Wall clock time and date at job start Wed Apr 1 2020 04:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99591 * 2 1 4 4 H 1.48504 * 109.46876 * 239.99913 * 3 2 1 5 5 H 1.48503 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47392 * 120.00220 * 3 2 1 7 7 C 1.38807 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00634 * 207.26310 * 7 2 1 9 9 N 1.36942 * 119.99624 * 27.26897 * 7 2 1 10 10 C 1.47422 * 125.64985 * 13.32566 * 9 7 2 11 11 C 1.55133 * 104.72398 * 155.81668 * 10 9 7 12 12 H 1.08994 * 110.90429 * 155.27458 * 11 10 9 13 13 N 1.46503 * 111.22206 * 279.17958 * 11 10 9 14 14 C 1.34783 * 119.99713 * 267.20283 * 13 11 10 15 15 O 1.21285 * 119.99676 * 359.97438 * 14 13 11 16 16 C 1.50691 * 119.99985 * 180.02562 * 14 13 11 17 17 C 1.50704 * 109.47209 * 180.02562 * 16 14 13 18 18 C 1.38424 * 122.54066 * 89.99708 * 17 16 14 19 19 C 1.33387 * 114.92240 * 179.97438 * 18 17 16 20 20 S 1.75885 * 109.59200 * 0.02562 * 19 18 17 21 21 C 1.33386 * 122.53663 * 269.70521 * 17 16 14 22 22 C 1.55158 * 101.48578 * 37.29389 * 11 10 9 23 23 H 1.08995 * 110.71863 * 82.69254 * 22 11 10 24 24 N 1.46496 * 110.87340 * 205.90009 * 22 11 10 25 25 C 1.35315 * 125.86880 * 79.77715 * 24 22 11 26 26 C 1.35347 * 106.17796 * 179.90773 * 25 24 22 27 27 N 1.33781 * 106.49363 * 0.34955 * 26 25 24 28 28 N 1.28634 * 108.88325 * 359.77963 * 27 26 25 29 29 C 1.47020 * 125.64687 * 193.63224 * 9 7 2 30 30 H 0.97005 * 119.99700 * 185.85251 * 1 2 3 31 31 H 1.08997 * 110.36712 * 274.74794 * 10 9 7 32 32 H 1.09000 * 110.36633 * 37.06764 * 10 9 7 33 33 H 0.96990 * 120.00628 * 87.20619 * 13 11 10 34 34 H 1.09004 * 109.47179 * 299.99643 * 16 14 13 35 35 H 1.08998 * 109.47756 * 59.99782 * 16 14 13 36 36 H 1.08006 * 122.53872 * 0.02562 * 18 17 16 37 37 H 1.07997 * 125.20228 * 179.97438 * 19 18 17 38 38 H 1.07991 * 125.20598 * 0.02591 * 21 17 16 39 39 H 1.08002 * 126.90839 * 0.02562 * 25 24 22 40 40 H 1.07991 * 126.75586 * 180.12908 * 26 25 24 41 41 H 1.09003 * 109.88520 * 300.43980 * 29 9 7 42 42 H 1.08992 * 109.88464 * 61.60433 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0003 -1.2539 0.4290 9 7 1.4397 -2.3223 -0.5423 10 6 0.2379 -2.3470 -1.3957 11 6 0.3681 -3.6531 -2.2226 12 1 -0.6099 -4.0046 -2.5511 13 7 1.2681 -3.4705 -3.3642 14 6 0.7699 -3.1130 -4.5645 15 8 -0.4233 -2.9430 -4.6996 16 6 1.6954 -2.9257 -5.7388 17 6 0.8939 -2.5295 -6.9520 18 6 0.6276 -1.2088 -7.2696 19 6 -0.0948 -1.0316 -8.3769 20 16 -0.4803 -2.5944 -9.0859 21 6 0.3922 -3.4247 -7.8040 22 6 0.9847 -4.6202 -1.1776 23 1 0.2094 -5.0424 -0.5385 24 7 1.7469 -5.6837 -1.8365 25 6 3.0037 -5.5722 -2.3254 26 6 3.3163 -6.7837 -2.8417 27 7 2.2465 -7.5645 -2.6529 28 7 1.3340 -6.8831 -2.0550 29 6 1.9207 -3.7003 -0.3655 30 1 -0.4850 -0.8357 0.0857 31 1 -0.6626 -2.3720 -0.7821 32 1 0.2238 -1.4801 -2.0563 33 1 2.2222 -3.6068 -3.2563 34 1 2.4187 -2.1429 -5.5102 35 1 2.2215 -3.8590 -5.9395 36 1 0.9789 -0.3841 -6.6670 37 1 -0.3974 -0.0750 -8.7764 38 1 0.5025 -4.4955 -7.7186 39 1 3.6317 -4.6938 -2.3057 40 1 4.2450 -7.0637 -3.3162 41 1 2.9412 -3.7876 -0.7384 42 1 1.8847 -3.9730 0.6892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069893345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:31 Heat of formation + Delta-G solvation = 117.251776 kcal Electronic energy + Delta-G solvation = -28519.613804 eV Core-core repulsion = 24629.230875 eV Total energy + Delta-G solvation = -3890.382928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.33194 -41.31527 -39.80314 -38.50566 -36.05703 -34.87231 -33.57823 -32.32611 -32.05534 -30.55826 -29.44078 -28.75558 -26.52197 -24.61259 -23.91585 -23.60509 -22.61451 -21.67437 -21.49803 -19.89322 -19.65195 -18.79649 -18.54898 -18.27323 -17.43778 -16.89913 -16.43469 -16.37080 -16.03916 -15.86048 -15.63351 -15.39745 -15.11937 -14.90476 -14.67872 -13.97936 -13.87921 -13.79648 -13.64861 -13.37390 -13.17064 -12.96292 -12.81385 -12.75237 -12.61283 -12.52725 -12.48490 -11.97409 -11.91653 -11.73757 -11.64227 -11.17312 -11.07455 -10.61390 -10.41279 -10.22586 -9.72880 -9.30790 -9.11546 -8.33744 -5.37292 0.07085 0.58609 0.75563 1.03532 1.14579 1.53899 1.59508 1.60542 1.64383 1.66634 1.84415 2.21297 2.61099 3.06051 3.12258 3.17572 3.38609 3.62377 3.71172 3.74114 3.94061 3.95389 4.03630 4.16330 4.28739 4.31238 4.32784 4.47824 4.51231 4.57360 4.61264 4.71836 4.77539 4.79781 4.92198 5.08776 5.25168 5.29393 5.42786 5.50100 5.56362 5.61787 6.25222 6.38010 6.77904 7.13816 7.50344 7.62411 8.13937 8.99445 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.007486 B = 0.004451 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3739.612611 B = 6289.353137 C = 9227.855092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.072 4.072 3 Si 1.111 2.889 4 H -0.277 1.277 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.150 3.850 11 C 0.138 3.862 12 H 0.097 0.903 13 N -0.704 5.704 14 C 0.514 3.486 15 O -0.575 6.575 16 C -0.073 4.073 17 C -0.097 4.097 18 C -0.142 4.142 19 C -0.216 4.216 20 S 0.104 5.896 21 C -0.211 4.211 22 C 0.136 3.864 23 H 0.138 0.862 24 N -0.271 5.271 25 C -0.047 4.047 26 C -0.045 4.045 27 N -0.303 5.303 28 N -0.119 5.119 29 C 0.133 3.867 30 H 0.257 0.743 31 H 0.020 0.980 32 H 0.031 0.969 33 H 0.409 0.591 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.183 0.817 38 H 0.173 0.827 39 H 0.217 0.783 40 H 0.227 0.773 41 H 0.066 0.934 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 -7.501 -14.131 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.269 4.269 3 Si 0.936 3.064 4 H -0.203 1.203 5 H -0.228 1.228 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.022 3.978 11 C 0.030 3.970 12 H 0.115 0.885 13 N -0.357 5.357 14 C 0.302 3.698 15 O -0.453 6.453 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.172 4.172 19 C -0.351 4.351 20 S 0.368 5.632 21 C -0.347 4.347 22 C 0.032 3.968 23 H 0.155 0.845 24 N -0.064 5.064 25 C -0.198 4.198 26 C -0.202 4.202 27 N -0.168 5.168 28 N -0.098 5.098 29 C 0.007 3.993 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.247 0.753 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.200 0.800 38 H 0.191 0.809 39 H 0.234 0.766 40 H 0.243 0.757 41 H 0.084 0.916 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.918 -7.155 -15.383 17.968 hybrid contribution 1.460 -0.194 1.894 2.399 sum 7.378 -7.349 -13.489 17.041 Atomic orbital electron populations 1.70930 1.07927 1.29707 1.50665 1.26987 0.96339 1.04370 0.99154 0.82907 0.73853 0.72134 0.77533 1.20258 1.22773 1.19805 1.19988 0.99501 0.88021 1.39295 0.90550 1.44580 1.31178 1.01453 1.56480 1.21783 0.89830 0.94739 0.91426 1.22242 0.94559 0.94359 0.85868 0.88496 1.45684 1.11180 1.70523 1.08300 1.21251 0.89353 0.74922 0.84298 1.90709 1.18355 1.51344 1.84925 1.20406 0.96575 1.06391 0.88102 1.18498 1.02355 0.92999 0.97089 1.20262 1.01653 0.97240 0.98055 1.25843 1.05875 1.02102 1.01288 1.84029 1.53691 0.97981 1.27497 1.25646 1.05125 1.03842 1.00044 1.22921 0.95292 0.84472 0.94069 0.84457 1.47280 1.12003 1.09472 1.37640 1.24153 0.88135 1.03699 1.03801 1.24220 1.00706 0.90030 1.05278 1.75077 1.00494 1.27037 1.14229 1.78339 1.22841 0.90533 1.18059 1.21694 0.96303 0.83784 0.97560 0.93242 0.96220 0.95101 0.75280 0.85692 0.84993 0.84151 0.79972 0.80919 0.76635 0.75688 0.91590 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.66 12.82 21.65 0.28 -55.38 16 2 C -0.07 -3.83 5.09 84.86 0.43 -3.39 16 3 Si 1.11 47.60 30.00 68.60 2.06 49.66 16 4 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.34 -16.90 10.05 84.03 0.84 -16.06 16 8 H 0.08 3.66 7.96 -2.91 -0.02 3.64 16 9 N -0.61 -26.15 3.33 -691.55 -2.30 -28.45 16 10 C 0.15 6.44 4.93 86.93 0.43 6.87 16 11 C 0.14 4.59 3.29 46.46 0.15 4.74 16 12 H 0.10 3.47 7.54 -2.39 -0.02 3.45 16 13 N -0.70 -19.97 4.68 -435.59 -2.04 -22.00 16 14 C 0.51 15.64 7.82 87.65 0.69 16.33 16 15 O -0.57 -23.00 15.67 -3.05 -0.05 -23.05 16 16 C -0.07 -1.54 5.96 29.10 0.17 -1.36 16 17 C -0.10 -2.35 4.29 -20.92 -0.09 -2.44 16 18 C -0.14 -3.50 9.98 21.22 0.21 -3.29 16 19 C -0.22 -4.71 11.23 66.72 0.75 -3.96 16 20 S 0.10 2.17 23.34 -56.49 -1.32 0.85 16 21 C -0.21 -4.79 10.98 66.72 0.73 -4.06 16 22 C 0.14 3.90 3.84 46.18 0.18 4.08 16 23 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 24 N -0.27 -7.02 3.15 -321.54 -1.01 -8.04 16 25 C -0.05 -0.92 8.49 83.49 0.71 -0.21 16 26 C -0.04 -0.87 12.05 83.73 1.01 0.14 16 27 N -0.30 -8.61 12.41 -58.26 -0.72 -9.34 16 28 N -0.12 -3.65 13.16 37.02 0.49 -3.16 16 29 C 0.13 4.25 6.85 86.73 0.59 4.85 16 30 H 0.26 15.20 5.83 -92.70 -0.54 14.66 16 31 H 0.02 0.95 6.84 -2.39 -0.02 0.93 16 32 H 0.03 1.57 7.73 -2.39 -0.02 1.55 16 33 H 0.41 9.30 6.08 -92.72 -0.56 8.74 16 34 H 0.13 2.17 8.13 -2.39 -0.02 2.15 16 35 H 0.13 1.93 8.12 -2.39 -0.02 1.91 16 36 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.18 3.07 8.06 -2.91 -0.02 3.04 16 38 H 0.17 3.33 8.06 -2.92 -0.02 3.30 16 39 H 0.22 2.84 6.49 -2.91 -0.02 2.83 16 40 H 0.23 2.38 8.06 -2.92 -0.02 2.35 16 41 H 0.07 1.82 6.03 -2.39 -0.01 1.80 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -73.95 364.00 2.93 -71.02 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.74 Total: 25.64 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.81 Total: 2.23 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -5.31 Total: -126.37 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.06 Total: 49.66 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.32 Total: 0.85 kcal Total: -73.95 2.93 -71.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069893345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.276 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds