Wall clock time and date at job start Wed Apr 1 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.78232 * 2 1 4 4 C 1.54330 * 110.71998 * 123.23606 * 2 1 3 5 5 N 1.47022 * 107.27195 * 140.55804 * 4 2 1 6 6 C 1.34777 * 125.64518 * 181.09871 * 5 4 2 7 7 O 1.21673 * 119.99935 * 174.94532 * 6 5 4 8 8 C 1.46882 * 120.00240 * 354.94412 * 6 5 4 9 9 N 1.38198 * 125.32227 * 5.24929 * 8 6 5 10 10 H 0.97004 * 125.11820 * 359.97438 * 9 8 6 11 11 C 1.37406 * 109.76467 * 179.88130 * 9 8 6 12 12 C 1.39280 * 133.14752 * 180.10473 * 11 9 8 13 13 C 1.37665 * 119.81839 * 180.31499 * 12 11 9 14 14 C 1.38932 * 120.71528 * 0.02562 * 13 12 11 15 15 C 1.36487 * 120.55589 * 359.97438 * 14 13 12 16 16 C 1.39933 * 119.77980 * 0.02562 * 15 14 13 17 17 C 1.36140 * 125.32528 * 185.55418 * 8 6 5 18 18 Cl 1.73598 * 126.55668 * 359.94365 * 17 8 6 19 19 C 1.47414 * 108.70471 * 1.05757 * 5 4 2 20 20 C 1.54912 * 104.83266 * 335.87397 * 19 5 4 21 21 H 1.09000 * 111.00575 * 278.89107 * 20 19 5 22 22 N 1.46509 * 111.00458 * 155.08341 * 20 19 5 23 23 C 1.36931 * 119.99954 * 86.45487 * 22 20 19 24 24 H 1.08002 * 120.00121 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00132 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00241 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99798 * 0.26849 * 25 23 22 28 28 H 1.48497 * 109.47201 * 269.72937 * 27 25 23 29 29 H 1.48503 * 109.46737 * 29.73226 * 27 25 23 30 30 H 1.48497 * 109.46851 * 149.72479 * 27 25 23 31 31 H 1.09001 * 109.47505 * 183.24193 * 1 2 3 32 32 H 1.08995 * 109.47292 * 303.24387 * 1 2 3 33 33 H 1.09002 * 109.46682 * 63.24095 * 1 2 3 34 34 H 1.09001 * 109.88046 * 21.13580 * 4 2 1 35 35 H 1.09005 * 110.01039 * 260.04734 * 4 2 1 36 36 H 1.07992 * 120.09012 * 0.33648 * 12 11 9 37 37 H 1.07999 * 119.64078 * 180.02562 * 13 12 11 38 38 H 1.08002 * 119.71782 * 179.97438 * 14 13 12 39 39 H 1.08003 * 120.11161 * 180.02562 * 15 14 13 40 40 H 1.09000 * 110.36863 * 217.03484 * 19 5 4 41 41 H 1.09006 * 110.46083 * 94.75717 * 19 5 4 42 42 H 0.96997 * 119.99856 * 266.45380 * 22 20 19 43 43 H 0.96997 * 119.99966 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 1.2074 5 7 3.2445 -1.5507 0.7392 6 6 3.9914 -2.3846 1.4897 7 8 4.8826 -3.0333 0.9745 8 6 3.7296 -2.5103 2.9295 9 7 2.6865 -1.9085 3.6075 10 1 2.0145 -1.3371 3.2039 11 6 2.7434 -2.2430 4.9390 12 6 1.9516 -1.9173 6.0376 13 6 2.2704 -2.4123 7.2820 14 6 3.3762 -3.2351 7.4564 15 6 4.1673 -3.5685 6.3954 16 6 3.8635 -3.0776 5.1206 17 6 4.4798 -3.2332 3.8058 18 17 5.8982 -4.1617 3.4319 19 6 3.4633 -1.2499 -0.6873 20 6 2.0790 -0.7956 -1.2136 21 1 1.4454 -1.6537 -1.4380 22 7 2.2215 0.0694 -2.3875 23 6 2.3175 -0.4824 -3.6370 24 1 2.2885 -1.5553 -3.7572 25 6 2.4531 0.3371 -4.7491 26 7 2.5459 -0.1933 -5.9501 27 14 2.5122 2.1925 -4.5404 28 1 1.1354 2.7435 -4.6183 29 1 3.1038 2.5234 -3.2191 30 1 3.3445 2.7855 -5.6179 31 1 -0.3634 -1.0260 0.0581 32 1 -0.3633 0.5633 0.8594 33 1 -0.3633 0.4627 -0.9176 34 1 1.3129 -1.4757 1.5777 35 1 2.3735 -0.1042 1.9997 36 1 1.0898 -1.2785 5.9135 37 1 1.6543 -2.1582 8.1318 38 1 3.6117 -3.6141 8.4400 39 1 5.0249 -4.2090 6.5391 40 1 3.7960 -2.1427 -1.2166 41 1 4.1936 -0.4486 -0.8001 42 1 2.2479 1.0330 -2.2795 43 1 2.6402 0.3794 -6.7273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054853780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:08 Heat of formation + Delta-G solvation = 27.075801 kcal Electronic energy + Delta-G solvation = -27614.391611 eV Core-core repulsion = 23685.761901 eV Total energy + Delta-G solvation = -3928.629710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.68065 -41.00397 -39.16655 -37.85757 -37.51531 -36.14271 -34.04638 -32.97234 -32.84763 -31.11605 -30.10470 -29.42027 -27.54525 -26.12962 -24.55412 -23.39848 -22.72027 -21.96086 -21.70154 -21.01645 -19.73322 -18.71411 -18.43905 -17.73879 -16.97596 -16.78487 -16.57155 -16.06078 -15.79776 -15.51707 -15.40181 -15.05332 -14.89445 -14.87048 -14.62446 -14.43377 -14.38194 -14.10623 -13.62342 -13.23094 -13.12396 -13.01212 -12.96179 -12.83351 -12.62985 -12.39271 -12.19129 -12.14028 -11.98308 -11.86827 -11.85680 -11.46611 -11.21267 -11.03836 -10.64116 -9.95724 -9.43060 -9.36087 -8.82019 -8.04931 -5.41908 -0.41215 0.56454 0.84518 0.97490 1.37253 1.42152 1.48314 1.55961 1.95256 2.01954 2.46642 2.86461 3.12005 3.25400 3.28187 3.56972 3.58995 3.79306 3.90123 3.97171 4.13580 4.18510 4.19934 4.25649 4.31778 4.46633 4.49172 4.51481 4.64107 4.73673 4.83395 4.93104 5.03034 5.06737 5.08349 5.24984 5.25879 5.37696 5.45402 5.52918 5.64216 5.73297 6.02622 6.17945 6.21720 6.27615 6.79371 7.03209 7.74945 7.95487 9.16188 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.002677 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.346053 B =10457.696260 C =11646.550709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 H 0.098 0.902 4 C 0.092 3.908 5 N -0.608 5.608 6 C 0.583 3.417 7 O -0.548 6.548 8 C 0.032 3.968 9 N -0.565 5.565 10 H 0.434 0.566 11 C 0.116 3.884 12 C -0.133 4.133 13 C -0.076 4.076 14 C -0.140 4.140 15 C -0.073 4.073 16 C -0.135 4.135 17 C -0.059 4.059 18 Cl -0.028 7.028 19 C 0.091 3.909 20 C 0.175 3.825 21 H 0.062 0.938 22 N -0.732 5.732 23 C -0.237 4.237 24 H 0.053 0.947 25 C -0.061 4.061 26 N -0.982 5.982 27 Si 0.958 3.042 28 H -0.272 1.272 29 H -0.248 1.248 30 H -0.301 1.301 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.130 0.870 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.372 0.628 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 0.043 33.431 33.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.116 0.884 4 C -0.031 4.031 5 N -0.341 5.341 6 C 0.372 3.628 7 O -0.426 6.426 8 C -0.080 4.080 9 N -0.178 5.178 10 H 0.281 0.719 11 C 0.007 3.993 12 C -0.153 4.153 13 C -0.095 4.095 14 C -0.159 4.159 15 C -0.092 4.092 16 C -0.139 4.139 17 C -0.096 4.096 18 Cl 0.001 6.999 19 C -0.034 4.034 20 C 0.065 3.935 21 H 0.080 0.920 22 N -0.375 5.375 23 C -0.368 4.368 24 H 0.071 0.929 25 C -0.253 4.253 26 N -0.632 5.632 27 Si 0.784 3.216 28 H -0.198 1.198 29 H -0.172 1.172 30 H -0.228 1.228 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.148 0.852 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.206 0.794 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.615 -0.484 32.838 33.164 hybrid contribution 0.610 0.731 -1.510 1.785 sum -4.006 0.247 31.328 31.584 Atomic orbital electron populations 1.21728 0.91494 1.02893 1.03186 1.22439 0.98220 0.99541 0.91644 0.88408 1.22604 0.86974 0.95242 0.98234 1.48349 1.30384 1.43828 1.11584 1.17077 0.81794 0.79493 0.84446 1.90891 1.33225 1.45816 1.72671 1.19428 0.94187 1.03383 0.90957 1.42329 1.25417 1.43913 1.06161 0.71864 1.18579 0.97335 0.98528 0.84865 1.20520 1.00867 1.04239 0.89688 1.21419 0.96444 0.94775 0.96838 1.21066 0.95688 0.99811 0.99314 1.20572 1.00095 0.98605 0.89921 1.19027 0.97726 1.04688 0.92483 1.21342 0.93474 1.01496 0.93306 1.98352 1.36256 1.70924 1.94404 1.23058 1.01286 0.99809 0.79288 1.21485 0.92038 0.93704 0.86270 0.91973 1.42484 1.88598 1.04556 1.01823 1.18953 1.41541 0.92458 0.83856 0.92903 1.25561 1.02028 1.03083 0.94610 1.69898 1.58453 1.36253 0.98587 0.85383 0.78111 0.80133 0.77944 1.19772 1.17187 1.22817 0.92029 0.89112 0.92923 0.88691 0.88408 0.82545 0.81771 0.82864 0.85166 0.93498 0.91975 0.79397 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.16 71.98 0.66 -1.77 16 2 C -0.10 -2.19 3.17 -9.61 -0.03 -2.22 16 3 H 0.10 2.04 8.00 -2.38 -0.02 2.03 16 4 C 0.09 1.71 4.70 86.73 0.41 2.12 16 5 N -0.61 -17.69 3.33 -816.26 -2.71 -20.40 16 6 C 0.58 19.08 7.81 86.51 0.68 19.76 16 7 O -0.55 -22.41 15.67 -4.26 -0.07 -22.48 16 8 C 0.03 0.85 6.82 39.92 0.27 1.12 16 9 N -0.57 -10.33 5.63 -177.12 -1.00 -11.33 16 10 H 0.43 5.37 4.75 -92.71 -0.44 4.92 16 11 C 0.12 2.04 7.26 39.16 0.28 2.32 16 12 C -0.13 -1.42 10.08 22.38 0.23 -1.19 16 13 C -0.08 -0.63 10.01 22.30 0.22 -0.41 16 14 C -0.14 -1.50 9.97 22.03 0.22 -1.28 16 15 C -0.07 -1.22 10.06 22.27 0.22 -0.99 16 16 C -0.13 -2.92 6.35 -20.20 -0.13 -3.04 16 17 C -0.06 -1.61 6.93 23.81 0.16 -1.45 16 18 Cl -0.03 -0.82 27.74 -2.72 -0.08 -0.90 16 19 C 0.09 3.29 6.63 86.86 0.58 3.86 16 20 C 0.18 6.02 3.13 46.38 0.15 6.17 16 21 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 22 N -0.73 -31.45 5.08 -316.36 -1.61 -33.05 16 23 C -0.24 -13.06 10.47 84.03 0.88 -12.18 16 24 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 25 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 26 N -0.98 -62.39 13.97 21.65 0.30 -62.09 16 27 Si 0.96 43.55 27.74 68.60 1.90 45.45 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 H -0.25 -9.92 6.52 99.48 0.65 -9.27 16 30 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 31 H 0.06 1.07 8.06 -2.39 -0.02 1.05 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.33 6.81 -2.39 -0.02 1.31 16 35 H 0.10 1.28 7.07 -2.38 -0.02 1.26 16 36 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.16 0.27 8.06 -2.91 -0.02 0.24 16 38 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.05 1.99 7.99 -2.39 -0.02 1.97 16 41 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.37 14.91 5.57 -92.71 -0.52 14.39 16 43 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -77.56 367.23 2.06 -75.51 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.05 Total: 21.51 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.26 Total: 7.78 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.02 Total: -126.87 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.07 Total: -22.48 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.90 Total: 45.45 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -77.56 2.06 -75.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054853780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.584 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds