Wall clock time and date at job start Wed Apr 1 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.64155 * 2 1 4 4 C 1.54335 * 111.00049 * 236.91997 * 2 1 3 5 5 N 1.47022 * 107.26769 * 219.60404 * 4 2 1 6 6 C 1.34777 * 125.64529 * 178.85223 * 5 4 2 7 7 O 1.21649 * 119.99635 * 184.81693 * 6 5 4 8 8 C 1.47055 * 120.00247 * 4.82138 * 6 5 4 9 9 C 1.35875 * 125.43164 * 174.40888 * 8 6 5 10 10 C 1.41581 * 107.73395 * 179.97438 * 9 8 6 11 11 C 1.40110 * 133.36955 * 180.29478 * 10 9 8 12 12 C 1.36536 * 119.82397 * 180.21145 * 11 10 9 13 13 Cl 1.73595 * 119.70390 * 179.73176 * 12 11 10 14 14 C 1.39040 * 120.58808 * 359.46243 * 12 11 10 15 15 C 1.37664 * 120.63379 * 0.26887 * 14 12 11 16 16 C 1.39228 * 119.82530 * 0.02562 * 15 14 12 17 17 N 1.37525 * 133.15681 * 179.97438 * 16 15 14 18 18 H 0.97000 * 125.60779 * 0.02562 * 17 16 15 19 19 C 1.47421 * 108.70189 * 358.58628 * 5 4 2 20 20 C 1.54910 * 104.83313 * 24.35696 * 19 5 4 21 21 H 1.08998 * 111.00229 * 81.06290 * 20 19 5 22 22 N 1.46495 * 111.00457 * 204.91584 * 20 19 5 23 23 C 1.36935 * 119.99971 * 273.54375 * 22 20 19 24 24 H 1.08009 * 120.00312 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00264 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99981 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00167 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47262 * 89.99711 * 27 25 23 29 29 H 1.48500 * 109.47200 * 209.99921 * 27 25 23 30 30 H 1.48501 * 109.47352 * 329.99612 * 27 25 23 31 31 H 1.09007 * 109.47088 * 296.85756 * 1 2 3 32 32 H 1.09000 * 109.47117 * 56.85754 * 1 2 3 33 33 H 1.08999 * 109.47237 * 176.85808 * 1 2 3 34 34 H 1.09003 * 109.98706 * 100.12931 * 4 2 1 35 35 H 1.09006 * 109.78128 * 338.96534 * 4 2 1 36 36 H 1.08000 * 126.13015 * 0.02562 * 9 8 6 37 37 H 1.08005 * 120.08961 * 359.96977 * 11 10 9 38 38 H 1.07999 * 119.68231 * 180.29687 * 14 12 11 39 39 H 1.07994 * 120.08413 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.36659 * 143.19685 * 19 5 4 41 41 H 1.09003 * 110.36634 * 265.41233 * 19 5 4 42 42 H 0.96993 * 120.00221 * 93.54791 * 22 20 19 43 43 H 0.96996 * 120.00147 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2073 5 7 3.2494 -1.5471 -0.7354 6 6 4.0003 -2.3786 -1.4845 7 8 4.8916 -3.0253 -0.9675 8 6 3.7423 -2.5041 -2.9268 9 6 4.4941 -3.2218 -3.8020 10 6 3.9111 -3.0845 -5.0849 11 6 4.2377 -3.5918 -6.3494 12 6 3.4667 -3.2710 -7.4296 13 17 3.8782 -3.8956 -8.9961 14 6 2.3517 -2.4530 -7.2851 15 6 2.0078 -1.9472 -6.0518 16 6 2.7822 -2.2554 -4.9366 17 7 2.6969 -1.9111 -3.6079 18 1 2.0145 -1.3456 -3.2137 19 6 3.4652 -1.2448 0.6913 20 6 2.0789 -0.7935 1.2151 21 1 1.4469 -1.6530 1.4383 22 7 2.2175 0.0726 2.3885 23 6 2.3128 -0.4782 3.6386 24 1 2.2862 -1.5512 3.7595 25 6 2.4436 0.3424 4.7505 26 7 2.4765 1.6500 4.6033 27 14 2.5743 -0.4090 6.4557 28 1 4.0022 -0.6566 6.7794 29 1 1.9952 0.5254 7.4541 30 1 1.8292 -1.6931 6.4893 31 1 -0.3634 0.4643 0.9169 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3633 -1.0261 -0.0563 34 1 2.3848 -0.0961 -1.9950 35 1 1.3215 -1.4702 -1.5824 36 1 5.3774 -3.7949 -3.5619 37 1 5.0993 -4.2317 -6.4701 38 1 1.7493 -2.2125 -8.1487 39 1 1.1396 -1.3131 -5.9497 40 1 3.7992 -2.1365 1.2217 41 1 4.1943 -0.4423 0.8029 42 1 2.2417 1.0361 2.2800 43 1 2.5675 2.2234 5.3802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054962371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:28 Heat of formation + Delta-G solvation = 20.175509 kcal Electronic energy + Delta-G solvation = -27131.765396 eV Core-core repulsion = 23202.836467 eV Total energy + Delta-G solvation = -3928.928929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.82286 -41.01309 -39.11416 -38.34453 -36.85693 -36.03779 -34.00371 -33.32980 -32.55028 -30.85685 -30.22279 -29.13255 -27.55625 -26.23603 -24.77222 -23.50215 -22.79433 -21.96431 -21.49111 -21.00415 -19.34373 -18.70084 -18.44938 -17.66941 -17.26360 -16.77286 -16.52066 -16.05836 -15.64281 -15.48985 -15.37052 -15.27390 -14.90451 -14.66857 -14.42687 -14.35111 -14.15974 -14.03127 -13.76053 -13.38789 -13.31812 -13.10092 -12.93309 -12.89592 -12.38790 -12.28077 -12.20722 -12.06638 -11.83303 -11.77327 -11.76116 -11.49858 -11.36465 -11.04523 -11.00632 -9.94129 -9.27479 -9.10028 -8.89140 -7.99400 -5.28985 -0.40410 0.35727 0.93034 1.22095 1.46159 1.47996 1.54942 1.58243 1.91785 2.12597 2.53229 2.69178 3.21628 3.35462 3.38281 3.58737 3.72484 3.91243 3.94923 4.03780 4.09352 4.20381 4.25652 4.29941 4.32926 4.39494 4.48076 4.54224 4.77150 4.78131 4.83661 4.90395 4.95670 5.06160 5.08508 5.16302 5.27573 5.30202 5.37093 5.45447 5.49753 5.51145 5.82083 6.21939 6.26469 6.32249 6.82060 7.30299 8.00441 8.24811 9.22844 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.029417 B = 0.001999 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.598938 B =14004.067091 C =14741.165328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.095 3.905 5 N -0.609 5.609 6 C 0.589 3.411 7 O -0.568 6.568 8 C 0.018 3.982 9 C -0.112 4.112 10 C -0.127 4.127 11 C -0.058 4.058 12 C -0.067 4.067 13 Cl -0.073 7.073 14 C -0.079 4.079 15 C -0.109 4.109 16 C 0.108 3.892 17 N -0.565 5.565 18 H 0.432 0.568 19 C 0.091 3.909 20 C 0.172 3.828 21 H 0.063 0.937 22 N -0.718 5.718 23 C -0.246 4.246 24 H 0.073 0.927 25 C -0.066 4.066 26 N -0.962 5.962 27 Si 0.967 3.033 28 H -0.291 1.291 29 H -0.294 1.294 30 H -0.270 1.270 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.379 0.621 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -6.280 -28.326 29.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 H 0.104 0.896 4 C -0.027 4.027 5 N -0.341 5.341 6 C 0.379 3.621 7 O -0.447 6.447 8 C -0.092 4.092 9 C -0.139 4.139 10 C -0.132 4.132 11 C -0.077 4.077 12 C -0.095 4.095 13 Cl -0.044 7.044 14 C -0.099 4.099 15 C -0.130 4.130 16 C -0.003 4.003 17 N -0.175 5.175 18 H 0.278 0.722 19 C -0.035 4.035 20 C 0.061 3.939 21 H 0.081 0.919 22 N -0.357 5.357 23 C -0.377 4.377 24 H 0.091 0.909 25 C -0.259 4.259 26 N -0.612 5.612 27 Si 0.796 3.204 28 H -0.219 1.219 29 H -0.220 1.220 30 H -0.195 1.195 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.174 0.826 37 H 0.161 0.839 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.212 0.788 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.363 -6.726 -27.905 29.033 hybrid contribution 0.483 0.242 1.625 1.713 sum -3.880 -6.485 -26.279 27.344 Atomic orbital electron populations 1.21674 0.91722 1.02748 1.02748 1.22374 0.98000 0.99269 0.92222 0.89637 1.22546 0.87036 0.95140 0.97965 1.48414 1.30299 1.43726 1.11630 1.17218 0.81228 0.78918 0.84736 1.90830 1.34015 1.46817 1.73059 1.19773 0.94333 1.04193 0.90864 1.21010 1.01084 1.01268 0.90513 1.18100 0.98117 1.03453 0.93564 1.20356 0.99539 0.98660 0.89190 1.20403 0.99371 1.03073 0.86610 1.98369 1.93460 1.86369 1.26181 1.21071 0.95239 0.95426 0.98174 1.20359 1.00920 1.03102 0.88587 1.18706 0.97681 0.98813 0.85088 1.42563 1.25240 1.43834 1.05905 0.72200 1.23121 1.01447 0.99526 0.79415 1.21518 0.91833 0.93687 0.86834 0.91940 1.42340 1.86964 1.05129 1.01228 1.19547 1.41235 0.92024 0.84936 0.90891 1.25475 1.03252 0.95822 1.01366 1.69782 1.58475 1.03046 1.29885 0.85243 0.77390 0.77510 0.80227 1.21861 1.22001 1.19514 0.93528 0.89506 0.91722 0.88758 0.88512 0.82642 0.83942 0.81954 0.81682 0.93058 0.92805 0.78803 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.17 71.98 0.66 -2.05 16 2 C -0.10 -2.47 3.15 -9.60 -0.03 -2.50 16 3 H 0.09 2.24 8.00 -2.39 -0.02 2.22 16 4 C 0.10 1.88 4.71 86.73 0.41 2.29 16 5 N -0.61 -17.70 3.33 -816.04 -2.71 -20.41 16 6 C 0.59 18.53 7.82 86.56 0.68 19.21 16 7 O -0.57 -22.56 17.08 -4.19 -0.07 -22.63 16 8 C 0.02 0.45 6.81 39.91 0.27 0.72 16 9 C -0.11 -2.63 10.54 22.55 0.24 -2.39 16 10 C -0.13 -2.55 6.16 -21.36 -0.13 -2.68 16 11 C -0.06 -0.99 9.81 22.33 0.22 -0.77 16 12 C -0.07 -0.99 6.28 22.06 0.14 -0.85 16 13 Cl -0.07 -1.02 28.93 -2.72 -0.08 -1.10 16 14 C -0.08 -0.90 9.79 22.33 0.22 -0.68 16 15 C -0.11 -1.23 10.07 22.37 0.23 -1.00 16 16 C 0.11 1.83 7.25 39.13 0.28 2.11 16 17 N -0.57 -9.78 5.68 -177.16 -1.01 -10.78 16 18 H 0.43 5.25 4.84 -92.71 -0.45 4.80 16 19 C 0.09 3.31 6.62 86.86 0.58 3.89 16 20 C 0.17 6.14 3.13 46.39 0.15 6.29 16 21 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 22 N -0.72 -33.34 5.28 -316.37 -1.67 -35.01 16 23 C -0.25 -13.03 9.98 84.03 0.84 -12.19 16 24 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 25 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 26 N -0.96 -56.42 13.06 21.65 0.28 -56.14 16 27 Si 0.97 45.20 29.55 68.60 2.03 47.22 16 28 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 29 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 30 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 31 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.20 8.08 -2.39 -0.02 1.19 16 34 H 0.09 1.39 7.13 -2.39 -0.02 1.37 16 35 H 0.10 1.40 6.80 -2.38 -0.02 1.38 16 36 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 39 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 40 H 0.05 2.11 7.99 -2.39 -0.02 2.09 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.38 18.74 7.71 -92.71 -0.71 18.03 16 43 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.11 372.40 1.88 -67.23 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.10 Total: 25.41 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.21 Total: 6.20 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -5.11 Total: -122.35 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.07 Total: -22.63 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -69.11 1.88 -67.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054962371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.410 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds