Wall clock time and date at job start Wed Apr 1 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00550 * 2 1 4 4 H 1.48497 * 109.47390 * 240.00113 * 3 2 1 5 5 H 1.48498 * 109.46874 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47277 * 119.99915 * 3 2 1 7 7 C 1.38814 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00407 * 163.07606 * 7 2 1 9 9 N 1.36937 * 119.99856 * 343.08008 * 7 2 1 10 10 C 1.46919 * 120.63079 * 331.84498 * 9 7 2 11 11 C 1.53196 * 108.77592 * 233.58808 * 10 9 7 12 12 C 1.53040 * 109.31368 * 305.36417 * 11 10 9 13 13 N 1.46498 * 109.46130 * 181.38262 * 12 11 10 14 14 C 1.34779 * 119.99575 * 155.24874 * 13 12 11 15 15 O 1.21611 * 120.00493 * 359.72543 * 14 13 12 16 16 C 1.47412 * 119.99931 * 179.72798 * 14 13 12 17 17 C 1.41363 * 126.40473 * 359.68855 * 16 14 13 18 18 N 1.30468 * 108.08404 * 179.81589 * 17 16 14 19 19 N 1.39932 * 108.91919 * 0.44886 * 18 17 16 20 20 C 1.39368 * 125.77914 * 179.73645 * 19 18 17 21 21 N 1.29571 * 124.94057 * 359.96490 * 20 19 18 22 22 C 1.31842 * 116.97363 * 179.97438 * 21 20 19 23 23 C 1.33573 * 114.55475 * 0.02562 * 22 21 20 24 24 S 1.70977 * 124.94007 * 179.66865 * 20 19 18 25 25 C 1.34647 * 108.44606 * 359.70630 * 19 18 17 26 26 C 1.53047 * 109.52721 * 61.36930 * 12 11 10 27 27 C 1.46930 * 120.62814 * 151.82338 * 9 7 2 28 28 H 0.97006 * 119.99529 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.59050 * 113.80598 * 10 9 7 30 30 H 1.08994 * 109.70794 * 353.44345 * 10 9 7 31 31 H 1.09001 * 109.49936 * 185.41690 * 11 10 9 32 32 H 1.08998 * 109.49668 * 65.31611 * 11 10 9 33 33 H 1.08998 * 109.45900 * 301.36066 * 12 11 10 34 34 H 0.96990 * 120.00425 * 334.98023 * 13 12 11 35 35 H 1.07994 * 125.95652 * 0.02562 * 17 16 14 36 36 H 1.08005 * 122.72225 * 180.02562 * 22 21 20 37 37 H 1.08007 * 125.98464 * 179.97438 * 23 22 21 38 38 H 1.08002 * 126.32119 * 179.97438 * 25 19 18 39 39 H 1.09000 * 109.49437 * 58.58066 * 26 12 11 40 40 H 1.08993 * 109.49695 * 178.67810 * 26 12 11 41 41 H 1.08997 * 109.58753 * 246.19493 * 27 9 7 42 42 H 1.08993 * 109.58798 * 6.48173 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3698 -2.3625 0.3441 10 6 0.2258 -2.3409 1.2657 11 6 0.4970 -3.3211 2.4114 12 6 0.8115 -4.7023 1.8322 13 7 1.0390 -5.6500 2.9259 14 6 0.8403 -6.9682 2.7276 15 8 0.4674 -7.3705 1.6422 16 6 1.0750 -7.9225 3.8263 17 6 1.5127 -7.6065 5.1329 18 7 1.5964 -8.7175 5.8117 19 7 1.2320 -9.7843 4.9827 20 6 1.2025 -11.1284 5.3499 21 7 1.5120 -11.5843 6.5226 22 6 1.4278 -12.8882 6.6987 23 6 1.0278 -13.5691 5.6215 24 16 0.7456 -12.4149 4.3206 25 6 0.9142 -9.2924 3.7702 26 6 2.0671 -4.6180 0.9612 27 6 1.8136 -3.6528 -0.2011 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6773 -2.6411 0.7343 30 1 0.0964 -1.3361 1.6675 31 1 -0.3836 -3.3865 3.0503 32 1 1.3467 -2.9701 2.9969 33 1 -0.0285 -5.0418 1.2263 34 1 1.3363 -5.3292 3.7916 35 1 1.7353 -6.6175 5.5052 36 1 1.6633 -13.3669 7.6378 37 1 0.8963 -14.6394 5.5599 38 1 0.5932 -9.8641 2.9120 39 1 2.9019 -4.2546 1.5606 40 1 2.3041 -5.6065 0.5679 41 1 1.0400 -4.0598 -0.8522 42 1 2.7330 -3.5125 -0.7695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003941312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:42 Heat of formation + Delta-G solvation = 125.250624 kcal Electronic energy + Delta-G solvation = -26700.781831 eV Core-core repulsion = 22810.745759 eV Total energy + Delta-G solvation = -3890.036072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.08697 -40.17538 -39.35803 -37.24851 -34.48298 -33.96510 -32.13697 -30.98309 -30.27917 -29.88803 -29.17288 -26.17080 -25.08542 -23.46086 -22.81618 -22.23234 -21.60240 -20.82800 -19.77344 -19.37519 -19.16236 -17.74308 -16.85755 -16.45008 -16.24335 -15.89236 -15.62705 -15.10154 -14.89919 -14.74562 -14.14422 -14.10839 -13.91739 -13.66092 -13.51342 -13.33535 -12.95440 -12.60153 -12.35091 -12.19248 -11.57628 -11.44852 -11.10818 -11.04246 -10.85146 -10.70844 -10.49270 -10.41064 -10.27874 -10.06700 -10.03535 -9.93150 -9.72116 -9.66364 -9.50529 -8.90481 -8.65982 -8.44376 -6.67518 -5.78837 -3.20947 -0.29199 0.12151 0.92678 1.19148 1.65966 1.80133 2.34066 3.31889 3.38158 3.39528 3.44953 3.46067 3.57818 4.22142 4.40497 4.50348 4.57925 4.71168 4.77604 4.84197 5.22373 5.34780 5.35557 5.45638 5.51820 5.60110 5.85301 5.90041 6.08981 6.12596 6.27544 6.33956 6.54229 6.57303 6.60290 6.80942 6.81418 6.91347 7.00779 7.16406 7.32533 7.60081 7.71636 7.80506 8.35835 8.45546 9.21643 9.84848 10.41865 11.30077 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.037798 B = 0.001795 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.594333 B =15595.192164 C =15904.445491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.153 3.847 13 N -0.715 5.715 14 C 0.590 3.410 15 O -0.544 6.544 16 C -0.253 4.253 17 C 0.091 3.909 18 N -0.257 5.257 19 N -0.296 5.296 20 C 0.266 3.734 21 N -0.471 5.471 22 C 0.065 3.935 23 C -0.262 4.262 24 S 0.184 5.816 25 C 0.120 3.880 26 C -0.139 4.139 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.395 0.605 35 H 0.204 0.796 36 H 0.189 0.811 37 H 0.190 0.810 38 H 0.196 0.804 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 -26.360 12.560 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.050 3.950 13 N -0.365 5.365 14 C 0.376 3.624 15 O -0.422 6.422 16 C -0.268 4.268 17 C -0.100 4.100 18 N -0.074 5.074 19 N -0.073 5.073 20 C -0.099 4.099 21 N -0.189 5.189 22 C -0.087 4.087 23 C -0.402 4.402 24 S 0.433 5.567 25 C -0.026 4.026 26 C -0.180 4.180 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.220 0.780 36 H 0.206 0.794 37 H 0.207 0.793 38 H 0.213 0.787 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.674 -26.773 12.282 29.464 hybrid contribution 0.636 0.944 0.635 1.303 sum 1.310 -25.830 12.916 28.909 Atomic orbital electron populations 1.70014 1.05238 1.25633 1.53880 1.25048 0.95291 0.98414 1.00891 0.86366 0.78903 0.83357 0.78122 1.20902 1.21662 1.21058 1.19146 0.92558 0.84761 1.41740 0.91706 1.44079 1.35803 1.01665 1.49969 1.20738 0.88916 0.97904 0.87680 1.22548 1.00623 0.94654 1.00878 1.21078 0.98623 0.88072 0.87260 1.46115 1.68452 1.05954 1.15931 1.17066 0.77326 0.81959 0.86068 1.90797 1.47348 1.78515 1.25571 1.20550 1.16458 0.93093 0.96713 1.24526 0.95803 0.98297 0.91399 1.77620 1.20945 0.92660 1.16131 1.44658 1.50965 1.02561 1.09132 1.23055 1.04718 0.87590 0.94524 1.66134 1.19034 1.14935 1.18784 1.21663 1.00204 0.86280 1.00516 1.27230 1.12240 1.05201 0.95575 1.84278 1.62569 0.95550 1.14265 1.23062 0.96709 0.94663 0.88130 1.22387 0.97126 0.99590 0.98875 1.20875 0.97916 0.86524 0.92639 0.93554 0.96080 0.89029 0.92638 0.92097 0.89826 0.77101 0.77972 0.79450 0.79283 0.78696 0.92265 0.92652 0.96160 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 11.19 55.49 0.62 -25.21 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.57 2.99 -172.32 -0.52 -15.08 16 10 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 11 C -0.15 -2.60 5.55 -26.61 -0.15 -2.74 16 12 C 0.15 2.56 2.41 -67.89 -0.16 2.39 16 13 N -0.72 -9.56 5.07 -54.84 -0.28 -9.84 16 14 C 0.59 8.37 7.78 -12.52 -0.10 8.27 16 15 O -0.54 -9.60 16.56 5.27 0.09 -9.51 16 16 C -0.25 -2.95 6.13 -105.04 -0.64 -3.59 16 17 C 0.09 0.94 11.50 -16.94 -0.19 0.74 16 18 N -0.26 -3.20 12.44 30.88 0.38 -2.82 16 19 N -0.30 -3.40 3.74 -13.35 -0.05 -3.45 16 20 C 0.27 2.73 8.14 -87.03 -0.71 2.02 16 21 N -0.47 -5.04 10.57 -15.04 -0.16 -5.20 16 22 C 0.07 0.43 11.34 -19.18 -0.22 0.22 16 23 C -0.26 -1.24 11.35 29.10 0.33 -0.91 16 24 S 0.18 1.15 22.56 -107.50 -2.42 -1.27 16 25 C 0.12 1.28 10.83 -16.39 -0.18 1.10 16 26 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 27 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 2.35 6.07 -51.93 -0.31 2.03 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 34 H 0.40 4.10 7.55 -40.82 -0.31 3.79 16 35 H 0.20 1.34 7.50 -52.49 -0.39 0.94 16 36 H 0.19 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.19 0.26 8.06 -52.48 -0.42 -0.16 16 38 H 0.20 1.63 7.91 -52.49 -0.42 1.21 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -34.73 368.73 -9.42 -44.15 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.17 Total: 1.35 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.44 Total: 4.96 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.00 Total: -61.61 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.42 Total: -1.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.73 -9.42 -44.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003941312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.398 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds