Wall clock time and date at job start Wed Apr 1 2020 05:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.91651 * 2 1 4 4 C 1.55121 * 111.16200 * 236.07369 * 2 1 3 5 5 N 1.47435 * 104.94221 * 205.13429 * 4 2 1 6 6 C 1.34773 * 125.64698 * 204.03828 * 5 4 2 7 7 O 1.21285 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99881 * 179.97438 * 6 5 4 9 9 S 1.81007 * 109.47253 * 179.97438 * 8 6 5 10 10 C 1.76200 * 100.00003 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00269 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99737 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00059 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99875 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47031 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47101 * 120.00063 * 14 12 10 17 17 H 1.48497 * 109.46880 * 240.00203 * 14 12 10 18 18 C 1.47022 * 108.70342 * 24.00271 * 5 4 2 19 19 C 1.54326 * 107.27045 * 358.94015 * 18 5 4 20 20 H 1.09001 * 110.72094 * 96.35080 * 19 18 5 21 21 N 1.46504 * 110.71980 * 219.44425 * 19 18 5 22 22 C 1.38556 * 119.99739 * 271.15555 * 21 19 18 23 23 C 1.39752 * 119.98679 * 0.02562 * 22 21 19 24 24 N 1.31547 * 120.03407 * 179.97438 * 23 22 21 25 25 C 1.33305 * 119.99505 * 0.02562 * 24 23 22 26 26 C 1.43197 * 120.02032 * 179.97438 * 25 24 23 27 27 N 8.87820 * 95.14252 * 107.73568 * 2 1 3 28 28 C 1.39515 * 119.95910 * 359.97438 * 25 24 23 29 29 N 1.32034 * 119.96895 * 0.02562 * 28 25 24 30 30 H 1.09001 * 109.47127 * 296.09992 * 1 2 3 31 31 H 1.09008 * 109.47031 * 56.09553 * 1 2 3 32 32 H 1.09001 * 109.47332 * 176.09221 * 1 2 3 33 33 H 1.08993 * 110.42317 * 86.20382 * 4 2 1 34 34 H 1.09006 * 110.20873 * 323.95201 * 4 2 1 35 35 H 1.08998 * 109.47588 * 299.99679 * 8 6 5 36 36 H 1.08995 * 109.47185 * 60.00177 * 8 6 5 37 37 H 0.97002 * 120.00207 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.87893 * 239.52797 * 18 5 4 39 39 H 1.08994 * 109.88263 * 118.35722 * 18 5 4 40 40 H 0.97002 * 119.99491 * 91.16149 * 21 19 18 41 41 H 1.08005 * 119.98093 * 359.97438 * 23 22 21 42 42 H 1.07998 * 120.01652 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4299 -1.2474 -0.7705 6 6 4.4515 -1.5677 -1.5890 7 8 4.3074 -1.5055 -2.7917 8 6 5.7729 -2.0032 -1.0100 9 16 6.9316 -2.3618 -2.3535 10 6 8.3488 -2.8320 -1.4180 11 1 8.3077 -2.8323 -0.3388 12 6 9.5177 -3.2029 -2.0681 13 7 9.5676 -3.2031 -3.3834 14 14 11.0199 -3.7020 -1.0763 15 1 10.7067 -3.6176 0.3729 16 1 11.3998 -5.0957 -1.4207 17 1 12.1475 -2.7890 -1.3926 18 6 3.4672 -1.2782 0.6989 19 6 2.0861 -0.8080 1.2022 20 1 1.4450 -1.6614 1.4229 21 7 2.2287 0.0495 2.3815 22 6 2.2503 -0.5123 3.6479 23 6 2.1367 -1.8969 3.7999 24 7 2.1577 -2.4312 5.0017 25 6 2.2868 -1.6518 6.0754 26 6 2.3092 -2.2329 7.3840 27 7 2.3258 -2.6936 8.4222 28 6 2.4002 -0.2696 5.9235 29 7 2.3790 0.2651 4.7164 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8530 32 1 -0.3634 -1.0253 -0.0700 33 1 2.1642 -0.1733 -2.0837 34 1 1.4546 -1.6695 -1.4035 35 1 6.1761 -1.2063 -0.3851 36 1 5.6277 -2.8995 -0.4070 37 1 10.3846 -3.4620 -3.8377 38 1 4.2434 -0.6057 1.0641 39 1 3.6612 -2.2938 1.0436 40 1 2.3078 1.0105 2.2757 41 1 2.0317 -2.5285 2.9301 42 1 2.5053 0.3627 6.7927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090961620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:29 Heat of formation + Delta-G solvation = 32.849774 kcal Electronic energy + Delta-G solvation = -26489.606685 eV Core-core repulsion = 22595.563811 eV Total energy + Delta-G solvation = -3894.042874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.26518 -41.17937 -39.25836 -37.79881 -36.44799 -35.13959 -34.59587 -33.95086 -31.67135 -30.92718 -29.49642 -27.75970 -26.90733 -26.00568 -25.65955 -23.48819 -21.67357 -20.79688 -20.64660 -19.60435 -19.09034 -18.67128 -17.93454 -17.39517 -16.89522 -16.67630 -16.37341 -16.28374 -15.96224 -15.85755 -15.32374 -14.97750 -14.81128 -14.59472 -14.49438 -14.20971 -14.11100 -14.05064 -13.86375 -13.52923 -13.35929 -13.16228 -13.00712 -12.92605 -12.76467 -12.67958 -12.61205 -12.27920 -12.06826 -11.74728 -11.69523 -11.33712 -11.16820 -10.96981 -10.28785 -10.28604 -9.74064 -9.04979 -8.68216 -8.35982 -6.13885 -0.48474 0.06753 1.22467 1.40361 1.42822 1.46030 1.53512 1.55263 1.67041 1.81281 2.12573 2.26042 2.54655 2.82591 2.98476 3.12781 3.26613 3.31884 3.42167 3.45192 3.60181 3.82456 3.85731 4.04086 4.06675 4.22310 4.26365 4.43708 4.49213 4.51553 4.62882 4.65553 4.73493 4.89016 4.97091 5.07409 5.21064 5.28063 5.41191 5.45272 5.56596 6.15652 6.18894 6.27891 6.31263 6.44172 6.76833 7.05829 7.09659 8.73387 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008834 B = 0.002639 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.975820 B =10607.612824 C =13346.578461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.100 0.900 4 C 0.104 3.896 5 N -0.613 5.613 6 C 0.549 3.451 7 O -0.563 6.563 8 C -0.122 4.122 9 S -0.149 6.149 10 C -0.544 4.544 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.074 3.926 19 C 0.149 3.851 20 H 0.135 0.865 21 N -0.673 5.673 22 C 0.390 3.610 23 C 0.007 3.993 24 N -0.390 5.390 25 C 0.036 3.964 26 C 0.300 3.700 27 N -0.444 5.444 28 C 0.185 3.815 29 N -0.514 5.514 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.271 0.729 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.421 0.579 41 H 0.197 0.803 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.070 9.660 15.978 28.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.118 0.882 4 C -0.018 4.018 5 N -0.348 5.348 6 C 0.337 3.663 7 O -0.441 6.441 8 C -0.273 4.273 9 S 0.078 5.922 10 C -0.692 4.692 11 H 0.099 0.901 12 C -0.190 4.190 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.181 1.181 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.050 4.050 19 C 0.043 3.957 20 H 0.152 0.848 21 N -0.302 5.302 22 C 0.146 3.854 23 C -0.168 4.168 24 N -0.104 5.104 25 C -0.103 4.103 26 C -0.016 4.016 27 N -0.122 5.122 28 C 0.021 3.979 29 N -0.236 5.236 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.260 0.740 41 H 0.214 0.786 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -22.134 8.890 15.460 28.425 hybrid contribution 1.510 -0.008 0.915 1.766 sum -20.625 8.882 16.375 27.792 Atomic orbital electron populations 1.21716 0.91002 1.03541 1.03325 1.22590 0.98041 0.99449 0.90943 0.88203 1.22558 0.81834 0.99109 0.98325 1.48226 1.12180 1.67142 1.07290 1.19675 0.84484 0.76382 0.85731 1.90707 1.83027 1.54063 1.16318 1.23316 0.95545 1.05134 1.03300 1.85571 1.07984 1.87721 1.10940 1.23196 0.98440 1.52416 0.95110 0.90061 1.26095 1.02010 0.94672 0.96270 1.70179 1.29132 1.46178 1.09172 0.84936 0.76729 0.77962 0.78526 1.18136 1.19919 1.19932 1.22841 0.99660 1.03557 0.78945 1.22284 0.94531 0.94961 0.83943 0.84763 1.44457 1.74834 1.10688 1.00246 1.19717 0.87728 0.90586 0.87326 1.23553 1.05248 0.92258 0.95699 1.68049 1.04742 1.39052 0.98584 1.16937 1.14712 0.91841 0.86787 1.24854 0.92488 0.92577 0.91725 1.81291 1.10399 1.07600 1.12908 1.23806 0.87175 0.91217 0.95735 1.68216 1.19596 1.37746 0.98086 0.90751 0.91483 0.91092 0.91344 0.89709 0.87856 0.87515 0.91972 0.90477 0.89201 0.74017 0.78625 0.77564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.45 9.31 71.98 0.67 0.22 16 2 C -0.09 -0.59 3.27 -9.33 -0.03 -0.62 16 3 H 0.10 0.61 8.00 -2.39 -0.02 0.60 16 4 C 0.10 1.60 6.39 86.93 0.56 2.16 16 5 N -0.61 -13.40 3.33 -811.35 -2.70 -16.10 16 6 C 0.55 19.20 7.87 87.66 0.69 19.89 16 7 O -0.56 -25.12 16.12 -3.05 -0.05 -25.17 16 8 C -0.12 -4.66 5.35 71.23 0.38 -4.28 16 9 S -0.15 -8.14 20.57 -56.49 -1.16 -9.30 16 10 C -0.54 -30.60 9.50 67.96 0.65 -29.96 16 11 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 12 C 0.01 0.81 5.49 84.86 0.47 1.28 16 13 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 14 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 15 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 C 0.07 0.96 6.24 86.73 0.54 1.51 16 19 C 0.15 0.83 2.40 46.18 0.11 0.94 16 20 H 0.13 0.22 6.38 -2.39 -0.02 0.20 16 21 N -0.67 -3.62 5.27 -318.48 -1.68 -5.30 16 22 C 0.39 3.56 7.66 133.26 1.02 4.58 16 23 C 0.01 0.07 10.39 85.10 0.88 0.95 16 24 N -0.39 -5.99 10.41 -187.83 -1.96 -7.95 16 25 C 0.04 0.51 6.58 40.47 0.27 0.78 16 26 C 0.30 5.39 15.56 88.33 1.37 6.76 16 27 N -0.44 -10.09 18.54 19.00 0.35 -9.74 16 28 C 0.18 1.76 10.92 84.97 0.93 2.69 16 29 N -0.51 -5.55 10.52 -191.65 -2.02 -7.57 16 30 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.07 0.18 8.08 -2.39 -0.02 0.16 16 33 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 34 H 0.08 1.15 7.99 -2.38 -0.02 1.13 16 35 H 0.10 3.62 8.14 -2.40 -0.02 3.60 16 36 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.08 1.09 8.03 -2.38 -0.02 1.07 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.42 1.74 8.66 -92.71 -0.80 0.94 16 41 H 0.20 1.00 6.23 -2.91 -0.02 0.98 16 42 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -82.91 382.08 1.88 -81.03 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 0.27 Total: 2.97 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 8.50 Total: 6.90 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -7.71 Total: -101.70 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -82.91 1.88 -81.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090961620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.878 kcal (2) G-P(sol) polarization free energy of solvation -82.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds