C 0.00 -0.02 6.50 41.00 0.27 0.25 16 19 C -0.21 -4.33 10.63 67.37 0.72 -3.61 16 20 S 0.31 3.28 23.17 -56.49 -1.31 1.97 16 21 C 0.10 1.78 7.47 87.38 0.65 2.43 16 22 C 0.23 3.67 8.05 136.30 1.10 4.76 16 23 N -0.47 -9.58 11.28 -189.67 -2.14 -11.72 16 24 C -0.05 -0.65 11.84 83.67 0.99 0.34 16 25 C 0.01 0.05 12.03 83.18 1.00 1.05 16 26 N -0.54 -3.45 6.22 -187.53 -1.17 -4.61 16 27 H 0.44 -0.42 8.96 -92.71 -0.83 -1.25 16 28 N -0.42 -10.64 6.68 -179.25 -1.20 -11.84 16 29 C 0.10 4.45 6.00 86.36 0.52 4.97 16 30 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 31 H 0.37 17.37 5.66 -92.71 -0.52 16.85 16 32 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.17 4.79 3.56 -79.91 -0.28 4.51 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.20 3.75 8.03 -2.91 -0.02 3.72 16 39 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.23 -1.31 8.06 -2.91 -0.02 -1.34 16 41 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.05 2.59 7.05 -2.38 -0.02 2.57 16 Total: -1.00 -90.21 363.22 -0.03 -90.25 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.60 Total: 23.31 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 8.27 Total: 18.33 kcal Atomic # 7 Polarization: -148.74 SS G_CDS: -8.24 Total: -156.98 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.07 Total: -26.06 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.90 Total: 49.18 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.31 Total: 1.97 kcal Total: -90.21 -0.03 -90.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999759393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.956 kcal (2) G-P(sol) polarization free energy of solvation -90.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds