Wall clock time and date at job start Wed Apr 1 2020 05:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.64155 * 2 1 4 4 C 1.54335 * 111.00049 * 236.91997 * 2 1 3 5 5 N 1.47022 * 107.26769 * 219.60404 * 4 2 1 6 6 C 1.34777 * 125.64529 * 178.85223 * 5 4 2 7 7 O 1.21649 * 119.99635 * 184.81693 * 6 5 4 8 8 C 1.47055 * 120.00247 * 4.82138 * 6 5 4 9 9 C 1.35875 * 125.43164 * 174.40888 * 8 6 5 10 10 C 1.41581 * 107.73395 * 179.97438 * 9 8 6 11 11 C 1.40110 * 133.36955 * 180.29478 * 10 9 8 12 12 C 1.36536 * 119.82397 * 180.21145 * 11 10 9 13 13 Cl 1.73595 * 119.70390 * 179.73176 * 12 11 10 14 14 C 1.39040 * 120.58808 * 359.46243 * 12 11 10 15 15 C 1.37664 * 120.63379 * 0.26887 * 14 12 11 16 16 C 1.39228 * 119.82530 * 0.02562 * 15 14 12 17 17 N 1.37525 * 133.15681 * 179.97438 * 16 15 14 18 18 H 0.97000 * 125.60779 * 0.02562 * 17 16 15 19 19 C 1.47421 * 108.70189 * 358.58628 * 5 4 2 20 20 C 1.54910 * 104.83313 * 24.35696 * 19 5 4 21 21 H 1.08998 * 111.00229 * 81.06290 * 20 19 5 22 22 N 1.46495 * 111.00457 * 204.91584 * 20 19 5 23 23 C 1.36935 * 119.99971 * 273.54375 * 22 20 19 24 24 H 1.08009 * 120.00312 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00264 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99981 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00167 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47262 * 89.99711 * 27 25 23 29 29 H 1.48500 * 109.47200 * 209.99921 * 27 25 23 30 30 H 1.48501 * 109.47352 * 329.99612 * 27 25 23 31 31 H 1.09007 * 109.47088 * 296.85756 * 1 2 3 32 32 H 1.09000 * 109.47117 * 56.85754 * 1 2 3 33 33 H 1.08999 * 109.47237 * 176.85808 * 1 2 3 34 34 H 1.09003 * 109.98706 * 100.12931 * 4 2 1 35 35 H 1.09006 * 109.78128 * 338.96534 * 4 2 1 36 36 H 1.08000 * 126.13015 * 0.02562 * 9 8 6 37 37 H 1.08005 * 120.08961 * 359.96977 * 11 10 9 38 38 H 1.07999 * 119.68231 * 180.29687 * 14 12 11 39 39 H 1.07994 * 120.08413 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.36659 * 143.19685 * 19 5 4 41 41 H 1.09003 * 110.36634 * 265.41233 * 19 5 4 42 42 H 0.96993 * 120.00221 * 93.54791 * 22 20 19 43 43 H 0.96996 * 120.00147 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2073 5 7 3.2494 -1.5471 -0.7354 6 6 4.0003 -2.3786 -1.4845 7 8 4.8916 -3.0253 -0.9675 8 6 3.7423 -2.5041 -2.9268 9 6 4.4941 -3.2218 -3.8020 10 6 3.9111 -3.0845 -5.0849 11 6 4.2377 -3.5918 -6.3494 12 6 3.4667 -3.2710 -7.4296 13 17 3.8782 -3.8956 -8.9961 14 6 2.3517 -2.4530 -7.2851 15 6 2.0078 -1.9472 -6.0518 16 6 2.7822 -2.2554 -4.9366 17 7 2.6969 -1.9111 -3.6079 18 1 2.0145 -1.3456 -3.2137 19 6 3.4652 -1.2448 0.6913 20 6 2.0789 -0.7935 1.2151 21 1 1.4469 -1.6530 1.4383 22 7 2.2175 0.0726 2.3885 23 6 2.3128 -0.4782 3.6386 24 1 2.2862 -1.5512 3.7595 25 6 2.4436 0.3424 4.7505 26 7 2.4765 1.6500 4.6033 27 14 2.5743 -0.4090 6.4557 28 1 4.0022 -0.6566 6.7794 29 1 1.9952 0.5254 7.4541 30 1 1.8292 -1.6931 6.4893 31 1 -0.3634 0.4643 0.9169 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3633 -1.0261 -0.0563 34 1 2.3848 -0.0961 -1.9950 35 1 1.3215 -1.4702 -1.5824 36 1 5.3774 -3.7949 -3.5619 37 1 5.0993 -4.2317 -6.4701 38 1 1.7493 -2.2125 -8.1487 39 1 1.1396 -1.3131 -5.9497 40 1 3.7992 -2.1365 1.2217 41 1 4.1943 -0.4423 0.8029 42 1 2.2417 1.0361 2.2800 43 1 2.5675 2.2234 5.3802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054962371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:29 Heat of formation + Delta-G solvation = 37.935036 kcal Electronic energy + Delta-G solvation = -27130.995285 eV Core-core repulsion = 23202.836467 eV Total energy + Delta-G solvation = -3928.158818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98469 -39.85236 -37.92659 -37.52010 -36.16760 -34.34808 -32.69431 -32.48247 -30.94720 -29.85760 -29.43356 -27.76920 -26.55268 -24.70160 -23.50229 -22.61797 -21.80377 -20.98417 -20.24310 -19.93412 -17.97751 -17.59892 -17.19324 -16.54145 -16.32977 -15.64166 -15.22508 -14.85962 -14.63561 -14.48250 -14.24512 -14.11076 -13.75123 -13.34289 -13.23208 -13.20252 -13.15033 -12.90389 -12.81974 -12.67796 -12.10401 -11.82165 -11.69220 -11.26517 -11.18249 -11.14381 -11.12194 -10.88990 -10.77767 -10.37141 -10.29093 -10.16495 -10.04676 -9.83654 -9.10881 -8.69562 -8.49571 -8.13049 -7.17676 -5.91987 -3.23364 0.39379 1.05003 1.82559 1.87331 2.56055 2.92972 3.18997 3.36726 3.40174 3.42935 3.43445 4.22327 4.26491 4.43294 4.53843 4.58569 4.80006 4.80424 4.92291 4.95704 5.02471 5.12079 5.23893 5.28905 5.50724 5.51677 5.60217 5.61517 5.66486 5.80693 5.83101 5.92499 5.97767 6.06639 6.09180 6.20370 6.28306 6.29083 6.40822 6.42710 6.58071 6.74068 7.00489 7.46000 7.58511 8.03593 8.25041 9.37588 9.88611 10.23555 11.29696 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.029417 B = 0.001999 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.598938 B =14004.067091 C =14741.165328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.089 0.911 4 C 0.094 3.906 5 N -0.610 5.610 6 C 0.590 3.410 7 O -0.521 6.521 8 C 0.036 3.964 9 C -0.111 4.111 10 C -0.107 4.107 11 C -0.050 4.050 12 C -0.062 4.062 13 Cl -0.076 7.076 14 C -0.085 4.085 15 C -0.114 4.114 16 C 0.109 3.891 17 N -0.577 5.577 18 H 0.422 0.578 19 C 0.081 3.919 20 C 0.178 3.822 21 H 0.067 0.933 22 N -0.708 5.708 23 C -0.250 4.250 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.909 3.091 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.830 -6.162 -25.259 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.107 0.893 4 C -0.030 4.030 5 N -0.343 5.343 6 C 0.378 3.622 7 O -0.397 6.397 8 C -0.074 4.074 9 C -0.138 4.138 10 C -0.112 4.112 11 C -0.069 4.069 12 C -0.090 4.090 13 Cl -0.048 7.048 14 C -0.105 4.105 15 C -0.135 4.135 16 C -0.002 4.002 17 N -0.186 5.186 18 H 0.267 0.733 19 C -0.044 4.044 20 C 0.065 3.935 21 H 0.085 0.915 22 N -0.348 5.348 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.203 4.203 26 N -0.576 5.576 27 Si 0.740 3.260 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.177 0.823 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.222 0.778 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.371 -6.591 -24.789 25.760 hybrid contribution -0.139 0.281 0.882 0.936 sum -2.510 -6.310 -23.907 24.853 Atomic orbital electron populations 1.21704 0.93545 1.01700 1.02490 1.22463 0.96597 0.99978 0.93958 0.89261 1.22327 0.87765 0.94542 0.98374 1.48459 1.29310 1.43494 1.13023 1.16846 0.82030 0.79759 0.83598 1.90864 1.32006 1.44928 1.71882 1.20333 0.92413 1.02055 0.92580 1.20875 1.01293 1.01896 0.89701 1.18015 0.97297 1.02222 0.93689 1.20237 0.98947 0.98379 0.89356 1.20221 0.99092 1.03043 0.86643 1.98363 1.93421 1.86379 1.26602 1.20702 0.95845 0.96742 0.97242 1.20000 1.00502 1.03314 0.89676 1.18432 0.97740 0.99229 0.84839 1.42769 1.25812 1.44012 1.06016 0.73341 1.23570 1.02139 1.01406 0.77300 1.21372 0.91840 0.93662 0.86583 0.91522 1.42262 1.86852 1.05053 1.00648 1.19233 1.43419 0.91975 0.83482 0.90898 1.24772 1.02094 0.95352 0.98127 1.69653 1.56364 1.02047 1.29535 0.86168 0.77811 0.78004 0.84056 1.21498 1.21683 1.20609 0.90853 0.93099 0.92759 0.91752 0.91533 0.82295 0.84610 0.84498 0.84945 0.90464 0.90946 0.77802 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.17 37.16 0.34 -1.25 16 2 C -0.11 -1.47 3.15 -88.78 -0.28 -1.75 16 3 H 0.09 1.23 8.00 -51.93 -0.42 0.82 16 4 C 0.09 1.05 4.71 -3.06 -0.01 1.04 16 5 N -0.61 -8.99 3.33 -171.91 -0.57 -9.57 16 6 C 0.59 9.22 7.82 -12.69 -0.10 9.12 16 7 O -0.52 -9.90 17.08 5.23 0.09 -9.81 16 8 C 0.04 0.46 6.81 -82.29 -0.56 -0.10 16 9 C -0.11 -1.33 10.54 -39.15 -0.41 -1.74 16 10 C -0.11 -1.16 6.16 -106.94 -0.66 -1.82 16 11 C -0.05 -0.47 9.81 -39.49 -0.39 -0.85 16 12 C -0.06 -0.55 6.28 -39.90 -0.25 -0.80 16 13 Cl -0.08 -0.62 28.93 -51.86 -1.50 -2.12 16 14 C -0.09 -0.65 9.79 -39.49 -0.39 -1.04 16 15 C -0.11 -0.89 10.07 -39.42 -0.40 -1.29 16 16 C 0.11 1.08 7.25 -83.96 -0.61 0.47 16 17 N -0.58 -5.82 5.68 -7.35 -0.04 -5.87 16 18 H 0.42 3.42 4.84 -40.82 -0.20 3.23 16 19 C 0.08 1.42 6.62 -2.53 -0.02 1.41 16 20 C 0.18 3.15 3.13 -65.78 -0.21 2.94 16 21 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 22 N -0.71 -16.07 5.28 -51.35 -0.27 -16.34 16 23 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 24 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.58 13.06 55.49 0.72 -25.85 16 27 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.06 0.60 7.13 -51.93 -0.37 0.23 16 35 H 0.07 0.62 6.80 -51.93 -0.35 0.27 16 36 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.08 1.50 7.99 -51.93 -0.41 1.08 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.39 9.32 7.71 -40.82 -0.31 9.00 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -30.46 372.40 -10.57 -41.04 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.41 Total: 8.93 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -4.18 Total: -2.59 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.16 Total: -57.63 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.46 -10.57 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054962371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.974 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds