Wall clock time and date at job start Wed Apr 1 2020 04:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00550 * 2 1 4 4 H 1.48497 * 109.47390 * 240.00113 * 3 2 1 5 5 H 1.48498 * 109.46874 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47277 * 119.99915 * 3 2 1 7 7 C 1.38814 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00407 * 163.07606 * 7 2 1 9 9 N 1.36937 * 119.99856 * 343.08008 * 7 2 1 10 10 C 1.46919 * 120.63079 * 331.84498 * 9 7 2 11 11 C 1.53196 * 108.77592 * 233.58808 * 10 9 7 12 12 C 1.53040 * 109.31368 * 305.36417 * 11 10 9 13 13 N 1.46498 * 109.46130 * 181.38262 * 12 11 10 14 14 C 1.34779 * 119.99575 * 155.24874 * 13 12 11 15 15 O 1.21611 * 120.00493 * 359.72543 * 14 13 12 16 16 C 1.47412 * 119.99931 * 179.72798 * 14 13 12 17 17 C 1.41363 * 126.40473 * 359.68855 * 16 14 13 18 18 N 1.30468 * 108.08404 * 179.81589 * 17 16 14 19 19 N 1.39932 * 108.91919 * 0.44886 * 18 17 16 20 20 C 1.39368 * 125.77914 * 179.73645 * 19 18 17 21 21 N 1.29571 * 124.94057 * 359.96490 * 20 19 18 22 22 C 1.31842 * 116.97363 * 179.97438 * 21 20 19 23 23 C 1.33573 * 114.55475 * 0.02562 * 22 21 20 24 24 S 1.70977 * 124.94007 * 179.66865 * 20 19 18 25 25 C 1.34647 * 108.44606 * 359.70630 * 19 18 17 26 26 C 1.53047 * 109.52721 * 61.36930 * 12 11 10 27 27 C 1.46930 * 120.62814 * 151.82338 * 9 7 2 28 28 H 0.97006 * 119.99529 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.59050 * 113.80598 * 10 9 7 30 30 H 1.08994 * 109.70794 * 353.44345 * 10 9 7 31 31 H 1.09001 * 109.49936 * 185.41690 * 11 10 9 32 32 H 1.08998 * 109.49668 * 65.31611 * 11 10 9 33 33 H 1.08998 * 109.45900 * 301.36066 * 12 11 10 34 34 H 0.96990 * 120.00425 * 334.98023 * 13 12 11 35 35 H 1.07994 * 125.95652 * 0.02562 * 17 16 14 36 36 H 1.08005 * 122.72225 * 180.02562 * 22 21 20 37 37 H 1.08007 * 125.98464 * 179.97438 * 23 22 21 38 38 H 1.08002 * 126.32119 * 179.97438 * 25 19 18 39 39 H 1.09000 * 109.49437 * 58.58066 * 26 12 11 40 40 H 1.08993 * 109.49695 * 178.67810 * 26 12 11 41 41 H 1.08997 * 109.58753 * 246.19493 * 27 9 7 42 42 H 1.08993 * 109.58798 * 6.48173 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3698 -2.3625 0.3441 10 6 0.2258 -2.3409 1.2657 11 6 0.4970 -3.3211 2.4114 12 6 0.8115 -4.7023 1.8322 13 7 1.0390 -5.6500 2.9259 14 6 0.8403 -6.9682 2.7276 15 8 0.4674 -7.3705 1.6422 16 6 1.0750 -7.9225 3.8263 17 6 1.5127 -7.6065 5.1329 18 7 1.5964 -8.7175 5.8117 19 7 1.2320 -9.7843 4.9827 20 6 1.2025 -11.1284 5.3499 21 7 1.5120 -11.5843 6.5226 22 6 1.4278 -12.8882 6.6987 23 6 1.0278 -13.5691 5.6215 24 16 0.7456 -12.4149 4.3206 25 6 0.9142 -9.2924 3.7702 26 6 2.0671 -4.6180 0.9612 27 6 1.8136 -3.6528 -0.2011 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6773 -2.6411 0.7343 30 1 0.0964 -1.3361 1.6675 31 1 -0.3836 -3.3865 3.0503 32 1 1.3467 -2.9701 2.9969 33 1 -0.0285 -5.0418 1.2263 34 1 1.3363 -5.3292 3.7916 35 1 1.7353 -6.6175 5.5052 36 1 1.6633 -13.3669 7.6378 37 1 0.8963 -14.6394 5.5599 38 1 0.5932 -9.8641 2.9120 39 1 2.9019 -4.2546 1.5606 40 1 2.3041 -5.6065 0.5679 41 1 1.0400 -4.0598 -0.8522 42 1 2.7330 -3.5125 -0.7695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003941312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:40 Heat of formation + Delta-G solvation = 102.021154 kcal Electronic energy + Delta-G solvation = -26701.789137 eV Core-core repulsion = 22810.745759 eV Total energy + Delta-G solvation = -3891.043378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.87828 -40.88221 -40.46364 -38.80853 -35.97738 -34.78430 -33.82306 -32.01498 -31.64589 -31.16432 -30.31470 -27.21584 -26.47368 -24.67458 -23.84653 -23.52884 -22.99731 -21.71110 -21.04949 -20.42356 -19.96966 -18.90440 -18.30120 -17.22929 -17.18536 -17.12128 -16.71292 -16.27926 -15.91241 -15.72000 -15.59768 -15.31370 -15.06002 -14.92232 -14.64772 -14.47602 -14.20108 -14.16660 -13.93622 -13.17640 -12.96857 -12.63677 -12.56974 -12.52792 -12.41365 -12.16343 -12.00663 -11.83030 -11.73560 -11.52288 -11.31272 -11.05084 -10.90095 -10.63809 -10.52047 -10.42441 -9.97916 -9.46806 -8.67095 -7.84993 -5.30235 -0.89378 -0.41485 0.45092 0.45323 0.98599 0.99837 1.50811 1.52334 1.59474 1.76475 2.23142 2.34768 2.54459 2.91662 3.30904 3.49229 3.69270 3.75508 3.86202 3.95912 4.00151 4.10591 4.32695 4.38709 4.39277 4.46257 4.52257 4.70170 4.86024 4.91378 4.92294 5.07858 5.11005 5.14651 5.20736 5.35263 5.41183 5.51912 5.58106 5.67894 5.75961 6.10394 6.41981 6.57290 6.64040 7.17759 7.27926 7.87766 8.40306 9.21811 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.037798 B = 0.001795 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.594333 B =15595.192164 C =15904.445491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.129 4.129 12 C 0.165 3.835 13 N -0.703 5.703 14 C 0.596 3.404 15 O -0.583 6.583 16 C -0.272 4.272 17 C 0.103 3.897 18 N -0.295 5.295 19 N -0.298 5.298 20 C 0.216 3.784 21 N -0.504 5.504 22 C 0.040 3.960 23 C -0.234 4.234 24 S 0.225 5.775 25 C 0.129 3.871 26 C -0.125 4.125 27 C 0.144 3.856 28 H 0.250 0.750 29 H -0.005 1.005 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.413 0.587 35 H 0.235 0.765 36 H 0.212 0.788 37 H 0.229 0.771 38 H 0.213 0.787 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.008 0.992 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -28.506 13.908 31.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.169 4.169 12 C 0.060 3.940 13 N -0.353 5.353 14 C 0.384 3.616 15 O -0.464 6.464 16 C -0.287 4.287 17 C -0.087 4.087 18 N -0.112 5.112 19 N -0.074 5.074 20 C -0.147 4.147 21 N -0.223 5.223 22 C -0.110 4.110 23 C -0.373 4.373 24 S 0.474 5.526 25 C -0.018 4.018 26 C -0.165 4.165 27 C 0.018 3.982 28 H 0.059 0.941 29 H 0.013 0.987 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.251 0.749 36 H 0.229 0.771 37 H 0.246 0.754 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.633 -28.952 13.684 32.064 hybrid contribution 0.313 1.366 0.183 1.414 sum 1.946 -27.585 13.867 30.936 Atomic orbital electron populations 1.70176 1.06643 1.25950 1.55320 1.25800 0.96033 1.01475 1.01200 0.85338 0.77530 0.79195 0.78337 1.20379 1.22157 1.20176 1.19476 0.92850 0.85866 1.41110 0.91540 1.44337 1.35933 1.02190 1.50763 1.20570 0.87725 0.97768 0.88807 1.22267 1.02116 0.93587 0.98916 1.20665 0.97321 0.88162 0.87809 1.45775 1.68341 1.05337 1.15851 1.17286 0.76207 0.82109 0.86034 1.90779 1.49181 1.79112 1.27309 1.20270 1.18819 0.92984 0.96596 1.24978 0.94223 0.99095 0.90423 1.77557 1.22580 0.93492 1.17567 1.44755 1.50500 1.03171 1.09013 1.23386 1.07616 0.87719 0.95939 1.66096 1.19302 1.17113 1.19820 1.22082 1.01386 0.85262 1.02270 1.27783 1.08783 1.06688 0.94059 1.84136 1.60904 0.94010 1.13562 1.23359 0.95343 0.94712 0.88396 1.22186 0.97805 0.98729 0.97749 1.20971 0.97363 0.85938 0.93927 0.94062 0.98701 0.91922 0.90355 0.90968 0.92028 0.74962 0.74921 0.77132 0.75425 0.77005 0.91431 0.91995 0.97385 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 11.19 21.65 0.24 -54.60 16 2 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 3 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.26 -14.32 9.58 84.03 0.81 -13.52 16 8 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 9 N -0.61 -30.35 2.99 -699.11 -2.09 -32.44 16 10 C 0.18 8.34 5.30 86.37 0.46 8.80 16 11 C -0.13 -4.43 5.55 30.67 0.17 -4.26 16 12 C 0.16 5.37 2.41 45.02 0.11 5.48 16 13 N -0.70 -17.53 5.07 -445.67 -2.26 -19.79 16 14 C 0.60 16.23 7.78 86.66 0.67 16.91 16 15 O -0.58 -20.33 16.56 -4.07 -0.07 -20.40 16 16 C -0.27 -6.01 6.13 -20.14 -0.12 -6.13 16 17 C 0.10 1.98 11.50 85.66 0.99 2.96 16 18 N -0.29 -7.17 12.44 -56.22 -0.70 -7.87 16 19 N -0.30 -6.68 3.74 -196.16 -0.73 -7.41 16 20 C 0.22 4.24 8.14 179.09 1.46 5.70 16 21 N -0.50 -10.40 10.57 -201.49 -2.13 -12.53 16 22 C 0.04 0.46 11.34 83.63 0.95 1.41 16 23 C -0.23 -1.45 11.35 66.76 0.76 -0.70 16 24 S 0.23 2.33 22.56 -56.49 -1.27 1.05 16 25 C 0.13 2.64 10.83 84.22 0.91 3.56 16 26 C -0.12 -4.31 5.65 30.68 0.17 -4.14 16 27 C 0.14 6.14 6.52 86.36 0.56 6.71 16 28 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 29 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 34 H 0.41 7.43 7.55 -92.72 -0.70 6.73 16 35 H 0.23 2.50 7.50 -2.91 -0.02 2.47 16 36 H 0.21 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.23 -0.49 8.06 -2.91 -0.02 -0.52 16 38 H 0.21 3.32 7.91 -2.91 -0.02 3.30 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 42 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 Total: -1.00 -77.96 368.73 1.69 -76.27 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.37 Total: 10.89 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 8.31 Total: 20.45 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -7.67 Total: -134.64 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.07 Total: -20.40 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.27 Total: 1.05 kcal Total: -77.96 1.69 -76.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003941312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.288 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds