Wall clock time and date at job start Wed Apr 1 2020 05:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.91651 * 2 1 4 4 C 1.55121 * 111.16200 * 236.07369 * 2 1 3 5 5 N 1.47435 * 104.94221 * 205.13429 * 4 2 1 6 6 C 1.34773 * 125.64698 * 204.03828 * 5 4 2 7 7 O 1.21285 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99881 * 179.97438 * 6 5 4 9 9 S 1.81007 * 109.47253 * 179.97438 * 8 6 5 10 10 C 1.76200 * 100.00003 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00269 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99737 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00059 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99875 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47031 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47101 * 120.00063 * 14 12 10 17 17 H 1.48497 * 109.46880 * 240.00203 * 14 12 10 18 18 C 1.47022 * 108.70342 * 24.00271 * 5 4 2 19 19 C 1.54326 * 107.27045 * 358.94015 * 18 5 4 20 20 H 1.09001 * 110.72094 * 96.35080 * 19 18 5 21 21 N 1.46504 * 110.71980 * 219.44425 * 19 18 5 22 22 C 1.38556 * 119.99739 * 271.15555 * 21 19 18 23 23 C 1.39752 * 119.98679 * 0.02562 * 22 21 19 24 24 N 1.31547 * 120.03407 * 179.97438 * 23 22 21 25 25 C 1.33305 * 119.99505 * 0.02562 * 24 23 22 26 26 C 1.43197 * 120.02032 * 179.97438 * 25 24 23 27 27 N 8.87820 * 95.14252 * 107.73568 * 2 1 3 28 28 C 1.39515 * 119.95910 * 359.97438 * 25 24 23 29 29 N 1.32034 * 119.96895 * 0.02562 * 28 25 24 30 30 H 1.09001 * 109.47127 * 296.09992 * 1 2 3 31 31 H 1.09008 * 109.47031 * 56.09553 * 1 2 3 32 32 H 1.09001 * 109.47332 * 176.09221 * 1 2 3 33 33 H 1.08993 * 110.42317 * 86.20382 * 4 2 1 34 34 H 1.09006 * 110.20873 * 323.95201 * 4 2 1 35 35 H 1.08998 * 109.47588 * 299.99679 * 8 6 5 36 36 H 1.08995 * 109.47185 * 60.00177 * 8 6 5 37 37 H 0.97002 * 120.00207 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.87893 * 239.52797 * 18 5 4 39 39 H 1.08994 * 109.88263 * 118.35722 * 18 5 4 40 40 H 0.97002 * 119.99491 * 91.16149 * 21 19 18 41 41 H 1.08005 * 119.98093 * 359.97438 * 23 22 21 42 42 H 1.07998 * 120.01652 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4299 -1.2474 -0.7705 6 6 4.4515 -1.5677 -1.5890 7 8 4.3074 -1.5055 -2.7917 8 6 5.7729 -2.0032 -1.0100 9 16 6.9316 -2.3618 -2.3535 10 6 8.3488 -2.8320 -1.4180 11 1 8.3077 -2.8323 -0.3388 12 6 9.5177 -3.2029 -2.0681 13 7 9.5676 -3.2031 -3.3834 14 14 11.0199 -3.7020 -1.0763 15 1 10.7067 -3.6176 0.3729 16 1 11.3998 -5.0957 -1.4207 17 1 12.1475 -2.7890 -1.3926 18 6 3.4672 -1.2782 0.6989 19 6 2.0861 -0.8080 1.2022 20 1 1.4450 -1.6614 1.4229 21 7 2.2287 0.0495 2.3815 22 6 2.2503 -0.5123 3.6479 23 6 2.1367 -1.8969 3.7999 24 7 2.1577 -2.4312 5.0017 25 6 2.2868 -1.6518 6.0754 26 6 2.3092 -2.2329 7.3840 27 7 2.3258 -2.6936 8.4222 28 6 2.4002 -0.2696 5.9235 29 7 2.3790 0.2651 4.7164 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8530 32 1 -0.3634 -1.0253 -0.0700 33 1 2.1642 -0.1733 -2.0837 34 1 1.4546 -1.6695 -1.4035 35 1 6.1761 -1.2063 -0.3851 36 1 5.6277 -2.8995 -0.4070 37 1 10.3846 -3.4620 -3.8377 38 1 4.2434 -0.6057 1.0641 39 1 3.6612 -2.2938 1.0436 40 1 2.3078 1.0105 2.2757 41 1 2.0317 -2.5285 2.9301 42 1 2.5053 0.3627 6.7927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090961620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:29 Heat of formation + Delta-G solvation = 58.684837 kcal Electronic energy + Delta-G solvation = -26488.486392 eV Core-core repulsion = 22595.563811 eV Total energy + Delta-G solvation = -3892.922581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75521 -40.27598 -38.23863 -37.04455 -35.75801 -34.57574 -33.20776 -32.47176 -31.12663 -29.60167 -28.84821 -26.33243 -25.50874 -25.47101 -25.04441 -22.82150 -21.17937 -20.07318 -19.57221 -18.58065 -18.20311 -17.71869 -16.69657 -16.65299 -15.81503 -15.65209 -15.43147 -15.31165 -14.84234 -14.71605 -14.34683 -14.18568 -13.96956 -13.75997 -13.53124 -13.35416 -13.21188 -13.16572 -12.81512 -12.62104 -12.46014 -12.23618 -12.15588 -11.96834 -11.76263 -11.59885 -11.27096 -11.09973 -11.06276 -10.82496 -10.79182 -9.85628 -9.78551 -9.57179 -9.11472 -8.73895 -8.55243 -8.29802 -6.56139 -6.26149 -3.97402 0.03593 0.55586 2.10863 2.14493 2.43858 2.78108 2.91885 3.13171 3.19096 3.22788 3.28441 3.38284 3.50943 3.68998 3.75705 3.86501 3.98731 4.10473 4.16031 4.27928 4.52524 4.54830 4.77927 4.86115 4.88962 4.91207 5.09256 5.14522 5.23828 5.27005 5.31580 5.46546 5.50320 5.57988 5.62501 5.71305 5.81296 6.01402 6.04721 6.19255 6.63676 6.75768 7.07091 7.23622 7.44558 7.55945 8.31088 8.39769 9.19572 10.81302 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008834 B = 0.002639 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.975820 B =10607.612824 C =13346.578461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.095 0.905 4 C 0.112 3.888 5 N -0.626 5.626 6 C 0.551 3.449 7 O -0.510 6.510 8 C -0.148 4.148 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.280 1.280 18 C 0.085 3.915 19 C 0.136 3.864 20 H 0.110 0.890 21 N -0.686 5.686 22 C 0.385 3.615 23 C 0.007 3.993 24 N -0.364 5.364 25 C 0.056 3.944 26 C 0.278 3.722 27 N -0.398 5.398 28 C 0.171 3.829 29 N -0.502 5.502 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.415 0.585 41 H 0.177 0.823 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.957 8.931 13.881 26.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.364 5.364 6 C 0.340 3.660 7 O -0.383 6.383 8 C -0.298 4.298 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.040 4.040 19 C 0.030 3.970 20 H 0.127 0.873 21 N -0.316 5.316 22 C 0.143 3.857 23 C -0.167 4.167 24 N -0.079 5.079 25 C -0.085 4.085 26 C -0.039 4.039 27 N -0.075 5.075 28 C 0.006 3.994 29 N -0.223 5.223 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.253 0.747 41 H 0.194 0.806 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -20.973 8.132 13.299 26.132 hybrid contribution 1.298 0.136 1.597 2.063 sum -19.675 8.268 14.896 26.026 Atomic orbital electron populations 1.21728 0.92711 1.02882 1.02699 1.22688 0.96994 0.99945 0.93094 0.88716 1.22270 0.83437 0.98293 0.97085 1.48391 1.12469 1.69673 1.05869 1.20055 0.83912 0.76007 0.86057 1.90729 1.82124 1.51294 1.14177 1.23518 0.96223 1.03882 1.06223 1.85410 1.05214 1.87193 1.05515 1.22881 0.98038 1.52595 0.94788 0.90877 1.24994 0.98499 0.94900 0.95162 1.70021 1.28069 1.44986 1.07142 0.86117 0.81303 0.78334 0.79760 1.19593 1.20504 1.20540 1.22494 0.97392 1.02564 0.81549 1.22331 0.96358 0.94220 0.84087 0.87265 1.44520 1.75760 1.10419 1.00878 1.19628 0.88462 0.90589 0.87014 1.23238 1.05861 0.91849 0.95775 1.68116 1.03926 1.38064 0.97770 1.16929 1.12780 0.91124 0.87621 1.24627 0.93882 0.93678 0.91735 1.81280 1.08459 1.06230 1.11545 1.23438 0.89044 0.91775 0.95096 1.68132 1.18856 1.37595 0.97750 0.91891 0.91496 0.91793 0.89592 0.90940 0.89331 0.89210 0.92186 0.90357 0.90332 0.74723 0.80593 0.80273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.50 9.31 37.16 0.35 -0.15 16 2 C -0.11 -0.53 3.27 -88.35 -0.29 -0.81 16 3 H 0.09 0.45 8.00 -51.93 -0.42 0.03 16 4 C 0.11 0.97 6.39 -2.41 -0.02 0.96 16 5 N -0.63 -7.36 3.33 -170.38 -0.57 -7.93 16 6 C 0.55 9.66 7.87 -10.99 -0.09 9.58 16 7 O -0.51 -11.02 16.12 5.55 0.09 -10.93 16 8 C -0.15 -2.86 5.35 36.00 0.19 -2.66 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 10 C -0.53 -14.94 9.50 30.94 0.29 -14.64 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 14 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 C 0.09 0.69 6.24 -3.06 -0.02 0.67 16 19 C 0.14 0.65 2.40 -66.09 -0.16 0.49 16 20 H 0.11 0.36 6.38 -51.93 -0.33 0.03 16 21 N -0.69 -3.17 5.27 -52.02 -0.27 -3.44 16 22 C 0.39 2.41 7.66 -154.91 -1.19 1.23 16 23 C 0.01 0.04 10.39 -17.11 -0.18 -0.13 16 24 N -0.36 -3.17 10.41 -10.72 -0.11 -3.28 16 25 C 0.06 0.44 6.58 -84.83 -0.56 -0.12 16 26 C 0.28 2.60 15.56 -22.48 -0.35 2.25 16 27 N -0.40 -4.54 18.54 41.83 0.78 -3.77 16 28 C 0.17 1.03 10.92 -16.99 -0.19 0.84 16 29 N -0.50 -3.47 10.52 -11.93 -0.13 -3.59 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.24 8.14 -51.92 -0.42 -0.19 16 32 H 0.06 0.21 8.08 -51.93 -0.42 -0.21 16 33 H 0.09 0.86 8.04 -51.93 -0.42 0.45 16 34 H 0.07 0.57 7.99 -51.93 -0.41 0.16 16 35 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.41 1.66 8.66 -40.82 -0.35 1.30 16 41 H 0.18 0.80 6.23 -52.48 -0.33 0.47 16 42 H 0.18 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -36.22 382.08 -8.42 -44.65 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -5.18 Total: -4.24 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.29 Total: -0.55 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.43 Total: -47.04 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.22 -8.42 -44.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090961620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.331 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds