Wall clock time and date at job start Wed Apr 1 2020 04:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46786 * 300.00136 * 3 2 1 6 6 H 1.48494 * 109.47240 * 59.99764 * 3 2 1 7 7 C 1.38813 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99528 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99880 * 179.97438 * 9 7 2 11 11 C 1.53780 * 113.61578 * 154.99727 * 10 9 7 12 12 C 1.53778 * 87.08158 * 89.11802 * 11 10 9 13 13 C 1.53002 * 113.61765 * 139.97812 * 12 11 10 14 14 N 1.46494 * 109.47001 * 176.52930 * 13 12 11 15 15 C 1.34784 * 119.99635 * 180.02562 * 14 13 12 16 16 O 1.21623 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.47346 * 119.99808 * 179.97438 * 15 14 13 18 18 C 1.36296 * 122.54196 * 179.97438 * 17 15 14 19 19 S 1.71013 * 109.01923 * 179.97438 * 18 17 15 20 20 C 1.75969 * 90.63207 * 0.02562 * 19 18 17 21 21 C 1.47379 * 125.23075 * 180.02562 * 20 19 18 22 22 N 1.31606 * 125.85381 * 179.67131 * 21 20 19 23 23 C 1.33634 * 109.24256 * 179.86677 * 22 21 20 24 24 C 1.34996 * 108.42247 * 0.38907 * 23 22 21 25 25 N 1.36591 * 125.86293 * 359.96821 * 21 20 19 26 26 H 0.96993 * 126.50170 * 359.96905 * 25 21 20 27 27 N 1.29950 * 109.53143 * 359.75658 * 20 19 18 28 28 C 1.53789 * 87.17323 * 25.38949 * 12 11 10 29 29 H 0.96999 * 120.00310 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00214 * 359.97438 * 9 7 2 31 31 H 1.09000 * 112.85004 * 23.80105 * 10 9 7 32 32 H 1.08999 * 113.61428 * 334.56784 * 11 10 9 33 33 H 1.09008 * 113.61493 * 203.66673 * 11 10 9 34 34 H 1.09004 * 113.61322 * 270.80517 * 12 11 10 35 35 H 1.09005 * 109.46767 * 56.52996 * 13 12 11 36 36 H 1.09002 * 109.47113 * 296.53336 * 13 12 11 37 37 H 0.96995 * 120.00292 * 0.27801 * 14 13 12 38 38 H 1.08005 * 125.49119 * 359.97438 * 18 17 15 39 39 H 1.08007 * 125.78890 * 180.12495 * 23 22 21 40 40 H 1.07999 * 126.47368 * 179.79527 * 24 23 22 41 41 H 1.08999 * 113.61160 * 89.15828 * 28 12 11 42 42 H 1.08991 * 113.61631 * 220.06007 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.2603 -4.8287 0.5961 12 6 0.7205 -5.0791 -0.8219 13 6 0.6198 -6.5616 -1.1866 14 7 0.0212 -6.6977 -2.5167 15 6 -0.1675 -7.9217 -3.0487 16 8 0.1587 -8.9131 -2.4242 17 6 -0.7700 -8.0587 -4.3863 18 6 -0.9839 -9.2699 -4.9735 19 16 -1.6944 -9.0267 -6.5099 20 6 -1.6617 -7.2836 -6.2707 21 6 -2.1469 -6.2834 -7.2383 22 7 -2.1340 -4.9783 -7.0698 23 6 -2.6484 -4.3891 -8.1533 24 6 -3.0059 -5.3497 -9.0320 25 7 -2.6923 -6.5521 -8.4615 26 1 -2.8306 -7.4294 -8.8514 27 7 -1.1493 -7.0143 -5.1073 28 6 1.9979 -4.4014 -1.3455 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.0656 -3.5637 0.4059 32 1 0.4939 -4.5189 1.3066 33 1 1.8872 -5.6366 0.9736 34 1 -0.1910 -4.5251 -1.0463 35 1 -0.0031 -7.0745 -0.4536 36 1 1.6162 -7.0036 -1.1895 37 1 -0.2359 -5.9070 -3.0161 38 1 -0.7434 -10.2288 -4.5387 39 1 -2.7629 -3.3251 -8.2994 40 1 -3.4545 -5.1972 -10.0025 41 1 2.8268 -5.0922 -1.4998 42 1 1.8262 -3.7472 -2.2002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091154884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:29 Heat of formation + Delta-G solvation = 78.412095 kcal Electronic energy + Delta-G solvation = -26271.268972 eV Core-core repulsion = 22379.201829 eV Total energy + Delta-G solvation = -3892.067143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.99091 -41.57215 -40.28425 -39.41886 -36.06942 -34.97312 -33.69171 -32.79408 -32.07320 -30.00092 -29.18711 -26.81856 -26.44479 -25.69766 -24.46542 -22.93676 -22.77106 -21.81130 -20.69488 -20.13894 -19.73737 -19.32342 -18.81945 -17.87481 -16.97554 -16.87473 -16.70778 -16.33008 -16.20123 -15.82411 -15.66369 -15.18046 -15.14678 -14.99879 -14.66559 -14.58009 -14.43492 -14.25194 -13.74392 -13.29972 -13.20984 -12.95385 -12.92288 -12.66362 -12.13376 -12.05175 -11.68902 -11.49934 -11.33326 -11.30590 -11.14418 -11.07410 -11.05598 -10.93403 -10.79781 -10.48388 -10.11072 -9.13269 -9.00096 -7.94778 -5.23550 -0.93571 -0.14583 0.25784 0.40840 1.26644 1.47272 1.48507 1.58570 1.66798 2.05214 2.15328 2.32990 2.56013 2.95796 3.36654 3.37982 3.70746 3.77505 3.80884 3.98493 3.99870 4.11488 4.13542 4.31322 4.35621 4.39766 4.50669 4.59930 4.71005 4.73911 4.91568 4.95136 4.97384 5.10177 5.22595 5.33994 5.44590 5.53035 5.64009 5.65720 6.09314 6.28618 6.29837 6.48689 6.97090 7.01402 7.33128 8.10378 8.32586 9.28905 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.002472 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.771981 B =11325.133374 C =13940.722836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.146 3.854 11 C -0.129 4.129 12 C -0.106 4.106 13 C 0.139 3.861 14 N -0.704 5.704 15 C 0.588 3.412 16 O -0.566 6.566 17 C -0.011 4.011 18 C -0.209 4.209 19 S 0.305 5.695 20 C 0.092 3.908 21 C 0.228 3.772 22 N -0.484 5.484 23 C -0.062 4.062 24 C 0.014 3.986 25 N -0.541 5.541 26 H 0.439 0.561 27 N -0.437 5.437 28 C -0.156 4.156 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.412 0.588 38 H 0.213 0.787 39 H 0.188 0.812 40 H 0.239 0.761 41 H 0.093 0.907 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 -23.592 -22.615 33.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.036 3.964 11 C -0.168 4.168 12 C -0.125 4.125 13 C 0.016 3.984 14 N -0.354 5.354 15 C 0.373 3.627 16 O -0.447 6.447 17 C -0.149 4.149 18 C -0.352 4.352 19 S 0.562 5.438 20 C -0.185 4.185 21 C -0.034 4.034 22 N -0.206 5.206 23 C -0.212 4.212 24 C -0.124 4.124 25 N -0.148 5.148 26 H 0.282 0.718 27 N -0.153 5.153 28 C -0.196 4.196 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.248 0.752 38 H 0.230 0.770 39 H 0.205 0.795 40 H 0.255 0.745 41 H 0.112 0.888 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.882 -23.846 -22.029 33.185 hybrid contribution -0.175 1.134 0.069 1.149 sum -7.057 -22.712 -21.959 32.370 Atomic orbital electron populations 1.69832 1.06658 1.26001 1.59582 1.25598 0.96412 1.01199 1.03777 0.85059 0.78270 0.79740 0.76614 1.18924 1.22168 1.21942 1.19721 0.91543 0.85158 1.40904 0.90453 1.42338 1.05327 1.00690 1.87534 1.21416 0.95220 0.84913 0.94893 1.23327 0.99920 0.98681 0.94899 1.22500 0.98201 0.93682 0.98107 1.21444 0.98612 0.95790 0.82546 1.45965 1.61617 1.08267 1.19509 1.17340 0.77921 0.83456 0.83999 1.90771 1.53512 1.38073 1.62296 1.20297 1.08342 0.88355 0.97876 1.27275 1.03566 1.03945 1.00428 1.83058 1.51586 0.98228 1.10969 1.24158 1.04893 0.95616 0.93835 1.19436 1.06965 0.89923 0.87078 1.70453 1.18380 1.04288 1.27490 1.23013 1.05405 1.01880 0.90925 1.23712 1.04023 0.82568 1.02048 1.43293 1.46721 1.11133 1.13698 0.71841 1.66707 1.11149 1.32994 1.04455 1.23764 0.97335 0.99324 0.99201 0.94038 0.79485 0.91784 0.92224 0.87072 0.90807 0.91032 0.90511 0.75243 0.76991 0.79459 0.74513 0.88836 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 4 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.24 -13.82 9.97 84.03 0.84 -12.98 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.72 -37.66 5.31 -320.17 -1.70 -39.36 16 10 C 0.15 5.90 4.57 45.58 0.21 6.11 16 11 C -0.13 -4.20 7.39 31.12 0.23 -3.97 16 12 C -0.11 -3.45 3.62 -10.27 -0.04 -3.49 16 13 C 0.14 3.99 5.50 86.38 0.47 4.47 16 14 N -0.70 -21.23 5.55 -466.43 -2.59 -23.82 16 15 C 0.59 17.79 7.80 86.64 0.68 18.46 16 16 O -0.57 -19.00 16.68 -4.11 -0.07 -19.07 16 17 C -0.01 -0.29 6.68 41.00 0.27 -0.02 16 18 C -0.21 -3.62 10.63 67.37 0.72 -2.90 16 19 S 0.30 3.20 23.17 -56.49 -1.31 1.89 16 20 C 0.09 1.94 7.47 87.38 0.65 2.59 16 21 C 0.23 4.75 8.05 136.30 1.10 5.85 16 22 N -0.48 -13.25 11.28 -189.66 -2.14 -15.38 16 23 C -0.06 -1.13 11.84 83.67 0.99 -0.14 16 24 C 0.01 0.12 12.03 83.18 1.00 1.12 16 25 N -0.54 -5.37 6.22 -187.53 -1.17 -6.53 16 26 H 0.44 0.67 8.96 -92.71 -0.83 -0.16 16 27 N -0.44 -12.04 10.07 -179.26 -1.81 -13.85 16 28 C -0.16 -5.55 7.44 31.18 0.23 -5.31 16 29 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.37 20.97 7.90 -92.71 -0.73 20.24 16 31 H 0.06 2.55 8.10 -2.39 -0.02 2.53 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.11 2.90 8.10 -2.38 -0.02 2.88 16 34 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.08 2.11 7.87 -2.39 -0.02 2.09 16 37 H 0.41 12.99 7.96 -92.71 -0.74 12.25 16 38 H 0.21 2.87 8.01 -2.91 -0.02 2.85 16 39 H 0.19 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.24 -0.48 8.06 -2.91 -0.02 -0.50 16 41 H 0.09 2.85 7.92 -2.39 -0.02 2.83 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -83.59 380.33 -1.85 -85.43 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -1.20 Total: 36.45 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 7.82 Total: 5.66 kcal Atomic # 7 Polarization: -150.70 SS G_CDS: -9.12 Total: -159.82 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.07 Total: -19.07 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.31 Total: 1.89 kcal Total: -83.59 -1.85 -85.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091154884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.843 kcal (2) G-P(sol) polarization free energy of solvation -83.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds