Wall clock time and date at job start Wed Apr 1 2020 05:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.99671 * 2 1 4 4 C 1.54327 * 109.88048 * 121.09437 * 2 1 3 5 5 H 1.09000 * 110.71634 * 215.76320 * 4 2 1 6 6 N 1.46494 * 110.72200 * 338.86326 * 4 2 1 7 7 C 1.38646 * 120.00176 * 205.00001 * 6 4 2 8 8 C 1.39619 * 120.03450 * 359.97438 * 7 6 4 9 9 C 1.38259 * 118.03283 * 179.72086 * 8 7 6 10 10 C 1.40158 * 117.97607 * 0.28261 * 9 8 7 11 11 C 1.43201 * 120.10395 * 179.97438 * 10 9 8 12 12 N 8.90710 * 96.45402 * 99.38564 * 2 1 3 13 13 N 1.32792 * 119.78175 * 359.97438 * 10 9 8 14 14 N 1.28355 * 122.09852 * 0.02562 * 13 10 9 15 15 C 1.55162 * 102.94153 * 97.22924 * 4 2 1 16 16 C 1.54905 * 101.58183 * 35.49932 * 15 4 2 17 17 N 1.47024 * 109.88710 * 238.90389 * 2 1 3 18 18 C 1.34776 * 125.64427 * 59.55666 * 17 2 1 19 19 O 1.21282 * 120.00440 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99672 * 180.02562 * 18 17 2 21 21 S 1.80994 * 109.46997 * 180.02562 * 20 18 17 22 22 C 1.76203 * 100.00111 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99766 * 359.97438 * 22 21 20 24 24 C 1.38795 * 120.00182 * 180.02562 * 22 21 20 25 25 N 1.31636 * 120.00253 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00179 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47044 * 89.99484 * 26 24 22 28 28 H 1.48496 * 109.47381 * 209.99786 * 26 24 22 29 29 H 1.48496 * 109.46838 * 330.00008 * 26 24 22 30 30 H 1.08991 * 109.47242 * 298.90268 * 1 2 3 31 31 H 1.09003 * 109.46827 * 58.91030 * 1 2 3 32 32 H 1.09005 * 109.46848 * 178.90380 * 1 2 3 33 33 H 0.97001 * 119.99812 * 24.99615 * 6 4 2 34 34 H 1.08002 * 120.98611 * 0.02562 * 8 7 6 35 35 H 1.08003 * 121.01098 * 180.29708 * 9 8 7 36 36 H 1.08997 * 111.00279 * 153.57748 * 15 4 2 37 37 H 1.08999 * 110.99638 * 277.42460 * 15 4 2 38 38 H 1.09004 * 110.36710 * 204.15078 * 16 15 4 39 39 H 1.08999 * 110.45992 * 81.87696 * 16 15 4 40 40 H 1.09004 * 109.47232 * 300.00059 * 20 18 17 41 41 H 1.09003 * 109.47411 * 60.00034 * 20 18 17 42 42 H 0.96992 * 120.00216 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.9639 -0.2813 1.6201 6 7 1.0292 -0.8026 2.2875 7 6 1.3998 -0.9405 3.6164 8 6 2.7502 -1.0293 3.9597 9 6 3.0733 -1.1600 5.2976 10 6 2.0244 -1.2013 6.2263 11 6 2.3071 -1.3362 7.6236 12 7 2.5312 -1.4434 8.7322 13 7 0.7676 -1.1149 5.8061 14 7 0.4708 -0.9936 4.5633 15 6 2.3519 -2.1695 0.6924 16 6 2.8569 -1.8498 -0.7367 17 7 2.0301 -0.7141 -1.1839 18 6 1.7754 -0.3844 -2.4657 19 8 1.0792 0.5761 -2.7180 20 6 2.3558 -1.2095 -3.5854 21 16 1.8370 -0.5181 -5.1756 22 6 2.6333 -1.6436 -6.2729 23 1 3.2244 -2.4563 -5.8775 24 6 2.5017 -1.4849 -7.6455 25 7 1.7817 -0.4940 -8.1276 26 14 3.3465 -2.6777 -8.8088 27 1 2.4344 -3.8122 -9.1027 28 1 3.6889 -1.9776 -10.0728 29 1 4.5875 -3.1915 -8.1756 30 1 -0.3633 0.4966 0.8996 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3633 -1.0275 -0.0197 33 1 0.0909 -0.7413 2.0495 34 1 3.5199 -0.9919 3.2030 35 1 4.1027 -1.2279 5.6174 36 1 3.1270 -2.6618 1.2797 37 1 1.4452 -2.7736 0.6604 38 1 2.7089 -2.7081 -1.3922 39 1 3.9094 -1.5672 -0.7146 40 1 3.4438 -1.1952 -3.5210 41 1 2.0003 -2.2365 -3.5020 42 1 1.6895 -0.3834 -9.0867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090203240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:32 Heat of formation + Delta-G solvation = 52.772031 kcal Electronic energy + Delta-G solvation = -26367.126367 eV Core-core repulsion = 22473.947387 eV Total energy + Delta-G solvation = -3893.178980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17877 -41.31169 -39.19691 -37.83413 -36.53735 -34.57418 -34.19008 -33.40164 -32.16623 -31.35221 -29.65467 -27.64711 -27.25695 -25.87267 -25.07183 -24.02835 -21.85629 -20.78550 -20.22626 -19.57390 -19.36273 -18.37570 -18.01450 -17.06314 -16.87285 -16.69620 -16.47597 -16.11596 -15.79572 -15.58826 -15.34341 -14.81224 -14.72459 -14.56414 -14.46145 -14.34069 -14.07059 -13.90217 -13.80435 -13.63290 -13.24816 -13.14833 -13.10595 -12.89872 -12.84429 -12.59367 -12.57427 -12.25203 -11.82700 -11.72033 -11.57333 -11.24493 -11.13286 -10.85891 -10.67020 -10.25521 -9.71306 -9.17785 -8.65842 -8.33734 -6.11763 -0.38812 -0.11492 1.22881 1.37619 1.43381 1.45477 1.55540 1.60352 1.75454 1.76630 2.17000 2.28690 2.51578 2.74068 3.00815 3.17874 3.34584 3.47242 3.53128 3.56964 3.75751 3.88182 3.89664 4.02294 4.15594 4.26052 4.30057 4.30937 4.47190 4.48616 4.52888 4.68130 4.79117 4.84317 4.92813 4.98345 5.05745 5.18728 5.24721 5.42911 5.45498 5.82920 6.20635 6.26471 6.31514 6.39846 7.07921 7.16284 7.63791 8.75313 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.001742 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.275983 B =16073.159670 C =16617.528748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 H 0.081 0.919 4 C 0.152 3.848 5 H 0.142 0.858 6 N -0.689 5.689 7 C 0.360 3.640 8 C -0.163 4.163 9 C -0.019 4.019 10 C 0.062 3.938 11 C 0.299 3.701 12 N -0.433 5.433 13 N -0.186 5.186 14 N -0.330 5.330 15 C -0.136 4.136 16 C 0.088 3.912 17 N -0.612 5.612 18 C 0.549 3.451 19 O -0.561 6.561 20 C -0.120 4.120 21 S -0.153 6.153 22 C -0.545 4.545 23 H 0.084 0.916 24 C 0.014 3.986 25 N -0.912 5.912 26 Si 0.997 3.003 27 H -0.269 1.269 28 H -0.279 1.279 29 H -0.256 1.256 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.415 0.585 34 H 0.199 0.801 35 H 0.197 0.803 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -5.244 25.243 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.024 3.976 3 H 0.099 0.901 4 C 0.046 3.954 5 H 0.159 0.841 6 N -0.321 5.321 7 C 0.118 3.882 8 C -0.196 4.196 9 C -0.047 4.047 10 C -0.090 4.090 11 C -0.019 4.019 12 N -0.111 5.111 13 N -0.032 5.032 14 N -0.183 5.183 15 C -0.175 4.175 16 C -0.034 4.034 17 N -0.348 5.348 18 C 0.337 3.663 19 O -0.439 6.439 20 C -0.271 4.271 21 S 0.074 5.926 22 C -0.693 4.693 23 H 0.102 0.898 24 C -0.191 4.191 25 N -0.548 5.548 26 Si 0.819 3.181 27 H -0.194 1.194 28 H -0.205 1.205 29 H -0.180 1.180 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.255 0.745 34 H 0.216 0.784 35 H 0.214 0.786 36 H 0.146 0.854 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.647 -3.836 26.516 27.381 hybrid contribution 1.421 -1.271 -1.689 2.547 sum 7.068 -5.107 24.827 26.313 Atomic orbital electron populations 1.22106 0.95367 1.02656 1.02769 1.21699 0.94832 0.96631 0.84441 0.90146 1.22202 0.91621 0.96725 0.84891 0.84090 1.44774 1.10760 1.75837 1.00763 1.20396 0.92015 0.88474 0.87340 1.22250 0.95271 1.03946 0.98115 1.22456 1.01329 0.89927 0.91039 1.17846 0.93095 1.10585 0.87493 1.24733 0.92916 0.92857 0.91398 1.81309 1.08521 1.09496 1.11754 1.73088 1.17715 1.04340 1.08019 1.73167 1.29455 1.21109 0.94603 1.23342 1.03882 0.96067 0.94225 1.22713 0.96001 0.88459 0.96215 1.48398 1.51446 1.31567 1.03352 1.19701 0.79786 0.84071 0.82736 1.90697 1.39531 1.30083 1.83574 1.23314 1.04823 1.02845 0.96156 1.85613 1.68674 1.42244 0.96044 1.23198 1.36539 1.15896 0.93646 0.89792 1.26106 0.95803 0.97792 0.99356 1.70182 1.39159 1.31350 1.14114 0.84976 0.78741 0.77535 0.76881 1.19443 1.20476 1.17979 0.89415 0.93716 0.91701 0.74459 0.78436 0.78556 0.85363 0.90406 0.89897 0.88161 0.87292 0.87661 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 7.93 71.98 0.57 -2.55 16 2 C 0.13 1.96 3.48 45.34 0.16 2.12 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.15 0.81 2.90 46.18 0.13 0.95 16 5 H 0.14 -0.11 6.38 -2.39 -0.02 -0.13 16 6 N -0.69 -5.21 5.05 -318.54 -1.61 -6.81 16 7 C 0.36 3.30 7.74 133.20 1.03 4.33 16 8 C -0.16 -0.37 9.30 22.61 0.21 -0.16 16 9 C -0.02 -0.06 9.91 22.74 0.23 0.17 16 10 C 0.06 0.74 6.67 40.71 0.27 1.01 16 11 C 0.30 4.58 15.57 88.33 1.38 5.95 16 12 N -0.43 -8.64 18.54 19.00 0.35 -8.29 16 13 N -0.19 -3.30 11.44 -51.75 -0.59 -3.89 16 14 N -0.33 -5.42 11.54 -55.12 -0.64 -6.06 16 15 C -0.14 -0.58 6.77 31.99 0.22 -0.37 16 16 C 0.09 0.92 6.69 86.85 0.58 1.50 16 17 N -0.61 -12.60 3.08 -788.05 -2.43 -15.03 16 18 C 0.55 18.46 7.65 87.66 0.67 19.13 16 19 O -0.56 -24.28 14.77 -3.03 -0.04 -24.33 16 20 C -0.12 -4.41 5.16 71.24 0.37 -4.05 16 21 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 22 C -0.55 -30.02 9.50 67.95 0.65 -29.38 16 23 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 24 C 0.01 0.79 5.49 84.86 0.47 1.25 16 25 N -0.91 -54.86 13.22 21.65 0.29 -54.57 16 26 Si 1.00 42.17 29.55 68.60 2.03 44.20 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 28 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 29 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 30 H 0.09 1.19 6.76 -2.39 -0.02 1.17 16 31 H 0.04 1.22 6.77 -2.39 -0.02 1.21 16 32 H 0.06 1.12 8.03 -2.38 -0.02 1.10 16 33 H 0.41 4.01 5.99 -92.71 -0.55 3.45 16 34 H 0.20 -1.13 6.27 -2.91 -0.02 -1.15 16 35 H 0.20 -0.87 8.06 -2.91 -0.02 -0.89 16 36 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.97 7.48 -2.39 -0.02 0.95 16 39 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 41 H 0.11 3.49 7.85 -2.39 -0.02 3.47 16 42 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -84.84 374.25 3.65 -81.19 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 0.53 Total: 3.01 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.92 Total: -0.08 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.63 Total: -94.66 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.04 Total: -24.33 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -84.84 3.65 -81.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090203240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.964 kcal (2) G-P(sol) polarization free energy of solvation -84.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds