Wall clock time and date at job start Wed Apr 1 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33811 * 124.52448 * 2 1 4 4 C 1.37475 * 115.10553 * 180.02562 * 3 2 1 5 5 C 1.36646 * 113.28960 * 0.02562 * 4 3 2 6 6 C 1.46586 * 125.45627 * 180.02562 * 5 4 3 7 7 O 1.21704 * 119.99713 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00313 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99871 * 179.97438 * 8 6 5 10 10 H 1.08993 * 110.78380 * 36.78363 * 9 8 6 11 11 C 1.54327 * 110.72108 * 273.54072 * 9 8 6 12 12 N 1.47022 * 107.27336 * 219.44674 * 11 9 8 13 13 C 1.36936 * 125.64736 * 178.97248 * 12 11 9 14 14 H 1.07994 * 119.99970 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99724 * 359.97438 * 13 12 11 16 16 N 1.31612 * 120.00298 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99602 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47193 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46920 * 119.99583 * 17 15 13 20 20 H 1.48505 * 109.47294 * 239.99760 * 17 15 13 21 21 C 1.47425 * 108.70334 * 358.94217 * 12 11 9 22 22 C 1.54915 * 104.83334 * 24.12789 * 21 12 11 23 23 H 1.08995 * 111.00392 * 204.91661 * 22 21 12 24 24 N 1.46503 * 111.00354 * 81.06431 * 22 21 12 25 25 C 1.35309 * 125.86846 * 332.80580 * 24 22 21 26 26 C 1.35347 * 106.17626 * 180.02562 * 25 24 22 27 27 N 1.33771 * 106.49521 * 359.97438 * 26 25 24 28 28 N 1.28635 * 108.88592 * 359.73860 * 27 26 25 29 29 S 1.70616 * 124.52110 * 180.34895 * 2 1 3 30 30 H 1.09003 * 109.46970 * 89.99835 * 1 2 3 31 31 H 1.08999 * 109.47649 * 210.00307 * 1 2 3 32 32 H 1.09001 * 109.47173 * 330.00416 * 1 2 3 33 33 H 1.08004 * 122.44862 * 0.02562 * 3 2 1 34 34 H 1.07995 * 123.35395 * 179.97438 * 4 3 2 35 35 H 0.96996 * 119.99898 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.87800 * 338.86858 * 11 9 8 37 37 H 1.08998 * 109.87662 * 100.02644 * 11 9 8 38 38 H 0.97002 * 120.00251 * 180.02562 * 16 15 13 39 39 H 1.08997 * 110.36855 * 142.96531 * 21 12 11 40 40 H 1.08999 * 110.36490 * 265.17846 * 21 12 11 41 41 H 1.08007 * 126.91505 * 0.02562 * 25 24 22 42 42 H 1.07997 * 126.75436 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8775 -0.0006 5 6 3.9492 -0.4491 -0.0016 6 6 5.3122 -0.9884 -0.0018 7 8 6.2658 -0.2322 -0.0016 8 7 5.5095 -2.3217 -0.0023 9 6 6.8718 -2.8605 -0.0031 10 1 7.5319 -2.2441 0.6069 11 6 7.4117 -2.9780 -1.4441 12 7 8.1713 -4.2342 -1.5247 13 6 8.7958 -4.7189 -2.6428 14 1 9.3312 -5.6558 -2.5989 15 6 8.7409 -4.0059 -3.8325 16 7 8.0880 -2.8644 -3.8861 17 14 9.5935 -4.6667 -5.3576 18 1 10.2529 -5.9578 -5.0358 19 1 8.5913 -4.8768 -6.4331 20 1 10.6146 -3.6907 -5.8160 21 6 8.1498 -4.8853 -0.2021 22 6 6.8807 -4.3309 0.4922 23 1 6.9771 -4.3772 1.5769 24 7 5.6824 -5.0438 0.0428 25 6 5.5252 -5.6539 -1.1547 26 6 4.2783 -6.1802 -1.1490 27 7 3.7409 -5.8708 0.0363 28 7 4.6002 -5.2024 0.7214 29 16 2.4739 -1.4057 -0.0086 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.8429 2.0964 0.0004 34 1 4.3550 1.6702 -0.0010 35 1 4.7495 -2.9244 -0.0022 36 1 6.5816 -3.0007 -2.1502 37 1 8.0657 -2.1345 -1.6648 38 1 8.0493 -2.3663 -4.7176 39 1 8.0794 -5.9673 -0.3130 40 1 9.0415 -4.6201 0.3658 41 1 6.2492 -5.7098 -1.9543 42 1 3.8094 -6.7398 -1.9448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069891364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:04 Heat of formation + Delta-G solvation = 137.821151 kcal Electronic energy + Delta-G solvation = -28667.170749 eV Core-core repulsion = 24777.679776 eV Total energy + Delta-G solvation = -3889.490973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.95286 -39.72138 -38.23036 -37.40230 -34.21948 -33.44847 -32.18254 -31.72421 -30.54565 -29.13499 -27.98921 -26.84253 -24.91373 -23.66735 -22.72310 -22.21199 -21.66347 -20.34700 -20.04304 -19.26117 -18.01041 -17.56216 -17.00141 -16.24917 -15.67597 -15.49367 -15.11011 -14.77418 -14.48882 -14.41947 -14.15933 -13.93855 -13.76580 -13.50976 -13.25551 -13.02147 -12.61871 -12.39037 -12.37134 -12.13608 -11.94583 -11.78321 -11.39366 -11.34364 -11.12498 -10.91654 -10.86209 -10.66372 -10.54755 -10.21886 -10.02112 -9.88582 -9.75735 -8.96313 -8.91106 -8.81355 -8.64244 -8.60078 -7.15915 -5.92247 -3.32121 0.49434 1.42051 1.84681 1.99127 2.37307 2.62452 2.93141 3.26023 3.29053 3.34717 3.37546 3.38972 4.28685 4.48897 4.61692 4.71681 4.92329 4.96983 5.01427 5.07020 5.24616 5.26820 5.30686 5.41948 5.47373 5.59783 5.69053 5.71040 5.76298 5.81831 5.92191 6.04597 6.10899 6.13605 6.17769 6.31464 6.47326 6.54088 7.03786 7.26799 7.31891 7.59970 7.62887 7.96176 8.33516 8.85536 8.94478 9.54750 10.13957 11.17571 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.003924 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.925437 B = 7134.701518 C = 8106.405904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.202 4.202 3 C -0.157 4.157 4 C -0.054 4.054 5 C -0.264 4.264 6 C 0.593 3.407 7 O -0.523 6.523 8 N -0.713 5.713 9 C 0.112 3.888 10 H 0.113 0.887 11 C 0.168 3.832 12 N -0.601 5.601 13 C -0.246 4.246 14 H 0.084 0.916 15 C 0.003 3.997 16 N -0.911 5.911 17 Si 0.914 3.086 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.129 3.871 22 C 0.113 3.887 23 H 0.121 0.879 24 N -0.278 5.278 25 C -0.004 4.004 26 C -0.076 4.076 27 N -0.275 5.275 28 N -0.112 5.112 29 S 0.209 5.791 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.396 0.604 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.256 0.744 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.204 0.796 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 1.933 8.204 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.322 4.322 3 C -0.188 4.188 4 C -0.087 4.087 5 C -0.384 4.384 6 C 0.379 3.621 7 O -0.401 6.401 8 N -0.365 5.365 9 C 0.005 3.995 10 H 0.131 0.869 11 C 0.043 3.957 12 N -0.329 5.329 13 C -0.373 4.373 14 H 0.102 0.898 15 C -0.195 4.195 16 N -0.556 5.556 17 Si 0.744 3.256 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.216 1.216 21 C 0.001 3.999 22 C 0.009 3.991 23 H 0.139 0.861 24 N -0.071 5.071 25 C -0.156 4.156 26 C -0.232 4.232 27 N -0.142 5.142 28 N -0.091 5.091 29 S 0.477 5.523 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.232 0.768 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.221 0.779 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.876 1.277 9.306 15.142 hybrid contribution 1.047 0.914 -1.961 2.404 sum -10.829 2.191 7.345 13.267 Atomic orbital electron populations 1.20384 0.87469 1.03388 1.03064 1.24276 1.01574 0.98032 1.08273 1.19931 0.92601 0.99462 1.06772 1.20728 0.96159 0.95110 0.96732 1.24632 0.96960 0.98155 1.18694 1.16868 0.86802 0.82127 0.76315 1.90836 1.41635 1.57825 1.49788 1.45727 1.08879 1.06448 1.75438 1.22896 0.83619 0.90869 1.02111 0.86922 1.21649 0.96187 0.89709 0.88190 1.44490 1.62116 1.21283 1.05037 1.19034 1.27687 1.04583 0.86044 0.89809 1.24856 0.99825 0.96736 0.98078 1.69953 1.44784 1.14652 1.26241 0.86035 0.78792 0.78020 0.82773 1.20337 1.21556 1.21572 1.21935 0.91772 0.97597 0.88627 1.23362 0.82995 0.92067 1.00665 0.86147 1.47275 1.12765 1.35463 1.11625 1.24211 1.00813 0.98798 0.91762 1.23553 0.93980 1.07516 0.98186 1.75003 1.22993 1.11745 1.04413 1.78219 0.91237 1.18631 1.20972 1.83363 0.94287 1.07030 1.67614 0.90419 0.91051 0.90375 0.83932 0.82921 0.76776 0.92351 0.92073 0.93325 0.92184 0.92740 0.77900 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.31 36.00 0.37 -0.29 16 2 C -0.20 -2.26 6.28 -35.86 -0.23 -2.49 16 3 C -0.16 -1.79 9.99 -41.41 -0.41 -2.21 16 4 C -0.05 -0.75 10.01 -40.43 -0.40 -1.16 16 5 C -0.26 -4.18 6.45 -36.79 -0.24 -4.42 16 6 C 0.59 11.06 7.78 -12.89 -0.10 10.96 16 7 O -0.52 -11.21 16.57 5.19 0.09 -11.12 16 8 N -0.71 -12.71 5.07 -53.36 -0.27 -12.98 16 9 C 0.11 2.02 3.10 -66.09 -0.21 1.81 16 10 H 0.11 2.00 7.70 -51.93 -0.40 1.60 16 11 C 0.17 3.76 4.75 -3.06 -0.01 3.74 16 12 N -0.60 -13.06 2.23 -170.07 -0.38 -13.44 16 13 C -0.25 -5.98 10.07 -15.06 -0.15 -6.14 16 14 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 15 C 0.00 0.08 5.49 -17.43 -0.10 -0.01 16 16 N -0.91 -25.02 10.31 55.49 0.57 -24.45 16 17 Si 0.91 20.51 29.55 -169.99 -5.02 15.49 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.13 2.17 6.21 -2.53 -0.02 2.16 16 22 C 0.11 1.77 4.06 -65.77 -0.27 1.51 16 23 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 24 N -0.28 -4.60 2.45 -52.67 -0.13 -4.73 16 25 C 0.00 -0.07 10.01 -17.05 -0.17 -0.24 16 26 C -0.08 -1.18 12.05 -17.74 -0.21 -1.40 16 27 N -0.28 -4.71 12.41 30.23 0.38 -4.33 16 28 N -0.11 -1.91 12.21 60.35 0.74 -1.17 16 29 S 0.21 2.79 22.10 -107.50 -2.38 0.41 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 34 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.40 6.87 5.84 -40.82 -0.24 6.63 16 36 H 0.06 1.48 7.27 -51.93 -0.38 1.11 16 37 H 0.06 1.61 7.51 -51.93 -0.39 1.22 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.06 0.98 7.86 -51.93 -0.41 0.57 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.20 3.76 6.81 -52.48 -0.36 3.40 16 42 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -30.06 364.80 -8.16 -38.22 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.10 Total: 10.78 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.14 Total: 1.82 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.90 Total: -61.10 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.38 Total: 0.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.06 -8.16 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069891364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.038 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds