Wall clock time and date at job start Wed Apr 1 2020 04:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29431 * 124.80177 * 2 1 4 4 C 1.30937 * 117.36780 * 179.97438 * 3 2 1 5 5 C 1.35666 * 114.18862 * 0.02562 * 4 3 2 6 6 C 1.46683 * 126.13311 * 179.97438 * 5 4 3 7 7 O 1.21690 * 119.99879 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00522 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00062 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46737 * 179.97438 * 9 8 6 11 11 C 1.40068 * 126.12929 * 259.99749 * 10 9 8 12 12 N 1.31011 * 108.25759 * 180.02562 * 11 10 9 13 13 N 1.39748 * 108.17485 * 0.16456 * 12 11 10 14 14 C 1.34650 * 126.12034 * 80.00532 * 10 9 8 15 15 C 1.51036 * 127.90845 * 359.69763 * 14 10 9 16 16 N 1.47505 * 106.99288 * 169.43205 * 15 14 10 17 17 C 1.36937 * 121.01584 * 222.93954 * 16 15 14 18 18 H 1.07997 * 119.99940 * 333.05866 * 17 16 15 19 19 C 1.38805 * 119.99857 * 152.77611 * 17 16 15 20 20 N 1.31618 * 120.00311 * 341.13909 * 19 17 16 21 21 Si 1.86806 * 119.99761 * 161.13561 * 19 17 16 22 22 H 1.48504 * 109.46692 * 94.14801 * 21 19 17 23 23 H 1.48498 * 109.47130 * 214.14770 * 21 19 17 24 24 H 1.48498 * 109.47090 * 334.15049 * 21 19 17 25 25 C 1.47086 * 117.97007 * 43.21838 * 16 15 14 26 26 C 1.46555 * 127.31844 * 179.45356 * 13 12 11 27 27 S 1.70949 * 124.80977 * 180.31316 * 2 1 3 28 28 H 1.08994 * 109.47310 * 89.97964 * 1 2 3 29 29 H 1.09004 * 109.46904 * 209.97865 * 1 2 3 30 30 H 1.09001 * 109.47292 * 329.97299 * 1 2 3 31 31 H 1.08003 * 122.90982 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99406 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.47249 * 60.00517 * 9 8 6 34 34 H 1.08997 * 109.47310 * 300.00178 * 9 8 6 35 35 H 1.08001 * 125.87268 * 0.07981 * 11 10 9 36 36 H 1.08994 * 109.94740 * 50.06560 * 15 14 10 37 37 H 1.09000 * 109.94975 * 288.80265 * 15 14 10 38 38 H 0.97002 * 120.00038 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.51960 * 56.06012 * 25 16 15 40 40 H 1.09007 * 109.51167 * 176.21192 * 25 16 15 41 41 H 1.08998 * 109.50613 * 281.49496 * 26 13 12 42 42 H 1.08996 * 109.51311 * 41.63119 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8934 0.0005 5 6 3.9352 -0.4057 0.0004 6 6 5.3189 -0.8924 0.0004 7 8 6.2425 -0.1001 0.0009 8 7 5.5674 -2.2170 0.0009 9 6 6.9494 -2.7030 0.0014 10 6 6.9519 -4.2100 0.0024 11 6 7.1496 -5.0348 1.1172 12 7 7.0824 -6.2821 0.7220 13 7 6.8440 -6.2908 -0.6550 14 6 6.7646 -5.0048 -1.0682 15 6 6.5059 -4.5907 -2.4974 16 7 6.6271 -5.8046 -3.3267 17 6 7.2895 -5.7773 -4.5249 18 1 7.3517 -4.8571 -5.0867 19 6 7.8861 -6.9310 -5.0144 20 7 8.1465 -7.9331 -4.2017 21 14 8.3192 -7.0616 -6.8269 22 1 9.7313 -6.6488 -7.0293 23 1 8.1445 -8.4657 -7.2777 24 1 7.4263 -6.1740 -7.6144 25 6 6.0094 -7.0437 -2.8302 26 6 6.7057 -7.4618 -1.5253 27 16 2.4829 -1.4036 -0.0077 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5143 31 1 4.2432 1.7166 0.0010 32 1 4.8311 -2.8486 0.0016 33 1 7.4624 -2.3386 0.8915 34 1 7.4629 -2.3390 -0.8885 35 1 7.3261 -4.7001 2.1287 36 1 7.2437 -3.8518 -2.8098 37 1 5.5017 -4.1767 -2.5887 38 1 8.5638 -8.7392 -4.5439 39 1 4.9501 -6.8716 -2.6398 40 1 6.1228 -7.8310 -3.5756 41 1 7.6926 -7.8651 -1.7523 42 1 6.1084 -8.2215 -1.0213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069855666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:33 Heat of formation + Delta-G solvation = 93.988082 kcal Electronic energy + Delta-G solvation = -27428.405558 eV Core-core repulsion = 23537.013840 eV Total energy + Delta-G solvation = -3891.391718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.43791 -41.17803 -40.09054 -37.99230 -36.18461 -34.26991 -33.62055 -33.17147 -31.58956 -30.68194 -29.50879 -27.76903 -26.46794 -25.24374 -24.90578 -23.46085 -22.71252 -21.68104 -20.74874 -19.82335 -19.43292 -18.69934 -17.99898 -17.23200 -17.09411 -16.87321 -16.55491 -16.33038 -15.76412 -15.70569 -15.48486 -15.24795 -15.04706 -14.89802 -14.68698 -14.44398 -14.09567 -13.95626 -13.45602 -13.37216 -13.21928 -13.07422 -13.01268 -12.75568 -12.65764 -12.61677 -12.24067 -12.01785 -11.87774 -11.63354 -11.39827 -10.79367 -10.67980 -10.60792 -10.17270 -10.12047 -9.88443 -9.42451 -8.86375 -7.99678 -5.45746 -0.80939 0.13390 0.52617 0.94689 1.37674 1.46675 1.50496 1.56939 1.59259 1.65469 2.10877 2.36287 2.46367 3.12151 3.19057 3.42193 3.64131 3.76481 3.78215 3.99309 4.12521 4.24061 4.27165 4.36489 4.43322 4.51433 4.62820 4.63507 4.68169 4.68415 4.80327 4.95510 4.99926 5.15375 5.17767 5.22198 5.28839 5.31902 5.60805 5.77315 6.11033 6.24019 6.36384 6.57015 6.84842 6.99614 7.02281 7.62902 8.16531 9.07308 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.002809 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.264098 B = 9964.087569 C =10730.562686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.062 3.938 3 N -0.506 5.506 4 C 0.118 3.882 5 C -0.319 4.319 6 C 0.597 3.403 7 O -0.566 6.566 8 N -0.706 5.706 9 C 0.217 3.783 10 C -0.275 4.275 11 C 0.062 3.938 12 N -0.336 5.336 13 N -0.360 5.360 14 C 0.099 3.901 15 C 0.198 3.802 16 N -0.610 5.610 17 C -0.272 4.272 18 H 0.071 0.929 19 C -0.035 4.035 20 N -0.921 5.921 21 Si 0.967 3.033 22 H -0.291 1.291 23 H -0.290 1.290 24 H -0.270 1.270 25 C 0.159 3.841 26 C 0.127 3.873 27 S 0.207 5.793 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.187 0.813 32 H 0.405 0.595 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.214 0.786 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.254 0.746 39 H 0.037 0.963 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 10.521 10.147 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.212 4.212 3 N -0.222 5.222 4 C -0.040 4.040 5 C -0.443 4.443 6 C 0.383 3.617 7 O -0.447 6.447 8 N -0.356 5.356 9 C 0.094 3.906 10 C -0.287 4.287 11 C -0.124 4.124 12 N -0.156 5.156 13 N -0.140 5.140 14 C -0.034 4.034 15 C 0.071 3.929 16 N -0.333 5.333 17 C -0.401 4.401 18 H 0.089 0.911 19 C -0.232 4.232 20 N -0.566 5.566 21 Si 0.795 3.205 22 H -0.219 1.219 23 H -0.216 1.216 24 H -0.195 1.195 25 C 0.032 3.968 26 C 0.004 3.996 27 S 0.463 5.537 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.204 0.796 32 H 0.240 0.760 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.231 0.769 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.202 8.889 10.346 20.425 hybrid contribution 1.207 0.765 -1.147 1.833 sum -13.995 9.655 9.198 19.331 Atomic orbital electron populations 1.20790 0.81953 1.06061 1.05711 1.28226 1.03835 0.90718 0.98412 1.66307 1.04693 1.32238 1.18940 1.22285 0.91184 0.95710 0.94842 1.25655 0.98217 0.98630 1.21783 1.16895 0.86350 0.82488 0.75999 1.90818 1.45569 1.56027 1.52282 1.46059 1.09897 1.05699 1.73979 1.19289 0.81717 0.86873 1.02719 1.19513 1.21409 0.95567 0.92251 1.24292 0.98529 0.88985 1.00556 1.77216 1.25271 1.22581 0.90563 1.48792 1.53493 1.06240 1.05496 1.21973 0.97943 0.85454 0.98011 1.20161 1.00255 0.90172 0.82269 1.44442 1.62407 1.05835 1.20596 1.19414 1.28346 0.97160 0.95188 0.91078 1.25685 0.97873 0.97886 1.01788 1.70065 1.44859 1.07154 1.34476 0.85283 0.77616 0.76863 0.80707 1.21851 1.21567 1.19497 1.21169 0.92198 0.90750 0.92727 1.22449 1.02983 0.84499 0.89636 1.83866 0.94701 1.10210 1.64899 0.87534 0.87441 0.88237 0.79575 0.75977 0.89368 0.91743 0.76938 0.90539 0.91371 0.93626 0.94545 0.89002 0.91125 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.46 71.24 0.75 0.13 16 2 C 0.06 0.97 7.39 88.46 0.65 1.63 16 3 N -0.51 -10.64 10.51 -190.30 -2.00 -12.64 16 4 C 0.12 2.67 11.09 84.23 0.93 3.60 16 5 C -0.32 -7.20 6.48 23.88 0.15 -7.04 16 6 C 0.60 15.99 7.79 86.45 0.67 16.66 16 7 O -0.57 -18.86 16.87 -4.32 -0.07 -18.93 16 8 N -0.71 -17.09 5.54 -470.82 -2.61 -19.70 16 9 C 0.22 5.77 5.95 85.63 0.51 6.28 16 10 C -0.27 -8.39 5.46 -20.24 -0.11 -8.50 16 11 C 0.06 1.86 11.97 85.26 1.02 2.88 16 12 N -0.34 -12.41 12.61 -56.80 -0.72 -13.13 16 13 N -0.36 -14.31 4.03 -333.29 -1.34 -15.65 16 14 C 0.10 3.63 6.71 41.31 0.28 3.91 16 15 C 0.20 7.59 6.66 85.55 0.57 8.16 16 16 N -0.61 -27.89 2.99 -700.27 -2.09 -29.98 16 17 C -0.27 -13.73 9.66 84.03 0.81 -12.92 16 18 H 0.07 3.54 7.90 -2.91 -0.02 3.52 16 19 C -0.04 -1.80 4.90 84.86 0.42 -1.39 16 20 N -0.92 -48.79 10.26 21.65 0.22 -48.57 16 21 Si 0.97 41.83 29.60 68.60 2.03 43.86 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 C 0.16 6.76 5.58 86.51 0.48 7.25 16 26 C 0.13 5.23 7.36 86.61 0.64 5.87 16 27 S 0.21 3.29 22.31 -56.49 -1.26 2.03 16 28 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.40 8.75 7.65 -92.71 -0.71 8.04 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.21 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.08 2.98 8.01 -2.39 -0.02 2.96 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 4.35 5.93 -2.38 -0.01 4.33 16 41 H 0.07 3.40 7.21 -2.39 -0.02 3.38 16 42 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -65.61 369.76 0.30 -65.31 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.37 Total: 20.91 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 7.78 Total: 26.49 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -8.54 Total: -139.68 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.07 Total: -18.93 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.26 Total: 2.03 kcal Total: -65.61 0.30 -65.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069855666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.303 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds