Wall clock time and date at job start Wed Apr 1 2020 04:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99725 * 2 1 4 4 H 1.48498 * 109.47131 * 269.99964 * 3 2 1 5 5 H 1.48493 * 109.47342 * 30.00177 * 3 2 1 6 6 H 1.48508 * 109.46944 * 150.00028 * 3 2 1 7 7 C 1.38806 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00270 * 197.35224 * 7 2 1 9 9 N 1.36935 * 120.00126 * 17.35643 * 7 2 1 10 10 C 1.46927 * 120.63235 * 27.67752 * 9 7 2 11 11 C 1.53187 * 108.77749 * 126.41205 * 10 9 7 12 12 C 1.53045 * 109.31386 * 54.63504 * 11 10 9 13 13 C 1.53040 * 109.53552 * 298.63585 * 12 11 10 14 14 H 1.08994 * 109.49562 * 301.41031 * 13 12 11 15 15 N 1.46506 * 109.49343 * 181.34966 * 13 12 11 16 16 C 1.34775 * 119.99977 * 155.06634 * 15 13 12 17 17 O 1.21628 * 119.99815 * 359.97438 * 16 15 13 18 18 C 1.47340 * 120.00045 * 180.02562 * 16 15 13 19 19 C 1.36300 * 122.54185 * 179.97438 * 18 16 15 20 20 S 1.71012 * 109.01745 * 179.97438 * 19 18 16 21 21 C 1.75968 * 90.63496 * 0.02562 * 20 19 18 22 22 C 1.47383 * 125.23639 * 179.97438 * 21 20 19 23 23 N 1.31607 * 125.85890 * 180.02562 * 22 21 20 24 24 C 1.33635 * 109.24534 * 180.02562 * 23 22 21 25 25 C 1.35000 * 108.41842 * 0.02562 * 24 23 22 26 26 N 1.36590 * 125.85618 * 359.74844 * 22 21 20 27 27 H 0.96993 * 126.50301 * 359.96107 * 26 22 21 28 28 N 1.29959 * 109.52893 * 359.75706 * 21 20 19 29 29 C 1.46930 * 120.63240 * 207.69575 * 9 7 2 30 30 H 0.97002 * 120.00256 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.58135 * 6.61868 * 10 9 7 32 32 H 1.08998 * 109.69885 * 246.27425 * 10 9 7 33 33 H 1.08997 * 109.49762 * 294.67987 * 11 10 9 34 34 H 1.09006 * 109.52118 * 174.60400 * 11 10 9 35 35 H 1.08996 * 109.45744 * 178.60842 * 12 11 10 36 36 H 1.08998 * 109.45618 * 58.65445 * 12 11 10 37 37 H 0.96996 * 120.00000 * 335.06268 * 15 13 12 38 38 H 1.07997 * 125.49513 * 0.02562 * 19 18 16 39 39 H 1.07992 * 125.79081 * 180.02562 * 24 23 22 40 40 H 1.08001 * 126.46808 * 180.02562 * 25 24 23 41 41 H 1.09001 * 109.58504 * 113.79630 * 29 9 7 42 42 H 1.09000 * 109.58773 * 353.37596 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3723 -2.3608 -0.3548 10 6 0.2278 -2.3339 -1.2757 11 6 0.5006 -3.3035 -2.4299 12 6 0.8185 -4.6890 -1.8626 13 6 2.0742 -4.6095 -0.9914 14 1 2.9079 -4.2393 -1.5879 15 7 2.3961 -5.9422 -0.4750 16 6 3.6629 -6.2418 -0.1260 17 8 4.5390 -5.4058 -0.2401 18 6 3.9868 -7.5822 0.3928 19 6 5.2493 -7.9408 0.7605 20 16 5.2313 -9.5606 1.3085 21 6 3.5009 -9.6642 1.0063 22 6 2.6652 -10.8540 1.2478 23 7 1.3712 -10.9451 1.0259 24 6 0.9520 -12.1690 1.3610 25 6 2.0117 -12.8750 1.8094 26 7 3.1019 -12.0528 1.7353 27 1 4.0121 -12.2774 1.9842 28 7 3.0723 -8.5287 0.5417 29 6 1.8192 -3.6547 0.1790 30 1 -0.4850 0.8400 0.0004 31 1 0.0985 -1.3254 -1.6684 32 1 -0.6757 -2.6390 -0.7479 33 1 1.3491 -2.9456 -3.0128 34 1 -0.3800 -3.3655 -3.0694 35 1 0.9887 -5.3867 -2.6825 36 1 -0.0207 -5.0356 -1.2595 37 1 1.6975 -6.6090 -0.3843 38 1 6.1205 -7.3042 0.7142 39 1 -0.0624 -12.5317 1.2859 40 1 2.0015 -13.8979 2.1557 41 1 1.0468 -4.0690 0.8270 42 1 2.7399 -3.5178 0.7461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008008451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:02 Heat of formation + Delta-G solvation = 95.839426 kcal Electronic energy + Delta-G solvation = -27037.968223 eV Core-core repulsion = 23146.656786 eV Total energy + Delta-G solvation = -3891.311438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41707 -40.50429 -38.78293 -37.17055 -34.26920 -33.08431 -32.37495 -31.95906 -30.39406 -29.29189 -28.81509 -26.07901 -25.21277 -23.87842 -22.22505 -22.05602 -21.65568 -20.77476 -19.70177 -19.41352 -19.07160 -18.02722 -16.83574 -16.56737 -15.91959 -15.73646 -15.23884 -15.08449 -14.67688 -14.61829 -14.24234 -14.12687 -13.84740 -13.69044 -13.51878 -13.27791 -13.01240 -12.48610 -12.31338 -12.25814 -11.74027 -11.04254 -10.83364 -10.76106 -10.68133 -10.52262 -10.35985 -10.31063 -10.18642 -10.14812 -10.06477 -9.84269 -9.71735 -9.57407 -9.54791 -8.77067 -8.50487 -8.33120 -6.60952 -5.71976 -3.13949 -0.15537 0.58175 1.05595 1.27184 1.99494 2.21641 2.81676 3.34224 3.43756 3.44647 3.50731 3.53247 3.65474 4.17509 4.52535 4.57883 4.81880 4.89229 4.92586 4.98491 5.34934 5.39587 5.45686 5.57163 5.63910 5.69801 5.83003 6.15537 6.17717 6.23266 6.34741 6.60208 6.61950 6.68454 6.73358 6.77245 6.91359 7.01123 7.10126 7.43510 7.53586 7.72204 7.81775 7.89109 8.39685 8.52848 9.28563 9.90964 10.47062 11.36713 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.002314 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.411879 B =12099.357307 C =12970.148180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.088 0.912 15 N -0.699 5.699 16 C 0.588 3.412 17 O -0.529 6.529 18 C 0.024 3.976 19 C -0.202 4.202 20 S 0.176 5.824 21 C 0.115 3.885 22 C 0.261 3.739 23 N -0.428 5.428 24 C -0.022 4.022 25 C -0.027 4.027 26 N -0.560 5.560 27 H 0.422 0.578 28 N -0.394 5.394 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.089 0.911 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.406 0.594 38 H 0.199 0.801 39 H 0.180 0.820 40 H 0.188 0.812 41 H 0.019 0.981 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 -29.774 2.558 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.178 4.178 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.106 0.894 15 N -0.349 5.349 16 C 0.369 3.631 17 O -0.406 6.406 18 C -0.113 4.113 19 C -0.344 4.344 20 S 0.431 5.569 21 C -0.163 4.163 22 C -0.001 4.001 23 N -0.149 5.149 24 C -0.174 4.174 25 C -0.164 4.164 26 N -0.165 5.165 27 H 0.260 0.740 28 N -0.110 5.110 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.242 0.758 38 H 0.216 0.784 39 H 0.197 0.803 40 H 0.205 0.795 41 H 0.037 0.963 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.740 -28.932 2.413 30.047 hybrid contribution 0.792 0.487 0.243 0.961 sum 8.531 -28.445 2.656 29.815 Atomic orbital electron populations 1.70043 1.05213 1.25423 1.54179 1.25022 0.95304 0.98369 1.01035 0.86266 0.79144 0.83574 0.77696 1.21432 1.21828 1.20406 1.19238 0.92808 0.84692 1.41066 0.91532 1.44006 1.35604 1.01001 1.50416 1.20848 0.88594 0.98572 0.87899 1.22175 1.00439 0.95132 1.00091 1.21679 0.96746 0.98572 0.98335 1.21831 0.98022 0.80866 0.97295 0.89429 1.45999 1.08882 1.16070 1.63930 1.16999 0.83563 0.84273 0.78229 1.90855 1.47290 1.47938 1.54509 1.20704 0.88414 0.96175 1.06056 1.26906 1.03159 0.99987 1.04381 1.83557 1.07024 1.07746 1.58533 1.23866 0.92870 0.93644 1.05885 1.19455 0.89949 0.84861 1.05839 1.70556 1.06610 1.19999 1.17733 1.22587 1.00008 0.90257 1.04508 1.23004 0.86559 0.98341 1.08458 1.43356 1.11550 1.11163 1.50441 0.73995 1.66769 1.33739 0.98500 1.11946 1.21185 0.98022 0.86779 0.92564 0.93694 0.89254 0.96238 0.92441 0.92658 0.92970 0.92023 0.75840 0.78416 0.80280 0.79517 0.96284 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 11.19 55.49 0.62 -26.24 16 2 C 0.00 0.03 4.91 -17.44 -0.09 -0.06 16 3 Si 0.90 22.49 29.59 -169.99 -5.03 17.46 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.15 9.58 -15.06 -0.14 -7.30 16 8 H 0.07 1.93 7.89 -52.48 -0.41 1.51 16 9 N -0.59 -15.46 3.00 -172.33 -0.52 -15.98 16 10 C 0.17 4.07 5.31 -3.71 -0.02 4.05 16 11 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 12 C -0.12 -2.02 5.35 -26.69 -0.14 -2.16 16 13 C 0.12 2.42 2.60 -67.81 -0.18 2.24 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 15 N -0.70 -11.79 5.08 -54.79 -0.28 -12.07 16 16 C 0.59 10.10 7.76 -12.56 -0.10 10.01 16 17 O -0.53 -10.69 16.34 5.25 0.09 -10.60 16 18 C 0.02 0.33 6.68 -84.60 -0.56 -0.23 16 19 C -0.20 -2.18 10.63 30.03 0.32 -1.86 16 20 S 0.18 1.29 23.17 -107.50 -2.49 -1.20 16 21 C 0.12 1.26 7.47 -14.62 -0.11 1.15 16 22 C 0.26 2.65 8.05 -154.61 -1.25 1.41 16 23 N -0.43 -5.15 11.28 -11.30 -0.13 -5.27 16 24 C -0.02 -0.18 11.84 -17.92 -0.21 -0.39 16 25 C -0.03 -0.14 12.03 -16.51 -0.20 -0.33 16 26 N -0.56 -3.25 6.22 -10.62 -0.07 -3.31 16 27 H 0.42 1.04 8.96 -40.82 -0.37 0.67 16 28 N -0.39 -5.38 10.07 -8.01 -0.08 -5.46 16 29 C 0.14 3.27 6.09 -3.71 -0.02 3.25 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.41 6.23 8.09 -40.82 -0.33 5.90 16 38 H 0.20 1.90 8.01 -52.49 -0.42 1.48 16 39 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.19 0.16 8.06 -52.49 -0.42 -0.27 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -36.17 369.41 -10.34 -46.52 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.17 Total: 3.69 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -2.86 Total: 6.89 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -0.45 Total: -68.33 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.49 Total: -1.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.17 -10.34 -46.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008008451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.357 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds