Wall clock time and date at job start Wed Apr 1 2020 04:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29431 * 124.80177 * 2 1 4 4 C 1.30937 * 117.36780 * 179.97438 * 3 2 1 5 5 C 1.35666 * 114.18862 * 0.02562 * 4 3 2 6 6 C 1.46683 * 126.13311 * 179.97438 * 5 4 3 7 7 O 1.21690 * 119.99879 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00522 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00062 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46737 * 179.97438 * 9 8 6 11 11 C 1.40068 * 126.12929 * 259.99749 * 10 9 8 12 12 N 1.31011 * 108.25759 * 180.02562 * 11 10 9 13 13 N 1.39748 * 108.17485 * 0.16456 * 12 11 10 14 14 C 1.34650 * 126.12034 * 80.00532 * 10 9 8 15 15 C 1.51036 * 127.90845 * 359.69763 * 14 10 9 16 16 N 1.47505 * 106.99288 * 169.43205 * 15 14 10 17 17 C 1.36937 * 121.01584 * 222.93954 * 16 15 14 18 18 H 1.07997 * 119.99940 * 333.05866 * 17 16 15 19 19 C 1.38805 * 119.99857 * 152.77611 * 17 16 15 20 20 N 1.31618 * 120.00311 * 341.13909 * 19 17 16 21 21 Si 1.86806 * 119.99761 * 161.13561 * 19 17 16 22 22 H 1.48504 * 109.46692 * 94.14801 * 21 19 17 23 23 H 1.48498 * 109.47130 * 214.14770 * 21 19 17 24 24 H 1.48498 * 109.47090 * 334.15049 * 21 19 17 25 25 C 1.47086 * 117.97007 * 43.21838 * 16 15 14 26 26 C 1.46555 * 127.31844 * 179.45356 * 13 12 11 27 27 S 1.70949 * 124.80977 * 180.31316 * 2 1 3 28 28 H 1.08994 * 109.47310 * 89.97964 * 1 2 3 29 29 H 1.09004 * 109.46904 * 209.97865 * 1 2 3 30 30 H 1.09001 * 109.47292 * 329.97299 * 1 2 3 31 31 H 1.08003 * 122.90982 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99406 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.47249 * 60.00517 * 9 8 6 34 34 H 1.08997 * 109.47310 * 300.00178 * 9 8 6 35 35 H 1.08001 * 125.87268 * 0.07981 * 11 10 9 36 36 H 1.08994 * 109.94740 * 50.06560 * 15 14 10 37 37 H 1.09000 * 109.94975 * 288.80265 * 15 14 10 38 38 H 0.97002 * 120.00038 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.51960 * 56.06012 * 25 16 15 40 40 H 1.09007 * 109.51167 * 176.21192 * 25 16 15 41 41 H 1.08998 * 109.50613 * 281.49496 * 26 13 12 42 42 H 1.08996 * 109.51311 * 41.63119 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8934 0.0005 5 6 3.9352 -0.4057 0.0004 6 6 5.3189 -0.8924 0.0004 7 8 6.2425 -0.1001 0.0009 8 7 5.5674 -2.2170 0.0009 9 6 6.9494 -2.7030 0.0014 10 6 6.9519 -4.2100 0.0024 11 6 7.1496 -5.0348 1.1172 12 7 7.0824 -6.2821 0.7220 13 7 6.8440 -6.2908 -0.6550 14 6 6.7646 -5.0048 -1.0682 15 6 6.5059 -4.5907 -2.4974 16 7 6.6271 -5.8046 -3.3267 17 6 7.2895 -5.7773 -4.5249 18 1 7.3517 -4.8571 -5.0867 19 6 7.8861 -6.9310 -5.0144 20 7 8.1465 -7.9331 -4.2017 21 14 8.3192 -7.0616 -6.8269 22 1 9.7313 -6.6488 -7.0293 23 1 8.1445 -8.4657 -7.2777 24 1 7.4263 -6.1740 -7.6144 25 6 6.0094 -7.0437 -2.8302 26 6 6.7057 -7.4618 -1.5253 27 16 2.4829 -1.4036 -0.0077 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5143 31 1 4.2432 1.7166 0.0010 32 1 4.8311 -2.8486 0.0016 33 1 7.4624 -2.3386 0.8915 34 1 7.4629 -2.3390 -0.8885 35 1 7.3261 -4.7001 2.1287 36 1 7.2437 -3.8518 -2.8098 37 1 5.5017 -4.1767 -2.5887 38 1 8.5638 -8.7392 -4.5439 39 1 4.9501 -6.8716 -2.6398 40 1 6.1228 -7.8310 -3.5756 41 1 7.6926 -7.8651 -1.7523 42 1 6.1084 -8.2215 -1.0213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069855666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:34 Heat of formation + Delta-G solvation = 113.934496 kcal Electronic energy + Delta-G solvation = -27427.540616 eV Core-core repulsion = 23537.013840 eV Total energy + Delta-G solvation = -3890.526776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02357 -40.27048 -39.08603 -36.33250 -34.98395 -32.74214 -32.51070 -31.90128 -30.08420 -29.44918 -28.44806 -26.17138 -25.18796 -24.31762 -23.35818 -21.96969 -21.63282 -20.33838 -19.68702 -18.64512 -18.32464 -17.15670 -16.77505 -16.02457 -15.74483 -15.57275 -15.25779 -14.94722 -14.83111 -14.55177 -14.07992 -13.84695 -13.71970 -13.65118 -13.53214 -13.24598 -12.96751 -12.77504 -12.59946 -12.55196 -11.83269 -11.74235 -11.58589 -11.41688 -11.06542 -10.92666 -10.53103 -10.38245 -10.24562 -10.19797 -10.08607 -9.95399 -9.77993 -9.21683 -8.99875 -8.82336 -8.61317 -8.01038 -7.06513 -6.10085 -3.54090 -0.00548 0.88605 1.30359 2.24459 2.38530 2.80618 3.09624 3.10458 3.24084 3.32468 3.34656 3.49973 3.79373 4.27142 4.62169 4.73332 4.98088 5.00144 5.02886 5.07655 5.08981 5.11925 5.24448 5.39408 5.44787 5.67023 5.73169 5.83245 5.92650 5.99114 6.11395 6.16808 6.21594 6.38500 6.45601 6.55950 6.90262 6.99868 7.06822 7.29889 7.45764 7.55249 7.61803 8.07147 8.07461 8.25862 8.85801 9.46810 10.01767 10.99377 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.002809 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.264098 B = 9964.087569 C =10730.562686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.055 3.945 3 N -0.481 5.481 4 C 0.118 3.882 5 C -0.289 4.289 6 C 0.593 3.407 7 O -0.530 6.530 8 N -0.713 5.713 9 C 0.211 3.789 10 C -0.294 4.294 11 C 0.051 3.949 12 N -0.311 5.311 13 N -0.340 5.340 14 C 0.118 3.882 15 C 0.195 3.805 16 N -0.593 5.593 17 C -0.260 4.260 18 H 0.074 0.926 19 C 0.008 3.992 20 N -0.901 5.901 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.153 3.847 26 C 0.115 3.885 27 S 0.169 5.831 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.189 0.811 32 H 0.398 0.602 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.259 0.741 39 H 0.017 0.983 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.600 9.772 9.253 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.220 4.220 3 N -0.196 5.196 4 C -0.040 4.040 5 C -0.413 4.413 6 C 0.378 3.622 7 O -0.408 6.408 8 N -0.364 5.364 9 C 0.088 3.912 10 C -0.307 4.307 11 C -0.135 4.135 12 N -0.132 5.132 13 N -0.120 5.120 14 C -0.015 4.015 15 C 0.068 3.932 16 N -0.315 5.315 17 C -0.389 4.389 18 H 0.092 0.908 19 C -0.192 4.192 20 N -0.545 5.545 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.213 1.213 24 H -0.202 1.202 25 C 0.026 3.974 26 C -0.007 4.007 27 S 0.425 5.575 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.205 0.795 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.192 0.808 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.280 8.146 9.443 18.218 hybrid contribution 0.718 0.915 -0.947 1.500 sum -12.562 9.061 8.497 17.666 Atomic orbital electron populations 1.20536 0.84719 1.04594 1.04364 1.27495 1.02266 0.91182 1.01042 1.66231 1.04855 1.31212 1.17277 1.22181 0.90681 0.95576 0.95514 1.25853 0.98132 0.97802 1.19510 1.16712 0.85818 0.82773 0.76937 1.90843 1.44197 1.55254 1.50540 1.46236 1.10211 1.05722 1.74253 1.19378 0.80968 0.88372 1.02474 1.19378 1.23370 0.94845 0.93062 1.23636 1.00753 0.90113 0.99028 1.77226 1.24046 1.20869 0.91053 1.48825 1.51923 1.06239 1.05026 1.21922 0.96577 0.85244 0.97798 1.20148 0.99429 0.91493 0.82178 1.44271 1.62296 1.04512 1.20446 1.19191 1.28508 0.97185 0.94024 0.90842 1.25054 0.97398 0.97919 0.98790 1.69931 1.44079 1.06997 1.33463 0.86172 0.78383 0.77216 0.84359 1.21235 1.21344 1.20170 1.21274 0.91277 0.91837 0.93012 1.22799 1.04788 0.83713 0.89386 1.84052 0.96609 1.11235 1.65614 0.89045 0.89719 0.88906 0.79457 0.76776 0.90739 0.90713 0.80818 0.89932 0.93341 0.93148 0.96473 0.86716 0.87619 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.46 36.01 0.38 -0.05 16 2 C 0.05 0.49 7.39 -13.29 -0.10 0.40 16 3 N -0.48 -5.39 10.51 -11.50 -0.12 -5.51 16 4 C 0.12 1.37 11.09 -18.85 -0.21 1.16 16 5 C -0.29 -3.42 6.48 -37.09 -0.24 -3.66 16 6 C 0.59 8.21 7.79 -12.85 -0.10 8.11 16 7 O -0.53 -8.88 16.87 5.20 0.09 -8.79 16 8 N -0.71 -9.22 5.54 -62.80 -0.35 -9.57 16 9 C 0.21 2.98 5.95 -5.19 -0.03 2.95 16 10 C -0.29 -4.76 5.46 -105.20 -0.57 -5.34 16 11 C 0.05 0.82 11.97 -17.22 -0.21 0.62 16 12 N -0.31 -5.99 12.61 30.70 0.39 -5.60 16 13 N -0.34 -6.88 4.03 -56.70 -0.23 -7.11 16 14 C 0.12 2.24 6.71 -82.17 -0.55 1.69 16 15 C 0.19 3.79 6.66 -4.48 -0.03 3.76 16 16 N -0.59 -13.52 2.99 -172.69 -0.52 -14.04 16 17 C -0.26 -6.53 9.66 -15.06 -0.15 -6.67 16 18 H 0.07 1.82 7.90 -52.49 -0.41 1.40 16 19 C 0.01 0.19 4.90 -17.43 -0.09 0.11 16 20 N -0.90 -23.35 10.26 55.49 0.57 -22.78 16 21 Si 0.91 20.15 29.60 -169.99 -5.03 15.12 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.15 3.25 5.58 -3.36 -0.02 3.24 16 26 C 0.12 2.35 7.36 -3.65 -0.03 2.33 16 27 S 0.17 1.54 22.31 -107.50 -2.40 -0.86 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.19 1.99 8.06 -52.48 -0.42 1.57 16 32 H 0.40 4.73 7.65 -40.82 -0.31 4.41 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.08 1.61 8.01 -51.93 -0.42 1.20 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.12 2.66 5.93 -51.93 -0.31 2.35 16 41 H 0.11 2.46 7.21 -51.93 -0.37 2.09 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -30.22 369.76 -9.15 -39.37 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.19 Total: 5.58 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -1.94 Total: 8.62 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.26 Total: -64.60 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.40 Total: -0.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.22 -9.15 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069855666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.306 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds