Wall clock time and date at job start Wed Apr 1 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33811 * 124.52448 * 2 1 4 4 C 1.37475 * 115.10553 * 180.02562 * 3 2 1 5 5 C 1.36646 * 113.28960 * 0.02562 * 4 3 2 6 6 C 1.46586 * 125.45627 * 180.02562 * 5 4 3 7 7 O 1.21704 * 119.99713 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00313 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99871 * 179.97438 * 8 6 5 10 10 H 1.08993 * 110.78380 * 36.78363 * 9 8 6 11 11 C 1.54327 * 110.72108 * 273.54072 * 9 8 6 12 12 N 1.47022 * 107.27336 * 219.44674 * 11 9 8 13 13 C 1.36936 * 125.64736 * 178.97248 * 12 11 9 14 14 H 1.07994 * 119.99970 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99724 * 359.97438 * 13 12 11 16 16 N 1.31612 * 120.00298 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99602 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47193 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46920 * 119.99583 * 17 15 13 20 20 H 1.48505 * 109.47294 * 239.99760 * 17 15 13 21 21 C 1.47425 * 108.70334 * 358.94217 * 12 11 9 22 22 C 1.54915 * 104.83334 * 24.12789 * 21 12 11 23 23 H 1.08995 * 111.00392 * 204.91661 * 22 21 12 24 24 N 1.46503 * 111.00354 * 81.06431 * 22 21 12 25 25 C 1.35309 * 125.86846 * 332.80580 * 24 22 21 26 26 C 1.35347 * 106.17626 * 180.02562 * 25 24 22 27 27 N 1.33771 * 106.49521 * 359.97438 * 26 25 24 28 28 N 1.28635 * 108.88592 * 359.73860 * 27 26 25 29 29 S 1.70616 * 124.52110 * 180.34895 * 2 1 3 30 30 H 1.09003 * 109.46970 * 89.99835 * 1 2 3 31 31 H 1.08999 * 109.47649 * 210.00307 * 1 2 3 32 32 H 1.09001 * 109.47173 * 330.00416 * 1 2 3 33 33 H 1.08004 * 122.44862 * 0.02562 * 3 2 1 34 34 H 1.07995 * 123.35395 * 179.97438 * 4 3 2 35 35 H 0.96996 * 119.99898 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.87800 * 338.86858 * 11 9 8 37 37 H 1.08998 * 109.87662 * 100.02644 * 11 9 8 38 38 H 0.97002 * 120.00251 * 180.02562 * 16 15 13 39 39 H 1.08997 * 110.36855 * 142.96531 * 21 12 11 40 40 H 1.08999 * 110.36490 * 265.17846 * 21 12 11 41 41 H 1.08007 * 126.91505 * 0.02562 * 25 24 22 42 42 H 1.07997 * 126.75436 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8775 -0.0006 5 6 3.9492 -0.4491 -0.0016 6 6 5.3122 -0.9884 -0.0018 7 8 6.2658 -0.2322 -0.0016 8 7 5.5095 -2.3217 -0.0023 9 6 6.8718 -2.8605 -0.0031 10 1 7.5319 -2.2441 0.6069 11 6 7.4117 -2.9780 -1.4441 12 7 8.1713 -4.2342 -1.5247 13 6 8.7958 -4.7189 -2.6428 14 1 9.3312 -5.6558 -2.5989 15 6 8.7409 -4.0059 -3.8325 16 7 8.0880 -2.8644 -3.8861 17 14 9.5935 -4.6667 -5.3576 18 1 10.2529 -5.9578 -5.0358 19 1 8.5913 -4.8768 -6.4331 20 1 10.6146 -3.6907 -5.8160 21 6 8.1498 -4.8853 -0.2021 22 6 6.8807 -4.3309 0.4922 23 1 6.9771 -4.3772 1.5769 24 7 5.6824 -5.0438 0.0428 25 6 5.5252 -5.6539 -1.1547 26 6 4.2783 -6.1802 -1.1490 27 7 3.7409 -5.8708 0.0363 28 7 4.6002 -5.2024 0.7214 29 16 2.4739 -1.4057 -0.0086 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.8429 2.0964 0.0004 34 1 4.3550 1.6702 -0.0010 35 1 4.7495 -2.9244 -0.0022 36 1 6.5816 -3.0007 -2.1502 37 1 8.0657 -2.1345 -1.6648 38 1 8.0493 -2.3663 -4.7176 39 1 8.0794 -5.9673 -0.3130 40 1 9.0415 -4.6201 0.3658 41 1 6.2492 -5.7098 -1.9543 42 1 3.8094 -6.7398 -1.9448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069891364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:03 Heat of formation + Delta-G solvation = 119.122168 kcal Electronic energy + Delta-G solvation = -28667.981598 eV Core-core repulsion = 24777.679776 eV Total energy + Delta-G solvation = -3890.301822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.28009 -41.16059 -39.57100 -38.61552 -35.86336 -34.91723 -33.50120 -33.02364 -31.86678 -30.70791 -29.42762 -28.07486 -26.59250 -24.69690 -24.10117 -23.54491 -23.04250 -21.80619 -21.57371 -20.47727 -19.25216 -19.07509 -18.54324 -17.56014 -17.01917 -16.82804 -16.64323 -16.19457 -15.93413 -15.71138 -15.68126 -15.05325 -14.99516 -14.84646 -14.58188 -14.06072 -13.99751 -13.91270 -13.48676 -13.28884 -13.15192 -12.96115 -12.88054 -12.78155 -12.74351 -12.56270 -12.27584 -12.04444 -11.90467 -11.89535 -11.82542 -11.36677 -11.14563 -10.78237 -10.36235 -10.27190 -9.70244 -9.64468 -9.02328 -7.87493 -5.27203 -0.59220 0.37293 0.63879 0.83389 1.28944 1.32086 1.48217 1.50081 1.59104 1.64090 1.88008 2.05879 2.46837 3.09995 3.32268 3.37457 3.49925 3.65951 3.74465 3.82766 3.88095 4.17745 4.21183 4.22721 4.34606 4.41933 4.44660 4.65216 4.67246 4.71820 4.78902 4.82441 4.97800 5.00590 5.04667 5.13802 5.29459 5.37636 5.40791 5.46066 5.66241 5.70804 6.07221 6.17602 6.89526 7.00796 7.52969 7.67713 8.27257 9.21481 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.003924 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.925437 B = 7134.701518 C = 8106.405904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.179 4.179 3 C -0.164 4.164 4 C -0.046 4.046 5 C -0.310 4.310 6 C 0.588 3.412 7 O -0.565 6.565 8 N -0.709 5.709 9 C 0.119 3.881 10 H 0.117 0.883 11 C 0.191 3.809 12 N -0.614 5.614 13 C -0.236 4.236 14 H 0.098 0.902 15 C -0.056 4.056 16 N -0.948 5.948 17 Si 0.973 3.027 18 H -0.259 1.259 19 H -0.296 1.296 20 H -0.302 1.302 21 C 0.128 3.872 22 C 0.126 3.874 23 H 0.160 0.840 24 N -0.277 5.277 25 C -0.019 4.019 26 C -0.064 4.064 27 N -0.287 5.287 28 N -0.114 5.114 29 S 0.201 5.799 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.176 0.824 34 H 0.152 0.848 35 H 0.400 0.600 36 H 0.020 0.980 37 H 0.009 0.991 38 H 0.244 0.756 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.188 0.812 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 0.869 9.548 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.299 4.299 3 C -0.193 4.193 4 C -0.080 4.080 5 C -0.430 4.430 6 C 0.376 3.624 7 O -0.446 6.446 8 N -0.360 5.360 9 C 0.011 3.989 10 H 0.134 0.866 11 C 0.064 3.936 12 N -0.341 5.341 13 C -0.364 4.364 14 H 0.116 0.884 15 C -0.250 4.250 16 N -0.596 5.596 17 Si 0.803 3.197 18 H -0.183 1.183 19 H -0.223 1.223 20 H -0.230 1.230 21 C 0.002 3.998 22 C 0.022 3.978 23 H 0.177 0.823 24 N -0.071 5.071 25 C -0.170 4.170 26 C -0.221 4.221 27 N -0.153 5.153 28 N -0.093 5.093 29 S 0.469 5.531 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.194 0.806 34 H 0.169 0.831 35 H 0.236 0.764 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.205 0.795 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -13.750 0.151 10.694 17.420 hybrid contribution 1.525 1.259 -2.346 3.068 sum -12.225 1.410 8.348 14.871 Atomic orbital electron populations 1.20592 0.84560 1.05037 1.04390 1.24793 1.03230 0.96616 1.05259 1.20193 0.91277 1.01166 1.06699 1.21010 0.97652 0.94399 0.94951 1.24454 0.96452 0.99401 1.22680 1.17350 0.87799 0.81995 0.75221 1.90794 1.43274 1.58590 1.51898 1.45679 1.08728 1.06479 1.75138 1.22660 0.83944 0.92939 0.99312 0.86556 1.21103 0.93888 0.88416 0.90146 1.44609 1.61658 1.21356 1.06518 1.19442 1.25990 1.04333 0.86605 0.88449 1.25585 1.01286 0.97217 1.00909 1.70194 1.47207 1.16296 1.25944 0.85085 0.77292 0.77800 0.79554 1.18278 1.22313 1.22957 1.22156 0.93135 0.98042 0.86448 1.23406 0.82210 0.89655 1.02513 0.82293 1.47327 1.12887 1.35328 1.11520 1.24090 1.01263 0.99955 0.91717 1.24019 0.93260 1.06532 0.98249 1.75007 1.23142 1.12146 1.04980 1.78199 0.91283 1.18679 1.21094 1.83313 0.93577 1.08200 1.68025 0.89059 0.90171 0.87954 0.80628 0.83067 0.76354 0.96211 0.97293 0.94657 0.90715 0.90224 0.79535 0.76885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 10.31 71.24 0.73 -0.31 16 2 C -0.18 -3.57 6.28 24.68 0.15 -3.42 16 3 C -0.16 -3.39 9.99 21.08 0.21 -3.18 16 4 C -0.05 -1.27 10.01 21.72 0.22 -1.05 16 5 C -0.31 -10.03 6.45 24.08 0.16 -9.88 16 6 C 0.59 22.99 7.78 86.42 0.67 23.66 16 7 O -0.56 -25.69 16.57 -4.36 -0.07 -25.76 16 8 N -0.71 -26.03 5.07 -440.95 -2.24 -28.27 16 9 C 0.12 4.37 3.10 46.18 0.14 4.51 16 10 H 0.12 4.23 7.70 -2.39 -0.02 4.21 16 11 C 0.19 8.98 4.75 86.73 0.41 9.39 16 12 N -0.61 -26.95 2.23 -691.98 -1.55 -28.50 16 13 C -0.24 -11.50 10.07 84.03 0.85 -10.65 16 14 H 0.10 4.42 7.83 -2.91 -0.02 4.40 16 15 C -0.06 -2.96 5.49 84.86 0.47 -2.49 16 16 N -0.95 -55.02 10.31 21.65 0.22 -54.80 16 17 Si 0.97 43.09 29.55 68.60 2.03 45.12 16 18 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 21 C 0.13 4.13 6.21 86.86 0.54 4.67 16 22 C 0.13 3.75 4.06 46.39 0.19 3.94 16 23 H 0.16 3.63 8.14 -2.39 -0.02 3.61 16 24 N -0.28 -8.81 2.45 -320.56 -0.79 -9.60 16 25 C -0.02 -0.61 10.01 83.49 0.84 0.22 16 26 C -0.06 -1.90 12.05 83.73 1.01 -0.89 16 27 N -0.29 -9.31 12.41 -58.26 -0.72 -10.03 16 28 N -0.11 -3.71 12.21 37.02 0.45 -3.26 16 29 S 0.20 5.21 22.10 -56.49 -1.25 3.96 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.40 14.03 5.84 -92.71 -0.54 13.48 16 36 H 0.02 1.07 7.27 -2.39 -0.02 1.06 16 37 H 0.01 0.50 7.51 -2.39 -0.02 0.49 16 38 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.07 2.24 7.86 -2.39 -0.02 2.23 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.19 6.92 6.81 -2.91 -0.02 6.90 16 42 H 0.21 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -69.53 364.80 3.20 -66.33 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.53 Total: 30.28 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 6.58 Total: 14.52 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -4.62 Total: -134.46 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.07 Total: -25.76 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.25 Total: 3.96 kcal Total: -69.53 3.20 -66.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069891364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.451 kcal (2) G-P(sol) polarization free energy of solvation -69.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds