Wall clock time and date at job start Wed Apr 1 2020 05:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.99671 * 2 1 4 4 C 1.54327 * 109.88048 * 121.09437 * 2 1 3 5 5 H 1.09000 * 110.71634 * 215.76320 * 4 2 1 6 6 N 1.46494 * 110.72200 * 338.86326 * 4 2 1 7 7 C 1.38646 * 120.00176 * 205.00001 * 6 4 2 8 8 C 1.39619 * 120.03450 * 359.97438 * 7 6 4 9 9 C 1.38259 * 118.03283 * 179.72086 * 8 7 6 10 10 C 1.40158 * 117.97607 * 0.28261 * 9 8 7 11 11 C 1.43201 * 120.10395 * 179.97438 * 10 9 8 12 12 N 8.90710 * 96.45402 * 99.38564 * 2 1 3 13 13 N 1.32792 * 119.78175 * 359.97438 * 10 9 8 14 14 N 1.28355 * 122.09852 * 0.02562 * 13 10 9 15 15 C 1.55162 * 102.94153 * 97.22924 * 4 2 1 16 16 C 1.54905 * 101.58183 * 35.49932 * 15 4 2 17 17 N 1.47024 * 109.88710 * 238.90389 * 2 1 3 18 18 C 1.34776 * 125.64427 * 59.55666 * 17 2 1 19 19 O 1.21282 * 120.00440 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99672 * 180.02562 * 18 17 2 21 21 S 1.80994 * 109.46997 * 180.02562 * 20 18 17 22 22 C 1.76203 * 100.00111 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99766 * 359.97438 * 22 21 20 24 24 C 1.38795 * 120.00182 * 180.02562 * 22 21 20 25 25 N 1.31636 * 120.00253 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00179 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47044 * 89.99484 * 26 24 22 28 28 H 1.48496 * 109.47381 * 209.99786 * 26 24 22 29 29 H 1.48496 * 109.46838 * 330.00008 * 26 24 22 30 30 H 1.08991 * 109.47242 * 298.90268 * 1 2 3 31 31 H 1.09003 * 109.46827 * 58.91030 * 1 2 3 32 32 H 1.09005 * 109.46848 * 178.90380 * 1 2 3 33 33 H 0.97001 * 119.99812 * 24.99615 * 6 4 2 34 34 H 1.08002 * 120.98611 * 0.02562 * 8 7 6 35 35 H 1.08003 * 121.01098 * 180.29708 * 9 8 7 36 36 H 1.08997 * 111.00279 * 153.57748 * 15 4 2 37 37 H 1.08999 * 110.99638 * 277.42460 * 15 4 2 38 38 H 1.09004 * 110.36710 * 204.15078 * 16 15 4 39 39 H 1.08999 * 110.45992 * 81.87696 * 16 15 4 40 40 H 1.09004 * 109.47232 * 300.00059 * 20 18 17 41 41 H 1.09003 * 109.47411 * 60.00034 * 20 18 17 42 42 H 0.96992 * 120.00216 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.9639 -0.2813 1.6201 6 7 1.0292 -0.8026 2.2875 7 6 1.3998 -0.9405 3.6164 8 6 2.7502 -1.0293 3.9597 9 6 3.0733 -1.1600 5.2976 10 6 2.0244 -1.2013 6.2263 11 6 2.3071 -1.3362 7.6236 12 7 2.5312 -1.4434 8.7322 13 7 0.7676 -1.1149 5.8061 14 7 0.4708 -0.9936 4.5633 15 6 2.3519 -2.1695 0.6924 16 6 2.8569 -1.8498 -0.7367 17 7 2.0301 -0.7141 -1.1839 18 6 1.7754 -0.3844 -2.4657 19 8 1.0792 0.5761 -2.7180 20 6 2.3558 -1.2095 -3.5854 21 16 1.8370 -0.5181 -5.1756 22 6 2.6333 -1.6436 -6.2729 23 1 3.2244 -2.4563 -5.8775 24 6 2.5017 -1.4849 -7.6455 25 7 1.7817 -0.4940 -8.1276 26 14 3.3465 -2.6777 -8.8088 27 1 2.4344 -3.8122 -9.1027 28 1 3.6889 -1.9776 -10.0728 29 1 4.5875 -3.1915 -8.1756 30 1 -0.3633 0.4966 0.8996 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3633 -1.0275 -0.0197 33 1 0.0909 -0.7413 2.0495 34 1 3.5199 -0.9919 3.2030 35 1 4.1027 -1.2279 5.6174 36 1 3.1270 -2.6618 1.2797 37 1 1.4452 -2.7736 0.6604 38 1 2.7089 -2.7081 -1.3922 39 1 3.9094 -1.5672 -0.7146 40 1 3.4438 -1.1952 -3.5210 41 1 2.0003 -2.2365 -3.5020 42 1 1.6895 -0.3834 -9.0867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090203240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:33 Heat of formation + Delta-G solvation = 77.265339 kcal Electronic energy + Delta-G solvation = -26366.064258 eV Core-core repulsion = 22473.947387 eV Total energy + Delta-G solvation = -3892.116870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70965 -40.47654 -38.22429 -37.13956 -35.84134 -33.79360 -32.63130 -32.49632 -31.52883 -30.48706 -28.55496 -26.69680 -25.57238 -25.30979 -24.64331 -23.25417 -21.24588 -20.13650 -19.22845 -18.97187 -17.97471 -17.82018 -16.79633 -16.37035 -15.97016 -15.63269 -15.30361 -15.01638 -14.86596 -14.60833 -14.34641 -14.17665 -14.01974 -13.77074 -13.61303 -13.40451 -13.28607 -12.99484 -12.81161 -12.65237 -12.57422 -12.18611 -12.07664 -11.86765 -11.68312 -11.29176 -11.12487 -11.08772 -11.06819 -10.88728 -10.82483 -10.24874 -9.89098 -9.52256 -9.13154 -8.78041 -8.71070 -8.32311 -6.58435 -6.28367 -3.99888 0.07311 0.21290 1.96133 2.18577 2.30797 2.76276 2.90125 3.02522 3.17356 3.19821 3.23375 3.25163 3.48328 3.77498 3.84434 3.93002 4.03116 4.09963 4.13756 4.24406 4.41775 4.62899 4.79123 4.82633 4.90071 5.02672 5.06799 5.07502 5.16781 5.18028 5.28339 5.33080 5.38401 5.51219 5.59400 5.69210 5.79071 6.00795 6.05147 6.19292 6.30575 6.77582 6.89046 7.44671 7.52908 8.09869 8.28183 8.39010 9.17068 10.79005 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.001742 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.275983 B =16073.159670 C =16617.528748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.135 3.865 3 H 0.086 0.914 4 C 0.136 3.864 5 H 0.107 0.893 6 N -0.689 5.689 7 C 0.366 3.634 8 C -0.179 4.179 9 C -0.031 4.031 10 C 0.069 3.931 11 C 0.277 3.723 12 N -0.391 5.391 13 N -0.149 5.149 14 N -0.295 5.295 15 C -0.148 4.148 16 C 0.101 3.899 17 N -0.623 5.623 18 C 0.552 3.448 19 O -0.509 6.509 20 C -0.148 4.148 21 S -0.059 6.059 22 C -0.537 4.537 23 H 0.073 0.927 24 C 0.075 3.925 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.419 0.581 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 -3.209 23.892 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.031 3.969 3 H 0.104 0.896 4 C 0.030 3.970 5 H 0.124 0.876 6 N -0.323 5.323 7 C 0.124 3.876 8 C -0.213 4.213 9 C -0.061 4.061 10 C -0.082 4.082 11 C -0.041 4.041 12 N -0.068 5.068 13 N 0.005 4.995 14 N -0.149 5.149 15 C -0.187 4.187 16 C -0.023 4.023 17 N -0.362 5.362 18 C 0.341 3.659 19 O -0.382 6.382 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.685 4.685 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.202 1.202 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.261 0.739 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.430 -1.767 25.101 25.280 hybrid contribution 2.434 -1.907 -1.392 3.391 sum 4.864 -3.674 23.709 24.480 Atomic orbital electron populations 1.22190 0.94485 1.02926 1.03785 1.21498 0.95411 0.96312 0.83720 0.89597 1.22202 0.91129 0.96883 0.86830 0.87564 1.44800 1.10814 1.75827 1.00839 1.20240 0.91059 0.88549 0.87783 1.21847 0.95883 1.06118 0.97404 1.22077 1.00570 0.91679 0.91727 1.17688 0.92506 1.10205 0.87776 1.24536 0.94151 0.94130 0.91285 1.81293 1.07013 1.07900 1.10629 1.73179 1.16205 1.02698 1.07437 1.73293 1.27853 1.19454 0.94297 1.23329 1.03112 0.96425 0.95841 1.22288 0.95227 0.90107 0.94684 1.48539 1.52299 1.30731 1.04582 1.20054 0.79967 0.84765 0.81152 1.90710 1.37118 1.27965 1.82407 1.23520 1.03817 1.02516 0.99949 1.85422 1.67284 1.40060 0.90486 1.22846 1.36723 1.15846 0.93086 0.90909 1.24988 0.95210 0.95941 0.97354 1.70010 1.37344 1.29103 1.13730 0.86169 0.79500 0.80222 0.79620 1.20240 1.20710 1.19689 0.91489 0.89464 0.91961 0.73934 0.82307 0.82281 0.89204 0.89496 0.89646 0.90767 0.89213 0.89254 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 7.93 37.16 0.29 -1.32 16 2 C 0.14 1.17 3.48 -66.95 -0.23 0.94 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.14 0.67 2.90 -66.09 -0.19 0.48 16 5 H 0.11 0.32 6.38 -51.93 -0.33 -0.01 16 6 N -0.69 -3.72 5.05 -52.04 -0.26 -3.98 16 7 C 0.37 2.28 7.74 -154.88 -1.20 1.08 16 8 C -0.18 -0.67 9.30 -39.06 -0.36 -1.04 16 9 C -0.03 -0.12 9.91 -38.85 -0.38 -0.50 16 10 C 0.07 0.48 6.67 -84.80 -0.57 -0.08 16 11 C 0.28 2.28 15.57 -22.47 -0.35 1.93 16 12 N -0.39 -4.00 18.54 41.84 0.78 -3.23 16 13 N -0.15 -1.38 11.44 32.29 0.37 -1.01 16 14 N -0.29 -2.62 11.54 31.23 0.36 -2.26 16 15 C -0.15 -0.69 6.77 -24.58 -0.17 -0.86 16 16 C 0.10 0.73 6.69 -2.53 -0.02 0.71 16 17 N -0.62 -6.99 3.08 -163.02 -0.50 -7.49 16 18 C 0.55 9.26 7.65 -10.98 -0.08 9.18 16 19 O -0.51 -10.50 14.77 5.56 0.08 -10.42 16 20 C -0.15 -2.74 5.16 36.01 0.19 -2.55 16 21 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 22 C -0.54 -14.68 9.50 30.94 0.29 -14.39 16 23 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 24 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 25 N -0.87 -25.40 13.22 55.49 0.73 -24.66 16 26 Si 0.92 20.69 29.55 -169.99 -5.02 15.66 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 30 H 0.07 0.47 6.76 -51.93 -0.35 0.12 16 31 H 0.09 1.12 6.77 -51.93 -0.35 0.77 16 32 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16 33 H 0.42 2.43 5.99 -40.82 -0.24 2.19 16 34 H 0.16 0.17 6.27 -52.49 -0.33 -0.16 16 35 H 0.16 0.11 8.06 -52.48 -0.42 -0.31 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.65 7.48 -51.93 -0.39 0.26 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 41 H 0.09 1.53 7.85 -51.92 -0.41 1.12 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -35.31 374.25 -7.82 -43.13 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.90 Total: -3.17 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.88 Total: -4.46 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 1.47 Total: -42.64 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.31 -7.82 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090203240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.392 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds