Wall clock time and date at job start Wed Apr 1 2020 04:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46786 * 300.00136 * 3 2 1 6 6 H 1.48494 * 109.47240 * 59.99764 * 3 2 1 7 7 C 1.38813 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99528 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99880 * 179.97438 * 9 7 2 11 11 C 1.53780 * 113.61578 * 154.99727 * 10 9 7 12 12 C 1.53778 * 87.08158 * 89.11802 * 11 10 9 13 13 C 1.53002 * 113.61765 * 139.97812 * 12 11 10 14 14 N 1.46494 * 109.47001 * 176.52930 * 13 12 11 15 15 C 1.34784 * 119.99635 * 180.02562 * 14 13 12 16 16 O 1.21623 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.47346 * 119.99808 * 179.97438 * 15 14 13 18 18 C 1.36296 * 122.54196 * 179.97438 * 17 15 14 19 19 S 1.71013 * 109.01923 * 179.97438 * 18 17 15 20 20 C 1.75969 * 90.63207 * 0.02562 * 19 18 17 21 21 C 1.47379 * 125.23075 * 180.02562 * 20 19 18 22 22 N 1.31606 * 125.85381 * 179.67131 * 21 20 19 23 23 C 1.33634 * 109.24256 * 179.86677 * 22 21 20 24 24 C 1.34996 * 108.42247 * 0.38907 * 23 22 21 25 25 N 1.36591 * 125.86293 * 359.96821 * 21 20 19 26 26 H 0.96993 * 126.50170 * 359.96905 * 25 21 20 27 27 N 1.29950 * 109.53143 * 359.75658 * 20 19 18 28 28 C 1.53789 * 87.17323 * 25.38949 * 12 11 10 29 29 H 0.96999 * 120.00310 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00214 * 359.97438 * 9 7 2 31 31 H 1.09000 * 112.85004 * 23.80105 * 10 9 7 32 32 H 1.08999 * 113.61428 * 334.56784 * 11 10 9 33 33 H 1.09008 * 113.61493 * 203.66673 * 11 10 9 34 34 H 1.09004 * 113.61322 * 270.80517 * 12 11 10 35 35 H 1.09005 * 109.46767 * 56.52996 * 13 12 11 36 36 H 1.09002 * 109.47113 * 296.53336 * 13 12 11 37 37 H 0.96995 * 120.00292 * 0.27801 * 14 13 12 38 38 H 1.08005 * 125.49119 * 359.97438 * 18 17 15 39 39 H 1.08007 * 125.78890 * 180.12495 * 23 22 21 40 40 H 1.07999 * 126.47368 * 179.79527 * 24 23 22 41 41 H 1.08999 * 113.61160 * 89.15828 * 28 12 11 42 42 H 1.08991 * 113.61631 * 220.06007 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.2603 -4.8287 0.5961 12 6 0.7205 -5.0791 -0.8219 13 6 0.6198 -6.5616 -1.1866 14 7 0.0212 -6.6977 -2.5167 15 6 -0.1675 -7.9217 -3.0487 16 8 0.1587 -8.9131 -2.4242 17 6 -0.7700 -8.0587 -4.3863 18 6 -0.9839 -9.2699 -4.9735 19 16 -1.6944 -9.0267 -6.5099 20 6 -1.6617 -7.2836 -6.2707 21 6 -2.1469 -6.2834 -7.2383 22 7 -2.1340 -4.9783 -7.0698 23 6 -2.6484 -4.3891 -8.1533 24 6 -3.0059 -5.3497 -9.0320 25 7 -2.6923 -6.5521 -8.4615 26 1 -2.8306 -7.4294 -8.8514 27 7 -1.1493 -7.0143 -5.1073 28 6 1.9979 -4.4014 -1.3455 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.0656 -3.5637 0.4059 32 1 0.4939 -4.5189 1.3066 33 1 1.8872 -5.6366 0.9736 34 1 -0.1910 -4.5251 -1.0463 35 1 -0.0031 -7.0745 -0.4536 36 1 1.6162 -7.0036 -1.1895 37 1 -0.2359 -5.9070 -3.0161 38 1 -0.7434 -10.2288 -4.5387 39 1 -2.7629 -3.3251 -8.2994 40 1 -3.4545 -5.1972 -10.0025 41 1 2.8268 -5.0922 -1.4998 42 1 1.8262 -3.7472 -2.2002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091154884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:30 Heat of formation + Delta-G solvation = 106.034249 kcal Electronic energy + Delta-G solvation = -26270.071186 eV Core-core repulsion = 22379.201829 eV Total energy + Delta-G solvation = -3890.869357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38699 -40.62339 -39.02306 -38.18532 -34.64983 -33.13208 -33.05283 -32.05592 -30.14780 -29.31006 -27.87099 -25.87557 -24.97699 -23.97965 -23.22788 -22.18210 -21.55293 -20.97664 -19.74144 -19.45810 -18.39611 -17.98640 -17.34301 -16.81430 -15.99667 -15.92060 -15.45246 -15.30842 -14.85730 -14.60348 -14.41099 -14.33001 -14.01419 -13.92590 -13.62781 -13.48261 -13.10857 -12.83368 -12.49260 -12.20266 -11.84509 -11.33468 -10.98170 -10.81046 -10.66397 -10.49117 -10.46210 -10.41695 -10.35805 -10.25631 -10.07659 -9.80040 -9.78635 -9.62925 -9.41371 -8.96268 -8.82322 -8.50817 -6.93161 -5.74267 -3.03128 -0.22927 0.51008 0.97221 1.21026 1.95566 2.22130 2.83061 3.18479 3.24495 3.46354 3.51913 3.54273 3.60190 4.12567 4.52882 4.61430 4.75535 4.77328 4.89668 5.01377 5.13295 5.14317 5.28983 5.36512 5.51858 5.55665 5.70385 5.76227 5.92406 6.01882 6.17474 6.23004 6.28030 6.43305 6.45237 6.63318 6.66019 6.84495 6.95489 6.98905 7.12817 7.54845 7.59732 7.75384 8.13516 8.44777 9.55425 10.13545 10.47736 11.48251 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.002472 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.771981 B =11325.133374 C =13940.722836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.130 3.870 14 N -0.700 5.700 15 C 0.590 3.410 16 O -0.541 6.541 17 C 0.021 3.979 18 C -0.204 4.204 19 S 0.178 5.822 20 C 0.123 3.877 21 C 0.255 3.745 22 N -0.423 5.423 23 C -0.020 4.020 24 C -0.026 4.026 25 N -0.560 5.560 26 H 0.421 0.579 27 N -0.394 5.394 28 C -0.169 4.169 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.415 0.585 38 H 0.198 0.802 39 H 0.182 0.818 40 H 0.189 0.811 41 H 0.067 0.933 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 -21.192 -20.302 30.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.056 3.944 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.007 3.993 14 N -0.350 5.350 15 C 0.372 3.628 16 O -0.419 6.419 17 C -0.116 4.116 18 C -0.347 4.347 19 S 0.434 5.566 20 C -0.155 4.155 21 C -0.007 4.007 22 N -0.144 5.144 23 C -0.171 4.171 24 C -0.162 4.162 25 N -0.166 5.166 26 H 0.259 0.741 27 N -0.110 5.110 28 C -0.210 4.210 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.251 0.749 38 H 0.215 0.785 39 H 0.199 0.801 40 H 0.206 0.794 41 H 0.085 0.915 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.997 -21.377 -19.691 29.894 hybrid contribution -0.112 0.507 -0.490 0.714 sum -7.109 -20.870 -20.181 29.889 Atomic orbital electron populations 1.69672 1.05109 1.25615 1.57559 1.24765 0.95533 0.97757 1.02880 0.86109 0.78799 0.84079 0.77156 1.20526 1.21839 1.21890 1.19329 0.91119 0.83977 1.42746 0.90976 1.42182 1.05724 0.99441 1.87078 1.21084 0.95034 0.85593 0.92733 1.23440 1.00474 0.99690 0.95062 1.22722 0.99829 0.92769 0.98556 1.21573 0.98047 0.97424 0.82252 1.45938 1.61489 1.08077 1.19534 1.17024 0.78510 0.84072 0.83190 1.90808 1.52178 1.37616 1.61270 1.20594 1.05738 0.87117 0.98192 1.26874 1.04841 1.04282 0.98734 1.83596 1.55045 1.03285 1.14665 1.23875 1.04794 0.92683 0.94179 1.19452 1.05324 0.90419 0.85507 1.70591 1.16541 1.02262 1.24984 1.22638 1.03522 1.00491 0.90469 1.23020 1.07500 0.83971 1.01706 1.43346 1.48165 1.09907 1.15159 0.74078 1.66775 1.09629 1.31637 1.02942 1.23919 0.95576 0.99659 1.01831 0.93513 0.78070 0.91977 0.91296 0.90471 0.88710 0.91517 0.91297 0.74895 0.78507 0.80129 0.79444 0.91468 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.71 -17.92 5.31 -52.55 -0.28 -18.20 16 10 C 0.17 3.39 4.57 -67.03 -0.31 3.09 16 11 C -0.15 -2.45 7.39 -25.92 -0.19 -2.64 16 12 C -0.12 -1.93 3.62 -89.80 -0.33 -2.26 16 13 C 0.13 1.89 5.50 -4.04 -0.02 1.87 16 14 N -0.70 -10.25 5.55 -61.41 -0.34 -10.59 16 15 C 0.59 8.76 7.80 -12.55 -0.10 8.66 16 16 O -0.54 -9.08 16.68 5.26 0.09 -9.00 16 17 C 0.02 0.27 6.68 -84.59 -0.56 -0.30 16 18 C -0.20 -1.93 10.63 30.03 0.32 -1.61 16 19 S 0.18 1.19 23.17 -107.50 -2.49 -1.30 16 20 C 0.12 1.32 7.47 -14.63 -0.11 1.21 16 21 C 0.25 2.70 8.05 -154.61 -1.25 1.46 16 22 N -0.42 -5.55 11.28 -11.30 -0.13 -5.68 16 23 C -0.02 -0.18 11.84 -17.92 -0.21 -0.39 16 24 C -0.03 -0.15 12.03 -16.51 -0.20 -0.35 16 25 N -0.56 -3.46 6.22 -10.63 -0.07 -3.52 16 26 H 0.42 1.09 8.96 -40.82 -0.37 0.73 16 27 N -0.39 -5.26 10.07 -8.01 -0.08 -5.34 16 28 C -0.17 -3.00 7.44 -25.82 -0.19 -3.19 16 29 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.39 10.36 7.90 -40.82 -0.32 10.04 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.11 8.10 -51.92 -0.42 0.69 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 37 H 0.41 6.13 7.96 -40.82 -0.32 5.81 16 38 H 0.20 1.54 8.01 -52.48 -0.42 1.12 16 39 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.19 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -36.18 380.33 -10.43 -46.62 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.18 Total: 13.22 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -3.39 Total: -1.86 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -0.17 Total: -71.05 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.49 Total: -1.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.18 -10.43 -46.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091154884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.652 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds