Wall clock time and date at job start Wed Apr 1 2020 04:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99591 * 2 1 4 4 H 1.48504 * 109.46876 * 239.99913 * 3 2 1 5 5 H 1.48503 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47392 * 120.00220 * 3 2 1 7 7 C 1.38807 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00634 * 207.26310 * 7 2 1 9 9 N 1.36942 * 119.99624 * 27.26897 * 7 2 1 10 10 C 1.47422 * 125.64985 * 13.32566 * 9 7 2 11 11 C 1.55133 * 104.72398 * 155.81668 * 10 9 7 12 12 H 1.08994 * 110.90429 * 155.27458 * 11 10 9 13 13 N 1.46503 * 111.22206 * 279.17958 * 11 10 9 14 14 C 1.34783 * 119.99713 * 267.20283 * 13 11 10 15 15 O 1.21285 * 119.99676 * 359.97438 * 14 13 11 16 16 C 1.50691 * 119.99985 * 180.02562 * 14 13 11 17 17 C 1.50704 * 109.47209 * 180.02562 * 16 14 13 18 18 C 1.38424 * 122.54066 * 89.99708 * 17 16 14 19 19 C 1.33387 * 114.92240 * 179.97438 * 18 17 16 20 20 S 1.75885 * 109.59200 * 0.02562 * 19 18 17 21 21 C 1.33386 * 122.53663 * 269.70521 * 17 16 14 22 22 C 1.55158 * 101.48578 * 37.29389 * 11 10 9 23 23 H 1.08995 * 110.71863 * 82.69254 * 22 11 10 24 24 N 1.46496 * 110.87340 * 205.90009 * 22 11 10 25 25 C 1.35315 * 125.86880 * 79.77715 * 24 22 11 26 26 C 1.35347 * 106.17796 * 179.90773 * 25 24 22 27 27 N 1.33781 * 106.49363 * 0.34955 * 26 25 24 28 28 N 1.28634 * 108.88325 * 359.77963 * 27 26 25 29 29 C 1.47020 * 125.64687 * 193.63224 * 9 7 2 30 30 H 0.97005 * 119.99700 * 185.85251 * 1 2 3 31 31 H 1.08997 * 110.36712 * 274.74794 * 10 9 7 32 32 H 1.09000 * 110.36633 * 37.06764 * 10 9 7 33 33 H 0.96990 * 120.00628 * 87.20619 * 13 11 10 34 34 H 1.09004 * 109.47179 * 299.99643 * 16 14 13 35 35 H 1.08998 * 109.47756 * 59.99782 * 16 14 13 36 36 H 1.08006 * 122.53872 * 0.02562 * 18 17 16 37 37 H 1.07997 * 125.20228 * 179.97438 * 19 18 17 38 38 H 1.07991 * 125.20598 * 0.02591 * 21 17 16 39 39 H 1.08002 * 126.90839 * 0.02562 * 25 24 22 40 40 H 1.07991 * 126.75586 * 180.12908 * 26 25 24 41 41 H 1.09003 * 109.88520 * 300.43980 * 29 9 7 42 42 H 1.08992 * 109.88464 * 61.60433 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0003 -1.2539 0.4290 9 7 1.4397 -2.3223 -0.5423 10 6 0.2379 -2.3470 -1.3957 11 6 0.3681 -3.6531 -2.2226 12 1 -0.6099 -4.0046 -2.5511 13 7 1.2681 -3.4705 -3.3642 14 6 0.7699 -3.1130 -4.5645 15 8 -0.4233 -2.9430 -4.6996 16 6 1.6954 -2.9257 -5.7388 17 6 0.8939 -2.5295 -6.9520 18 6 0.6276 -1.2088 -7.2696 19 6 -0.0948 -1.0316 -8.3769 20 16 -0.4803 -2.5944 -9.0859 21 6 0.3922 -3.4247 -7.8040 22 6 0.9847 -4.6202 -1.1776 23 1 0.2094 -5.0424 -0.5385 24 7 1.7469 -5.6837 -1.8365 25 6 3.0037 -5.5722 -2.3254 26 6 3.3163 -6.7837 -2.8417 27 7 2.2465 -7.5645 -2.6529 28 7 1.3340 -6.8831 -2.0550 29 6 1.9207 -3.7003 -0.3655 30 1 -0.4850 -0.8357 0.0857 31 1 -0.6626 -2.3720 -0.7821 32 1 0.2238 -1.4801 -2.0563 33 1 2.2222 -3.6068 -3.2563 34 1 2.4187 -2.1429 -5.5102 35 1 2.2215 -3.8590 -5.9395 36 1 0.9789 -0.3841 -6.6670 37 1 -0.3974 -0.0750 -8.7764 38 1 0.5025 -4.4955 -7.7186 39 1 3.6317 -4.6938 -2.3057 40 1 4.2450 -7.0637 -3.3162 41 1 2.9412 -3.7876 -0.7384 42 1 1.8847 -3.9730 0.6892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069893345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:31 Heat of formation + Delta-G solvation = 139.114204 kcal Electronic energy + Delta-G solvation = -28518.665778 eV Core-core repulsion = 24629.230875 eV Total energy + Delta-G solvation = -3889.434902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -43.26430 -40.04936 -38.54439 -37.37229 -34.48379 -33.62013 -31.99271 -31.26244 -31.03754 -29.13331 -28.13334 -27.56062 -24.82019 -23.58043 -22.77830 -22.48785 -21.17568 -20.44435 -20.09433 -18.81561 -18.16468 -17.67949 -17.42366 -17.07485 -16.24645 -15.74608 -15.35512 -15.04677 -14.84396 -14.57988 -14.10002 -14.00146 -13.69886 -13.46506 -13.42517 -13.10152 -12.80103 -12.65748 -12.27370 -12.20296 -11.97832 -11.77191 -11.65393 -11.58771 -11.12513 -10.97556 -10.85223 -10.84917 -10.76324 -10.16148 -9.97330 -9.78835 -9.77895 -9.38032 -8.94698 -8.82698 -8.64944 -8.41979 -7.27117 -6.31595 -3.39487 0.97475 1.62056 1.63446 1.92675 2.28853 2.58774 2.61250 2.76982 3.36626 3.37509 3.40943 3.59332 4.30053 4.40564 4.41926 4.57850 4.70442 4.81976 4.91905 4.96192 4.99843 5.10783 5.16118 5.21968 5.25660 5.31791 5.40059 5.43513 5.59960 5.70521 5.81444 5.91897 5.98968 6.03958 6.16087 6.25469 6.32398 6.41192 6.63548 6.71563 6.74082 7.44474 7.56006 8.21662 8.33921 8.55680 8.72773 9.54647 10.00261 11.01054 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.007486 B = 0.004451 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3739.612611 B = 6289.353137 C = 9227.855092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.017 4.017 3 Si 1.066 2.934 4 H -0.292 1.292 5 H -0.284 1.284 6 H -0.291 1.291 7 C -0.347 4.347 8 H 0.071 0.929 9 N -0.594 5.594 10 C 0.137 3.863 11 C 0.124 3.876 12 H 0.107 0.893 13 N -0.712 5.712 14 C 0.519 3.481 15 O -0.528 6.528 16 C -0.082 4.082 17 C -0.079 4.079 18 C -0.118 4.118 19 C -0.212 4.212 20 S 0.087 5.913 21 C -0.199 4.199 22 C 0.116 3.884 23 H 0.132 0.868 24 N -0.267 5.267 25 C -0.052 4.052 26 C -0.055 4.055 27 N -0.279 5.279 28 N -0.084 5.084 29 C 0.130 3.870 30 H 0.270 0.730 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.188 0.812 40 H 0.188 0.812 41 H 0.040 0.960 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 -6.561 -13.036 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.219 4.219 3 Si 0.894 3.106 4 H -0.220 1.220 5 H -0.209 1.209 6 H -0.218 1.218 7 C -0.474 4.474 8 H 0.089 0.911 9 N -0.323 5.323 10 C 0.010 3.990 11 C 0.016 3.984 12 H 0.125 0.875 13 N -0.365 5.365 14 C 0.304 3.696 15 O -0.403 6.403 16 C -0.124 4.124 17 C -0.092 4.092 18 C -0.148 4.148 19 C -0.347 4.347 20 S 0.350 5.650 21 C -0.335 4.335 22 C 0.013 3.987 23 H 0.150 0.850 24 N -0.060 5.060 25 C -0.203 4.203 26 C -0.212 4.212 27 N -0.144 5.144 28 N -0.064 5.064 29 C 0.003 3.997 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.205 0.795 40 H 0.205 0.795 41 H 0.057 0.943 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.938 -6.154 -14.285 15.829 hybrid contribution 2.325 -0.408 1.590 2.846 sum 5.263 -6.561 -12.695 15.229 Atomic orbital electron populations 1.70830 1.06678 1.30419 1.47045 1.25790 0.96361 1.01070 0.98728 0.83515 0.74847 0.75948 0.76247 1.21968 1.20907 1.21834 1.19703 0.99560 0.86994 1.41138 0.91113 1.44492 1.31258 1.00039 1.56465 1.22101 0.90691 0.94175 0.91998 1.22656 0.93998 0.96339 0.85423 0.87504 1.45756 1.10814 1.70957 1.08976 1.20441 0.89348 0.76346 0.83424 1.90728 1.16047 1.49383 1.84181 1.20357 0.97379 1.04182 0.90517 1.18305 1.01581 0.92827 0.96479 1.20074 1.00567 0.96929 0.97278 1.25505 1.06661 1.00921 1.01604 1.84118 1.54299 0.98458 1.28134 1.25366 1.05263 1.03069 0.99800 1.23314 0.95595 0.84676 0.95092 0.85002 1.47418 1.11239 1.10094 1.37293 1.23593 0.89087 1.02574 1.05079 1.23548 1.00461 0.90786 1.06428 1.75094 0.99348 1.26145 1.13802 1.78312 1.21851 0.89825 1.16365 1.21617 0.94986 0.85989 0.97113 0.91814 0.93820 0.90973 0.76766 0.87571 0.88149 0.84131 0.81883 0.82166 0.79475 0.79543 0.94262 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.71 12.82 55.49 0.71 -25.00 16 2 C -0.02 -0.44 5.09 -17.43 -0.09 -0.53 16 3 Si 1.07 23.58 30.00 -169.99 -5.10 18.48 16 4 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.35 -8.71 10.05 -15.06 -0.15 -8.86 16 8 H 0.07 1.76 7.96 -52.49 -0.42 1.34 16 9 N -0.59 -12.83 3.33 -169.94 -0.57 -13.40 16 10 C 0.14 2.85 4.93 -2.41 -0.01 2.84 16 11 C 0.12 2.05 3.29 -65.66 -0.22 1.83 16 12 H 0.11 1.85 7.54 -51.93 -0.39 1.46 16 13 N -0.71 -10.57 4.68 -51.61 -0.24 -10.81 16 14 C 0.52 8.11 7.82 -10.99 -0.09 8.02 16 15 O -0.53 -10.38 15.67 5.55 0.09 -10.30 16 16 C -0.08 -0.95 5.96 -29.04 -0.17 -1.13 16 17 C -0.08 -1.01 4.29 -106.25 -0.46 -1.47 16 18 C -0.12 -1.50 9.98 -41.21 -0.41 -1.91 16 19 C -0.21 -2.41 11.23 29.04 0.33 -2.09 16 20 S 0.09 0.95 23.34 -107.50 -2.51 -1.56 16 21 C -0.20 -2.40 10.98 29.04 0.32 -2.08 16 22 C 0.12 1.74 3.84 -66.09 -0.25 1.48 16 23 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 24 N -0.27 -3.77 3.15 -52.98 -0.17 -3.94 16 25 C -0.05 -0.61 8.49 -17.05 -0.14 -0.76 16 26 C -0.05 -0.64 12.05 -17.73 -0.21 -0.86 16 27 N -0.28 -4.29 12.41 30.23 0.38 -3.91 16 28 N -0.08 -1.36 13.16 60.35 0.79 -0.56 16 29 C 0.13 2.21 6.85 -3.06 -0.02 2.19 16 30 H 0.27 7.58 5.83 -40.82 -0.24 7.34 16 31 H 0.04 0.97 6.84 -51.93 -0.36 0.61 16 32 H 0.07 1.75 7.73 -51.93 -0.40 1.35 16 33 H 0.40 5.09 6.08 -40.82 -0.25 4.84 16 34 H 0.11 1.06 8.13 -51.93 -0.42 0.64 16 35 H 0.10 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 37 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.19 1.73 6.49 -52.49 -0.34 1.39 16 40 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.04 0.62 6.03 -51.93 -0.31 0.31 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -32.69 364.00 -7.59 -40.28 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.88 Total: 8.54 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -1.58 Total: -3.31 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.91 Total: -57.62 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.10 Total: 18.48 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.69 -7.59 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069893345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.394 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds