Wall clock time and date at job start Wed Apr 1 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.78232 * 2 1 4 4 C 1.54330 * 110.71998 * 123.23606 * 2 1 3 5 5 N 1.47022 * 107.27195 * 140.55804 * 4 2 1 6 6 C 1.34777 * 125.64518 * 181.09871 * 5 4 2 7 7 O 1.21673 * 119.99935 * 174.94532 * 6 5 4 8 8 C 1.46882 * 120.00240 * 354.94412 * 6 5 4 9 9 N 1.38198 * 125.32227 * 5.24929 * 8 6 5 10 10 H 0.97004 * 125.11820 * 359.97438 * 9 8 6 11 11 C 1.37406 * 109.76467 * 179.88130 * 9 8 6 12 12 C 1.39280 * 133.14752 * 180.10473 * 11 9 8 13 13 C 1.37665 * 119.81839 * 180.31499 * 12 11 9 14 14 C 1.38932 * 120.71528 * 0.02562 * 13 12 11 15 15 C 1.36487 * 120.55589 * 359.97438 * 14 13 12 16 16 C 1.39933 * 119.77980 * 0.02562 * 15 14 13 17 17 C 1.36140 * 125.32528 * 185.55418 * 8 6 5 18 18 Cl 1.73598 * 126.55668 * 359.94365 * 17 8 6 19 19 C 1.47414 * 108.70471 * 1.05757 * 5 4 2 20 20 C 1.54912 * 104.83266 * 335.87397 * 19 5 4 21 21 H 1.09000 * 111.00575 * 278.89107 * 20 19 5 22 22 N 1.46509 * 111.00458 * 155.08341 * 20 19 5 23 23 C 1.36931 * 119.99954 * 86.45487 * 22 20 19 24 24 H 1.08002 * 120.00121 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00132 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00241 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99798 * 0.26849 * 25 23 22 28 28 H 1.48497 * 109.47201 * 269.72937 * 27 25 23 29 29 H 1.48503 * 109.46737 * 29.73226 * 27 25 23 30 30 H 1.48497 * 109.46851 * 149.72479 * 27 25 23 31 31 H 1.09001 * 109.47505 * 183.24193 * 1 2 3 32 32 H 1.08995 * 109.47292 * 303.24387 * 1 2 3 33 33 H 1.09002 * 109.46682 * 63.24095 * 1 2 3 34 34 H 1.09001 * 109.88046 * 21.13580 * 4 2 1 35 35 H 1.09005 * 110.01039 * 260.04734 * 4 2 1 36 36 H 1.07992 * 120.09012 * 0.33648 * 12 11 9 37 37 H 1.07999 * 119.64078 * 180.02562 * 13 12 11 38 38 H 1.08002 * 119.71782 * 179.97438 * 14 13 12 39 39 H 1.08003 * 120.11161 * 180.02562 * 15 14 13 40 40 H 1.09000 * 110.36863 * 217.03484 * 19 5 4 41 41 H 1.09006 * 110.46083 * 94.75717 * 19 5 4 42 42 H 0.96997 * 119.99856 * 266.45380 * 22 20 19 43 43 H 0.96997 * 119.99966 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 1.2074 5 7 3.2445 -1.5507 0.7392 6 6 3.9914 -2.3846 1.4897 7 8 4.8826 -3.0333 0.9745 8 6 3.7296 -2.5103 2.9295 9 7 2.6865 -1.9085 3.6075 10 1 2.0145 -1.3371 3.2039 11 6 2.7434 -2.2430 4.9390 12 6 1.9516 -1.9173 6.0376 13 6 2.2704 -2.4123 7.2820 14 6 3.3762 -3.2351 7.4564 15 6 4.1673 -3.5685 6.3954 16 6 3.8635 -3.0776 5.1206 17 6 4.4798 -3.2332 3.8058 18 17 5.8982 -4.1617 3.4319 19 6 3.4633 -1.2499 -0.6873 20 6 2.0790 -0.7956 -1.2136 21 1 1.4454 -1.6537 -1.4380 22 7 2.2215 0.0694 -2.3875 23 6 2.3175 -0.4824 -3.6370 24 1 2.2885 -1.5553 -3.7572 25 6 2.4531 0.3371 -4.7491 26 7 2.5459 -0.1933 -5.9501 27 14 2.5122 2.1925 -4.5404 28 1 1.1354 2.7435 -4.6183 29 1 3.1038 2.5234 -3.2191 30 1 3.3445 2.7855 -5.6179 31 1 -0.3634 -1.0260 0.0581 32 1 -0.3633 0.5633 0.8594 33 1 -0.3633 0.4627 -0.9176 34 1 1.3129 -1.4757 1.5777 35 1 2.3735 -0.1042 1.9997 36 1 1.0898 -1.2785 5.9135 37 1 1.6543 -2.1582 8.1318 38 1 3.6117 -3.6141 8.4400 39 1 5.0249 -4.2090 6.5391 40 1 3.7960 -2.1427 -1.2166 41 1 4.1936 -0.4486 -0.8001 42 1 2.2479 1.0330 -2.2795 43 1 2.6402 0.3794 -6.7273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054853780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:09 Heat of formation + Delta-G solvation = 47.710965 kcal Electronic energy + Delta-G solvation = -27613.496803 eV Core-core repulsion = 23685.761901 eV Total energy + Delta-G solvation = -3927.734902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82396 -39.87160 -37.92661 -37.08850 -36.50944 -34.44983 -32.62657 -32.19040 -31.20381 -30.13785 -29.31205 -28.11236 -26.59363 -24.68379 -23.26605 -22.53533 -21.70238 -20.97649 -20.40114 -19.95510 -18.11055 -17.61994 -17.41192 -16.52617 -16.18618 -15.65486 -15.25586 -14.86199 -14.61302 -14.47265 -14.27004 -14.22495 -13.89550 -13.60363 -13.42850 -13.34794 -12.99273 -12.73196 -12.28213 -12.24493 -12.20028 -11.97102 -11.89161 -11.54038 -11.44339 -11.30170 -10.98053 -10.92593 -10.86828 -10.50368 -10.11719 -9.98239 -9.85737 -9.70530 -9.13329 -8.74522 -8.60197 -8.03724 -7.46705 -5.88768 -3.28006 0.43003 1.20995 1.68610 1.91938 2.66652 2.89800 3.12639 3.28024 3.29680 3.37554 3.49088 4.10762 4.27481 4.40141 4.47282 4.65480 4.68068 4.74631 4.80318 4.88663 5.04916 5.10436 5.16166 5.18067 5.27479 5.42764 5.49568 5.56801 5.60707 5.62318 5.87289 5.93407 5.96923 6.05387 6.09618 6.12704 6.21471 6.24946 6.28747 6.38657 6.62907 6.65888 6.94315 7.41079 7.84014 8.01931 8.29121 9.04814 9.76419 9.93291 11.28694 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.002677 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.346053 B =10457.696260 C =11646.550709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 H 0.087 0.913 4 C 0.093 3.907 5 N -0.610 5.610 6 C 0.587 3.413 7 O -0.502 6.502 8 C 0.049 3.951 9 N -0.579 5.579 10 H 0.424 0.576 11 C 0.121 3.879 12 C -0.132 4.132 13 C -0.084 4.084 14 C -0.148 4.148 15 C -0.055 4.055 16 C -0.110 4.110 17 C -0.046 4.046 18 Cl -0.011 7.011 19 C 0.083 3.917 20 C 0.183 3.817 21 H 0.076 0.924 22 N -0.733 5.733 23 C -0.255 4.255 24 H 0.093 0.907 25 C 0.011 3.989 26 N -0.927 5.927 27 Si 0.884 3.116 28 H -0.283 1.283 29 H -0.277 1.277 30 H -0.290 1.290 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.364 0.636 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -2.365 28.509 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.106 0.894 4 C -0.031 4.031 5 N -0.345 5.345 6 C 0.374 3.626 7 O -0.376 6.376 8 C -0.062 4.062 9 N -0.191 5.191 10 H 0.269 0.731 11 C 0.012 3.988 12 C -0.153 4.153 13 C -0.104 4.104 14 C -0.167 4.167 15 C -0.073 4.073 16 C -0.115 4.115 17 C -0.083 4.083 18 Cl 0.018 6.982 19 C -0.042 4.042 20 C 0.071 3.929 21 H 0.094 0.906 22 N -0.374 5.374 23 C -0.384 4.384 24 H 0.111 0.889 25 C -0.185 4.185 26 N -0.573 5.573 27 Si 0.714 3.286 28 H -0.209 1.209 29 H -0.203 1.203 30 H -0.216 1.216 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.198 0.802 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.240 -2.911 27.825 28.067 hybrid contribution -0.086 1.628 -0.170 1.639 sum -2.326 -1.283 27.656 27.783 Atomic orbital electron populations 1.21725 0.93364 1.02088 1.02440 1.22498 0.96796 0.99791 0.94204 0.89428 1.22322 0.87910 0.94619 0.98219 1.48396 1.29399 1.43702 1.12977 1.16711 0.82422 0.80148 0.83361 1.90925 1.31189 1.43950 1.71525 1.19923 0.92330 1.01509 0.92455 1.42532 1.26179 1.44201 1.06170 0.73119 1.18246 0.97272 0.98691 0.84621 1.20098 1.00539 1.04213 0.90447 1.20917 0.96919 0.96470 0.96079 1.20662 0.96343 1.00824 0.98841 1.20365 0.99085 0.97857 0.90034 1.18830 0.96887 1.03181 0.92613 1.21015 0.93825 1.01588 0.91853 1.98369 1.35205 1.70466 1.94183 1.23458 1.01559 1.01776 0.77366 1.21350 0.92259 0.93587 0.85685 0.90619 1.42613 1.88550 1.03838 1.02410 1.19048 1.43754 0.94068 0.81561 0.88923 1.24687 1.01309 0.97442 0.95110 1.69696 1.55819 1.34290 0.97492 0.86576 0.77777 0.87113 0.77155 1.20944 1.20299 1.21580 0.92383 0.92957 0.90985 0.91329 0.91733 0.85555 0.85290 0.85535 0.85449 0.89929 0.91041 0.80207 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.16 37.16 0.34 -1.15 16 2 C -0.11 -1.41 3.17 -88.79 -0.28 -1.69 16 3 H 0.09 1.09 8.00 -51.93 -0.42 0.67 16 4 C 0.09 1.01 4.70 -3.06 -0.01 1.00 16 5 N -0.61 -8.96 3.33 -171.98 -0.57 -9.54 16 6 C 0.59 9.40 7.81 -12.76 -0.10 9.30 16 7 O -0.50 -9.65 15.67 5.21 0.08 -9.57 16 8 C 0.05 0.66 6.82 -82.25 -0.56 0.10 16 9 N -0.58 -6.06 5.63 -7.33 -0.04 -6.10 16 10 H 0.42 3.46 4.75 -40.82 -0.19 3.27 16 11 C 0.12 1.25 7.26 -83.99 -0.61 0.64 16 12 C -0.13 -1.03 10.08 -39.40 -0.40 -1.42 16 13 C -0.08 -0.57 10.01 -39.53 -0.40 -0.97 16 14 C -0.15 -1.08 9.97 -39.96 -0.40 -1.48 16 15 C -0.05 -0.51 10.06 -39.58 -0.40 -0.91 16 16 C -0.11 -1.27 6.35 -105.14 -0.67 -1.94 16 17 C -0.05 -0.63 6.93 -37.21 -0.26 -0.89 16 18 Cl -0.01 -0.16 27.74 -51.86 -1.44 -1.59 16 19 C 0.08 1.44 6.63 -2.53 -0.02 1.42 16 20 C 0.18 3.14 3.13 -65.78 -0.21 2.93 16 21 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 22 N -0.73 -15.71 5.08 -51.35 -0.26 -15.97 16 23 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 24 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 25 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 26 N -0.93 -28.19 13.97 55.49 0.78 -27.41 16 27 Si 0.88 20.98 27.74 -169.99 -4.71 16.26 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 31 H 0.06 0.59 8.06 -51.93 -0.42 0.18 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.62 6.81 -51.93 -0.35 0.27 16 35 H 0.06 0.57 7.07 -51.93 -0.37 0.21 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.08 1.61 7.99 -51.93 -0.41 1.19 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.36 7.62 5.57 -40.82 -0.23 7.40 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -32.45 367.23 -10.21 -42.67 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.36 Total: 7.48 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -4.22 Total: -1.75 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.10 Total: -59.02 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.26 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.44 Total: -1.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.45 -10.21 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054853780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.377 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds