Wall clock time and date at job start Wed Apr 1 2020 05:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.64240 * 2 1 4 4 C 1.54326 * 110.71505 * 123.14212 * 2 1 3 5 5 N 1.47023 * 107.27304 * 140.73478 * 4 2 1 6 6 C 1.34770 * 125.64973 * 181.02027 * 5 4 2 7 7 O 1.21650 * 120.00176 * 5.62205 * 6 5 4 8 8 C 1.47056 * 119.99984 * 185.62081 * 6 5 4 9 9 C 1.35874 * 125.43151 * 187.16044 * 8 6 5 10 10 C 1.41585 * 107.73315 * 180.25719 * 9 8 6 11 11 C 1.40109 * 133.36354 * 179.72952 * 10 9 8 12 12 C 1.36535 * 119.82174 * 180.02562 * 11 10 9 13 13 Cl 1.73593 * 119.70604 * 179.97438 * 12 11 10 14 14 C 1.39033 * 120.58492 * 359.97438 * 12 11 10 15 15 C 1.37663 * 120.64221 * 0.02562 * 14 12 11 16 16 C 1.39227 * 119.82452 * 359.97438 * 15 14 12 17 17 N 1.37517 * 133.16737 * 179.97438 * 16 15 14 18 18 H 0.97006 * 125.61071 * 359.97438 * 17 16 15 19 19 C 1.47429 * 108.70019 * 1.28090 * 5 4 2 20 20 C 1.55129 * 104.72189 * 335.55800 * 19 5 4 21 21 H 1.09002 * 110.93713 * 155.28808 * 20 19 5 22 22 N 1.46506 * 111.19088 * 279.18665 * 20 19 5 23 23 C 1.36927 * 120.00091 * 267.19056 * 22 20 19 24 24 H 1.08001 * 120.00569 * 0.02562 * 23 22 20 25 25 C 1.38818 * 120.00049 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00029 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99643 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47049 * 89.99791 * 27 25 23 29 29 H 1.48503 * 109.46922 * 209.99335 * 27 25 23 30 30 H 1.48497 * 109.47317 * 329.99495 * 27 25 23 31 31 H 1.08999 * 109.47144 * 298.31901 * 1 2 3 32 32 H 1.09006 * 109.46864 * 58.31325 * 1 2 3 33 33 H 1.08999 * 109.47504 * 178.31019 * 1 2 3 34 34 H 1.08998 * 109.88315 * 21.31264 * 4 2 1 35 35 H 1.09006 * 110.00708 * 260.21904 * 4 2 1 36 36 H 1.08004 * 126.13200 * 359.96411 * 9 8 6 37 37 H 1.07999 * 120.09008 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.68335 * 179.97438 * 14 12 11 39 39 H 1.07997 * 120.09352 * 179.97438 * 15 14 12 40 40 H 1.09003 * 110.36232 * 94.48351 * 19 5 4 41 41 H 1.09000 * 110.36357 * 216.80627 * 19 5 4 42 42 H 0.97007 * 119.99608 * 87.19290 * 22 20 19 43 43 H 0.97000 * 119.99602 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7892 1.2087 5 7 3.2470 -1.5462 0.7428 6 6 3.9955 -2.3768 1.4953 7 8 3.6620 -2.6295 2.6376 8 6 5.2155 -2.9775 0.9356 9 6 5.9736 -3.9294 1.5400 10 6 7.0552 -4.2311 0.6777 11 6 8.1406 -5.1125 0.7680 12 6 9.0450 -5.1827 -0.2525 13 17 10.3890 -6.2753 -0.1372 14 6 8.8989 -4.3870 -1.3832 15 6 7.8407 -3.5135 -1.4945 16 6 6.9056 -3.4242 -0.4670 17 7 5.7714 -2.6669 -0.2903 18 1 5.4219 -2.0176 -0.9206 19 6 3.4706 -1.2414 -0.6822 20 6 2.0828 -0.7949 -1.2123 21 1 2.1881 -0.1518 -2.0860 22 7 1.2342 -1.9506 -1.5137 23 6 1.2125 -2.4726 -2.7793 24 1 1.8213 -2.0328 -3.5555 25 6 0.4088 -3.5679 -3.0648 26 7 0.3876 -4.0693 -4.2815 27 14 -0.6436 -4.3291 -1.7222 28 1 -1.9746 -3.6709 -1.7037 29 1 -0.8127 -5.7802 -1.9889 30 1 0.0198 -4.1415 -0.4070 31 1 -0.3633 0.4875 0.9047 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3634 -1.0272 -0.0303 34 1 1.3139 -1.4754 1.5781 35 1 2.3706 -0.1011 2.0011 36 1 5.7874 -4.3726 2.5072 37 1 8.2616 -5.7347 1.6424 38 1 9.6232 -4.4540 -2.1816 39 1 7.7361 -2.8992 -2.3766 40 1 4.1970 -0.4357 -0.7882 41 1 3.8102 -2.1316 -1.2117 42 1 0.6876 -2.3458 -0.8165 43 1 -0.1742 -4.8345 -4.4809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054962372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:31 Heat of formation + Delta-G solvation = 26.992834 kcal Electronic energy + Delta-G solvation = -27957.520250 eV Core-core repulsion = 24028.886942 eV Total energy + Delta-G solvation = -3928.633307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.81825 -41.05178 -39.19724 -38.35990 -36.87280 -35.87281 -34.14189 -33.32215 -32.72202 -30.54936 -30.31583 -29.75414 -27.70824 -25.72746 -24.87653 -23.70056 -22.88768 -22.06998 -21.01361 -20.89898 -19.83980 -18.73749 -18.48803 -17.61908 -17.21003 -16.93164 -16.56023 -16.04772 -15.87780 -15.63644 -15.38009 -15.18670 -14.90233 -14.64637 -14.58278 -14.16647 -14.11281 -13.91606 -13.79468 -13.55358 -13.37943 -13.20449 -13.13851 -12.96085 -12.41618 -12.36149 -12.15129 -11.99762 -11.84145 -11.78394 -11.66044 -11.50937 -11.38990 -11.09021 -11.05030 -9.94832 -9.36101 -9.24258 -8.90350 -8.06591 -5.38029 -0.41056 0.33895 0.92040 1.18586 1.30401 1.33213 1.37746 1.64279 1.94473 2.15194 2.41620 2.66830 3.21000 3.23691 3.49926 3.55993 3.62937 3.73653 3.92676 3.99606 4.07535 4.23220 4.27092 4.29275 4.44388 4.44991 4.46722 4.61836 4.72042 4.75073 4.85000 4.86426 4.91995 5.00461 5.11152 5.15118 5.24034 5.27249 5.38652 5.47244 5.49024 5.75825 5.80995 6.18284 6.23817 6.29694 6.84130 7.03664 7.80323 7.95970 9.14203 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.003125 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.385519 B = 8956.426659 C =10117.715063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.127 0.873 4 C 0.110 3.890 5 N -0.604 5.604 6 C 0.590 3.410 7 O -0.566 6.566 8 C 0.015 3.985 9 C -0.117 4.117 10 C -0.127 4.127 11 C -0.057 4.057 12 C -0.066 4.066 13 Cl -0.069 7.069 14 C -0.080 4.080 15 C -0.114 4.114 16 C 0.102 3.898 17 N -0.566 5.566 18 H 0.430 0.570 19 C 0.056 3.944 20 C 0.167 3.833 21 H 0.100 0.900 22 N -0.737 5.737 23 C -0.220 4.220 24 H 0.076 0.924 25 C -0.051 4.051 26 N -0.975 5.975 27 Si 0.932 3.068 28 H -0.274 1.274 29 H -0.302 1.302 30 H -0.271 1.271 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.362 0.638 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.126 7.314 8.788 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 H 0.145 0.855 4 C -0.012 4.012 5 N -0.335 5.335 6 C 0.379 3.621 7 O -0.446 6.446 8 C -0.095 4.095 9 C -0.144 4.144 10 C -0.131 4.131 11 C -0.076 4.076 12 C -0.094 4.094 13 Cl -0.040 7.040 14 C -0.100 4.100 15 C -0.135 4.135 16 C -0.009 4.009 17 N -0.175 5.175 18 H 0.276 0.724 19 C -0.069 4.069 20 C 0.057 3.943 21 H 0.118 0.882 22 N -0.379 5.379 23 C -0.351 4.351 24 H 0.094 0.906 25 C -0.243 4.243 26 N -0.626 5.626 27 Si 0.762 3.238 28 H -0.200 1.200 29 H -0.229 1.229 30 H -0.197 1.197 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.180 0.820 39 H 0.176 0.824 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.195 0.805 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.984 7.169 9.130 19.755 hybrid contribution -1.097 -1.062 0.312 1.558 sum 14.887 6.107 9.442 18.657 Atomic orbital electron populations 1.21623 0.93656 1.01166 1.02741 1.22578 0.96915 1.00174 0.92195 0.85471 1.22186 0.86607 0.94335 0.98071 1.48365 1.29526 1.43589 1.12034 1.17055 0.82118 0.78270 0.84634 1.90792 1.72292 1.62422 1.19108 1.19991 0.97445 1.03446 0.88626 1.21004 0.94246 0.98215 1.00898 1.18131 0.98014 1.01303 0.95699 1.20360 0.91446 0.97029 0.98803 1.20365 0.92950 0.98399 0.97668 1.98360 1.44708 1.62725 1.98248 1.21041 0.97963 0.93948 0.97004 1.20353 0.93255 1.01871 0.97989 1.18767 0.89807 0.94942 0.97432 1.42670 1.21715 1.36548 1.16600 0.72433 1.23705 1.02230 1.01252 0.79757 1.21665 0.87563 0.88147 0.96921 0.88247 1.42782 1.51650 1.35253 1.08186 1.19069 1.19959 1.08755 0.87336 0.90641 1.25231 1.01926 0.99665 0.97485 1.69819 1.44879 1.27400 1.20499 0.85771 0.80220 0.77650 0.80189 1.20036 1.22946 1.19688 0.90612 0.91552 0.94967 0.93357 0.89553 0.82275 0.83558 0.81961 0.82417 0.87430 0.91498 0.80457 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.81 71.98 0.63 -2.57 16 2 C -0.10 -2.21 3.41 -9.60 -0.03 -2.25 16 3 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.11 2.86 6.46 86.73 0.56 3.42 16 5 N -0.60 -17.61 3.32 -815.61 -2.71 -20.32 16 6 C 0.59 19.72 7.81 86.56 0.68 20.40 16 7 O -0.57 -22.10 17.19 -4.19 -0.07 -22.17 16 8 C 0.02 0.45 6.75 39.91 0.27 0.72 16 9 C -0.12 -3.34 10.54 22.55 0.24 -3.10 16 10 C -0.13 -3.29 6.16 -21.36 -0.13 -3.42 16 11 C -0.06 -1.26 9.81 22.33 0.22 -1.04 16 12 C -0.07 -1.34 6.28 22.06 0.14 -1.20 16 13 Cl -0.07 -1.26 28.93 -2.72 -0.08 -1.34 16 14 C -0.08 -1.42 9.79 22.32 0.22 -1.20 16 15 C -0.11 -2.21 10.07 22.37 0.23 -1.98 16 16 C 0.10 2.51 7.25 39.13 0.28 2.79 16 17 N -0.57 -14.37 5.42 -177.17 -0.96 -15.33 16 18 H 0.43 9.36 5.25 -92.70 -0.49 8.87 16 19 C 0.06 1.44 4.94 86.93 0.43 1.87 16 20 C 0.17 4.83 3.47 46.46 0.16 5.00 16 21 H 0.10 2.69 8.09 -2.39 -0.02 2.67 16 22 N -0.74 -29.92 4.38 -316.01 -1.38 -31.30 16 23 C -0.22 -11.18 10.44 84.04 0.88 -10.31 16 24 H 0.08 4.06 8.06 -2.91 -0.02 4.04 16 25 C -0.05 -2.83 5.50 84.86 0.47 -2.37 16 26 N -0.98 -59.67 13.97 21.65 0.30 -59.36 16 27 Si 0.93 45.13 27.74 68.60 1.90 47.03 16 28 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 29 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 30 H -0.27 -12.63 6.52 99.48 0.65 -11.98 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.03 0.96 6.36 -2.39 -0.02 0.94 16 34 H 0.05 1.47 7.82 -2.39 -0.02 1.45 16 35 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.16 4.28 8.06 -2.91 -0.02 4.25 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.11 1.89 7.82 -2.39 -0.02 1.87 16 41 H 0.07 2.01 6.18 -2.39 -0.01 2.00 16 42 H 0.36 15.33 4.20 -92.70 -0.39 14.94 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -69.78 366.07 2.37 -67.41 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.13 Total: 30.63 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.23 Total: 4.76 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -4.75 Total: -126.32 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.07 Total: -22.17 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -69.78 2.37 -67.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054962372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.406 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds