Wall clock time and date at job start Wed Apr 1 2020 04:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99723 * 2 1 4 4 H 1.48500 * 109.47324 * 270.00005 * 3 2 1 5 5 H 1.48503 * 109.46864 * 30.00063 * 3 2 1 6 6 H 1.48501 * 109.46987 * 149.99692 * 3 2 1 7 7 C 1.38805 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99953 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00319 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00425 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.49416 * 324.92907 * 10 9 7 12 12 C 1.53036 * 109.52823 * 204.85404 * 10 9 7 13 13 C 1.53039 * 109.54281 * 178.66571 * 12 10 9 14 14 C 1.52755 * 109.38310 * 61.23508 * 13 12 10 15 15 N 1.46929 * 109.01122 * 305.59041 * 14 13 12 16 16 C 1.34770 * 120.62959 * 233.58071 * 15 14 13 17 17 O 1.21629 * 119.99468 * 180.53238 * 16 15 14 18 18 C 1.47334 * 120.00343 * 0.25673 * 16 15 14 19 19 C 1.36308 * 122.54434 * 171.88247 * 18 16 15 20 20 S 1.71008 * 109.02037 * 179.97438 * 19 18 16 21 21 C 1.75973 * 90.63526 * 0.02562 * 20 19 18 22 22 C 1.47378 * 125.23824 * 180.02562 * 21 20 19 23 23 N 1.31605 * 125.86004 * 179.97438 * 22 21 20 24 24 C 1.33638 * 109.24635 * 179.97438 * 23 22 21 25 25 C 1.34999 * 108.41825 * 0.02562 * 24 23 22 26 26 N 1.36588 * 125.85618 * 359.69211 * 22 21 20 27 27 H 0.96999 * 126.50823 * 0.03238 * 26 22 21 28 28 N 1.29963 * 109.52731 * 359.75551 * 21 20 19 29 29 C 1.46927 * 118.73495 * 53.31065 * 15 14 13 30 30 H 0.96998 * 120.00311 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99935 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46038 * 298.68872 * 12 10 9 33 33 H 1.09005 * 109.46135 * 58.64273 * 12 10 9 34 34 H 1.08994 * 109.49957 * 181.31717 * 13 12 10 35 35 H 1.09001 * 109.49274 * 301.38028 * 13 12 10 36 36 H 1.09003 * 109.50861 * 185.70655 * 14 13 12 37 37 H 1.09001 * 109.42889 * 65.42757 * 14 13 12 38 38 H 1.07994 * 125.49071 * 359.97438 * 19 18 16 39 39 H 1.07997 * 125.78982 * 179.97438 * 24 23 22 40 40 H 1.08004 * 126.46601 * 180.02562 * 25 24 23 41 41 H 1.09004 * 109.58799 * 66.43224 * 29 15 14 42 42 H 1.08993 * 109.58425 * 186.85306 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5656 -3.2064 0.5900 12 6 5.5012 -2.2593 0.6068 13 6 6.2545 -3.5911 0.6375 14 6 6.4236 -4.1109 -0.7889 15 7 5.1049 -4.1778 -1.4335 16 6 4.6768 -5.3212 -2.0042 17 8 3.5871 -5.3609 -2.5431 18 6 5.5313 -6.5212 -1.9807 19 6 5.0912 -7.7430 -2.3951 20 16 6.3568 -8.8797 -2.2210 21 6 7.4209 -7.6279 -1.5907 22 6 8.8181 -7.8325 -1.1688 23 7 9.6244 -6.9059 -0.6965 24 6 10.8112 -7.4542 -0.4195 25 6 10.7562 -8.7678 -0.7259 26 7 9.4965 -9.0177 -1.1959 27 1 9.1513 -9.8736 -1.4943 28 7 6.7868 -6.4938 -1.5598 29 6 4.2594 -2.9762 -1.4386 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3619 0.0004 32 1 6.0563 -1.5420 0.0023 33 1 5.3994 -1.8762 1.6222 34 1 7.2346 -3.4444 1.0911 35 1 5.6879 -4.3161 1.2219 36 1 6.8688 -5.1056 -0.7635 37 1 7.0694 -3.4334 -1.3475 38 1 4.1025 -7.9583 -2.7726 39 1 11.6692 -6.9344 -0.0194 40 1 11.5547 -9.4866 -0.6159 41 1 4.7251 -2.2043 -2.0513 42 1 3.2772 -3.2224 -1.8417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999759395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:05 Heat of formation + Delta-G solvation = 84.007799 kcal Electronic energy + Delta-G solvation = -27574.735907 eV Core-core repulsion = 23682.911412 eV Total energy + Delta-G solvation = -3891.824495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.94617 -41.92027 -40.03237 -38.73571 -36.33258 -34.01933 -33.62295 -32.96005 -32.75701 -30.64637 -29.98743 -27.63496 -26.27597 -25.57574 -24.01894 -23.14519 -22.71810 -21.88327 -21.16884 -20.34660 -19.74699 -19.46899 -18.99549 -17.45754 -17.20820 -16.94434 -16.61065 -16.20934 -16.18453 -15.69683 -15.52485 -15.17420 -15.09318 -14.92767 -14.86507 -14.54556 -14.30360 -14.21376 -14.02197 -13.87992 -13.42284 -13.15492 -12.98588 -12.59269 -12.22518 -12.07141 -11.94782 -11.84491 -11.42129 -11.41915 -11.28907 -11.12401 -11.10099 -11.04854 -10.46797 -10.10796 -9.86545 -9.30772 -9.07643 -8.05537 -5.41958 -0.93787 -0.14679 0.23227 0.38806 1.30330 1.36194 1.41144 1.48288 1.67722 1.95832 2.07552 2.32514 2.46228 2.90520 3.24684 3.33630 3.50215 3.73617 3.93237 3.95342 4.06892 4.12983 4.20027 4.32051 4.35790 4.41244 4.44221 4.62768 4.68789 4.72808 4.82717 5.00513 5.01186 5.07880 5.24182 5.32899 5.40320 5.66652 5.70599 5.75705 6.08382 6.17867 6.31500 6.42373 6.97026 7.00985 7.03088 7.74752 7.98033 9.16100 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.002617 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.598288 B =10694.792899 C =11915.411142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.246 1.246 7 C -0.238 4.238 8 H 0.046 0.954 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.031 0.969 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.056 3.944 15 N -0.584 5.584 16 C 0.575 3.425 17 O -0.581 6.581 18 C 0.001 3.999 19 C -0.216 4.216 20 S 0.313 5.687 21 C 0.097 3.903 22 C 0.226 3.774 23 N -0.471 5.471 24 C -0.055 4.055 25 C 0.011 3.989 26 N -0.543 5.543 27 H 0.438 0.562 28 N -0.418 5.418 29 C 0.103 3.897 30 H 0.259 0.741 31 H 0.370 0.630 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.169 0.831 37 H 0.066 0.934 38 H 0.203 0.797 39 H 0.195 0.805 40 H 0.235 0.765 41 H 0.068 0.932 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.904 -27.003 -2.653 40.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.170 1.170 7 C -0.369 4.369 8 H 0.064 0.936 9 N -0.386 5.386 10 C 0.064 3.936 11 H 0.050 0.950 12 C -0.159 4.159 13 C -0.155 4.155 14 C -0.065 4.065 15 N -0.314 5.314 16 C 0.361 3.639 17 O -0.462 6.462 18 C -0.136 4.136 19 C -0.359 4.359 20 S 0.570 5.430 21 C -0.179 4.179 22 C -0.035 4.035 23 N -0.193 5.193 24 C -0.205 4.205 25 C -0.126 4.126 26 N -0.150 5.150 27 H 0.280 0.720 28 N -0.134 5.134 29 C -0.023 4.023 30 H 0.068 0.932 31 H 0.205 0.795 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.184 0.816 37 H 0.085 0.915 38 H 0.220 0.780 39 H 0.211 0.789 40 H 0.251 0.749 41 H 0.087 0.913 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 29.260 -26.863 -2.826 39.822 hybrid contribution -1.265 1.244 -0.369 1.812 sum 27.995 -25.619 -3.195 38.082 Atomic orbital electron populations 1.69908 1.07321 1.26891 1.59209 1.25594 0.96219 1.01583 1.02079 0.85315 0.78790 0.78887 0.78203 1.20391 1.21917 1.17010 1.18962 0.82549 0.93280 1.42100 0.93573 1.42641 1.02447 1.03539 1.89947 1.20561 0.92939 0.87194 0.92902 0.95038 1.21813 0.93870 0.98788 1.01401 1.21727 1.01453 0.95559 0.96719 1.23368 0.81862 1.09029 0.92264 1.48137 1.19169 1.09831 1.54306 1.17718 0.84885 0.82715 0.78588 1.90797 1.23133 1.84627 1.47632 1.20087 0.90911 0.94839 1.07728 1.27163 1.08003 0.96132 1.04624 1.83052 0.98357 1.08197 1.53356 1.24517 0.95692 0.92781 1.04883 1.19259 0.90931 0.83745 1.09601 1.70420 1.03280 1.31573 1.14024 1.23042 0.96452 0.93415 1.07635 1.23746 0.87617 0.99539 1.01741 1.43343 1.11720 1.10511 1.49410 0.72002 1.66380 1.05741 1.24677 1.16632 1.22301 0.94266 0.85770 0.99953 0.93183 0.79547 0.90768 0.91150 0.87858 0.92843 0.81614 0.91546 0.78019 0.78853 0.74878 0.91344 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.04 13.97 21.65 0.30 -65.74 16 2 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.96 47.22 27.74 68.60 1.90 49.12 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.25 -10.74 6.52 99.48 0.65 -10.09 16 7 C -0.24 -14.58 10.41 84.03 0.87 -13.70 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 9 N -0.74 -37.25 4.93 -322.58 -1.59 -38.84 16 10 C 0.17 7.45 2.92 45.07 0.13 7.58 16 11 H 0.03 1.51 8.08 -2.38 -0.02 1.49 16 12 C -0.12 -3.94 5.36 30.62 0.16 -3.77 16 13 C -0.12 -3.24 6.06 30.53 0.19 -3.05 16 14 C 0.06 1.68 6.15 86.22 0.53 2.21 16 15 N -0.58 -21.52 2.98 -823.71 -2.45 -23.97 16 16 C 0.57 21.65 7.67 86.64 0.66 22.31 16 17 O -0.58 -26.17 16.12 -4.12 -0.07 -26.24 16 18 C 0.00 0.02 6.53 41.00 0.27 0.28 16 19 C -0.22 -4.39 10.63 67.37 0.72 -3.67 16 20 S 0.31 3.28 23.17 -56.49 -1.31 1.97 16 21 C 0.10 1.75 7.47 87.38 0.65 2.40 16 22 C 0.23 3.60 8.05 136.30 1.10 4.70 16 23 N -0.47 -9.42 11.28 -189.66 -2.14 -11.56 16 24 C -0.05 -0.63 11.84 83.67 0.99 0.36 16 25 C 0.01 0.05 12.03 83.18 1.00 1.05 16 26 N -0.54 -3.30 6.22 -187.52 -1.17 -4.47 16 27 H 0.44 -0.51 8.96 -92.71 -0.83 -1.35 16 28 N -0.42 -10.52 6.59 -179.26 -1.18 -11.70 16 29 C 0.10 4.37 6.02 86.36 0.52 4.89 16 30 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 31 H 0.37 17.33 5.66 -92.71 -0.52 16.81 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.17 4.83 3.61 -82.81 -0.30 4.53 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.20 3.81 8.03 -2.91 -0.02 3.79 16 39 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.23 -1.38 8.06 -2.91 -0.02 -1.41 16 41 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.05 2.65 7.01 -2.39 -0.02 2.63 16 Total: -1.00 -90.04 363.04 -0.05 -90.09 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.61 Total: 23.18 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 8.26 Total: 18.14 kcal Atomic # 7 Polarization: -148.04 SS G_CDS: -8.23 Total: -156.27 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.07 Total: -26.24 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.31 Total: 1.97 kcal Total: -90.04 -0.05 -90.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999759395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.096 kcal (2) G-P(sol) polarization free energy of solvation -90.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds