Wall clock time and date at job start Wed Apr 1 2020 04:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.31033 * 119.06943 * 18.01363 * 3 2 1 5 5 C 1.35156 * 120.54983 * 179.97438 * 4 3 2 6 6 N 1.31904 * 120.57281 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99772 * 359.97438 * 6 5 4 8 8 H 1.09001 * 112.84879 * 11.19415 * 7 6 5 9 9 C 1.53785 * 113.61373 * 142.50687 * 7 6 5 10 10 C 1.53775 * 87.08173 * 139.97897 * 9 7 6 11 11 H 1.09000 * 113.69236 * 89.12080 * 10 9 7 12 12 C 1.53002 * 113.61486 * 220.01706 * 10 9 7 13 13 N 1.46495 * 109.47212 * 272.49833 * 12 10 9 14 14 C 1.34773 * 120.00357 * 179.97438 * 13 12 10 15 15 O 1.21287 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00266 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47087 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99917 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00415 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99716 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00435 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99769 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 60.00524 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00621 * 22 20 18 26 26 C 1.53786 * 87.08448 * 334.56573 * 10 9 7 27 27 C 1.46887 * 118.85406 * 0.24704 * 5 4 3 28 28 C 1.34949 * 118.30601 * 359.49202 * 27 5 4 29 29 N 1.36222 * 119.06518 * 197.99144 * 3 2 1 30 30 H 0.97004 * 119.42922 * 0.04218 * 29 3 2 31 31 H 1.08995 * 113.61502 * 25.42711 * 9 7 6 32 32 H 1.08997 * 113.60871 * 254.52490 * 9 7 6 33 33 H 1.08996 * 109.47250 * 152.49113 * 12 10 9 34 34 H 1.09000 * 109.46904 * 32.49816 * 12 10 9 35 35 H 0.97005 * 119.99881 * 359.97438 * 13 12 10 36 36 H 1.09001 * 109.46841 * 60.00041 * 16 14 13 37 37 H 1.08996 * 109.46854 * 300.00149 * 16 14 13 38 38 H 0.97000 * 119.99818 * 0.02562 * 21 20 18 39 39 H 1.08991 * 113.61576 * 139.98146 * 26 10 9 40 40 H 1.09002 * 113.60903 * 270.80752 * 26 10 9 41 41 H 1.08000 * 120.84757 * 179.72543 * 27 5 4 42 42 H 1.08003 * 120.35370 * 180.23388 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2052 -1.0882 -0.3542 5 6 4.5563 -1.1207 -0.3655 6 7 5.1981 -2.2167 -0.7214 7 6 4.4461 -3.4128 -1.1085 8 1 3.3830 -3.2174 -1.2491 9 6 5.0885 -4.1970 -2.2650 10 6 4.6988 -5.4780 -1.5088 11 1 3.7050 -5.8492 -1.7592 12 6 5.7704 -6.5689 -1.5582 13 7 5.5790 -7.3875 -2.7579 14 6 6.4122 -8.4158 -3.0121 15 8 7.3203 -8.6639 -2.2473 16 6 6.2150 -9.2583 -4.2460 17 16 7.4828 -10.5487 -4.3045 18 6 7.0270 -11.3578 -5.8019 19 1 6.1797 -11.0042 -6.3705 20 6 7.7576 -12.4491 -6.2512 21 7 8.7906 -12.8799 -5.5585 22 14 7.2739 -13.3073 -7.8384 23 1 7.3428 -12.3414 -8.9642 24 1 8.2056 -14.4348 -8.0953 25 1 5.8886 -13.8282 -7.7172 26 6 4.7357 -4.6360 -0.2224 27 6 5.2976 0.0838 0.0313 28 6 4.5949 1.1811 0.3823 29 7 3.2293 1.1334 0.3678 30 1 2.7220 1.9196 0.6238 31 1 6.1653 -4.0492 -2.3476 32 1 4.5694 -4.0762 -3.2157 33 1 5.6892 -7.1984 -0.6720 34 1 6.7575 -6.1075 -1.5868 35 1 4.8525 -7.1893 -3.3695 36 1 6.2955 -8.6289 -5.1323 37 1 5.2281 -9.7200 -4.2167 38 1 9.0411 -12.4350 -4.7338 39 1 3.9318 -4.8696 0.4755 40 1 5.7157 -4.6095 0.2540 41 1 6.3775 0.0921 0.0383 42 1 5.1063 2.0858 0.6761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091325588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:04 Heat of formation + Delta-G solvation = 52.509957 kcal Electronic energy + Delta-G solvation = -25103.361676 eV Core-core repulsion = 21210.171332 eV Total energy + Delta-G solvation = -3893.190344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95140 -40.91218 -39.82051 -38.04997 -36.59815 -35.42912 -34.74098 -34.04749 -32.05894 -31.17287 -28.26104 -27.03068 -26.79668 -26.61759 -24.88175 -22.49737 -21.92441 -20.96467 -20.55634 -20.21472 -19.20400 -18.65463 -17.96165 -17.62060 -16.98521 -16.76617 -16.63288 -16.20070 -16.05515 -15.67714 -15.18709 -14.97769 -14.84735 -14.56197 -14.51764 -14.48862 -14.43962 -14.13819 -13.91014 -13.76071 -13.61948 -13.38315 -13.33093 -12.72925 -12.41560 -12.01099 -11.94790 -11.77559 -11.54055 -11.48351 -11.30108 -11.09343 -11.07413 -10.97814 -10.32632 -10.23395 -10.16306 -8.92509 -8.87204 -8.58906 -6.27646 -0.60004 0.46440 0.86633 1.19875 1.35892 1.51310 1.52411 1.61338 1.64632 1.81682 2.19203 2.35691 2.51289 2.68323 3.02654 3.13976 3.25909 3.57856 3.59433 3.64141 3.83410 3.91473 4.09633 4.16194 4.18143 4.24385 4.34084 4.37257 4.47250 4.66916 4.77848 4.80519 4.84905 4.91901 5.01575 5.02323 5.24850 5.37112 5.47831 5.52333 5.64301 5.78756 6.08617 6.14780 6.43735 6.68399 7.06659 7.09250 7.15796 8.50914 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.001405 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.050788 B =19919.030405 C =20363.601041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C 0.276 3.724 3 C 0.507 3.493 4 N -0.558 5.558 5 C 0.338 3.662 6 N -0.563 5.563 7 C 0.053 3.947 8 H 0.079 0.921 9 C -0.114 4.114 10 C -0.106 4.106 11 H 0.115 0.885 12 C 0.137 3.863 13 N -0.708 5.708 14 C 0.531 3.469 15 O -0.568 6.568 16 C -0.109 4.109 17 S -0.197 6.197 18 C -0.615 4.615 19 H 0.075 0.925 20 C -0.019 4.019 21 N -0.913 5.913 22 Si 1.138 2.862 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.111 4.111 27 C -0.221 4.221 28 C 0.156 3.844 29 N -0.596 5.596 30 H 0.447 0.553 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.417 0.583 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.260 0.740 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.165 0.835 42 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 39.812 13.779 45.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.041 5.041 2 C -0.045 4.045 3 C 0.229 3.771 4 N -0.288 5.288 5 C 0.064 3.936 6 N -0.285 5.285 7 C -0.059 4.059 8 H 0.097 0.903 9 C -0.152 4.152 10 C -0.126 4.126 11 H 0.133 0.867 12 C 0.013 3.987 13 N -0.361 5.361 14 C 0.316 3.684 15 O -0.447 6.447 16 C -0.260 4.260 17 S 0.030 5.970 18 C -0.763 4.763 19 H 0.094 0.906 20 C -0.222 4.222 21 N -0.548 5.548 22 Si 0.955 3.045 23 H -0.188 1.188 24 H -0.205 1.205 25 H -0.188 1.188 26 C -0.150 4.150 27 C -0.251 4.251 28 C 0.031 3.969 29 N -0.218 5.218 30 H 0.289 0.711 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.183 0.817 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -15.527 36.863 13.644 42.263 hybrid contribution -1.625 2.000 0.268 2.591 sum -17.152 38.863 13.913 44.700 Atomic orbital electron populations 1.81418 1.11720 1.05497 1.05486 1.24310 0.90560 0.94660 0.94953 1.16530 0.84904 0.84669 0.91005 1.69250 1.12349 1.24138 1.23053 1.21757 0.84259 0.94691 0.92872 1.73586 1.33467 0.99802 1.21614 1.22802 0.96875 0.89597 0.96644 0.90283 1.23008 1.00995 0.94044 0.97127 1.22587 0.99020 0.92694 0.98252 0.86737 1.21333 0.98809 0.91706 0.86842 1.45734 1.32845 1.30573 1.26987 1.20065 0.81512 0.80757 0.86048 1.90689 1.33591 1.70549 1.49889 1.23225 1.03755 0.99562 0.99500 1.85066 1.41946 1.35893 1.34087 1.24051 1.21229 1.21213 1.09787 0.90630 1.27868 0.92490 0.95171 1.06676 1.70916 1.26312 1.41630 1.15920 0.82708 0.76550 0.75448 0.69782 1.18785 1.20459 1.18787 1.22944 1.02205 0.94058 0.95804 1.22402 1.02446 0.90851 1.09377 1.22739 0.79955 1.00811 0.93348 1.42123 1.07662 1.13429 1.58618 0.71121 0.90760 0.90962 0.92267 0.92747 0.74618 0.87006 0.86908 0.92912 0.90894 0.90404 0.81709 0.74328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -4.46 18.54 19.00 0.35 -4.10 16 2 C 0.28 2.11 15.62 88.33 1.38 3.49 16 3 C 0.51 2.99 7.48 135.42 1.01 4.00 16 4 N -0.56 -8.19 8.88 -186.87 -1.66 -9.85 16 5 C 0.34 5.59 7.60 136.53 1.04 6.62 16 6 N -0.56 -12.78 10.61 -318.18 -3.38 -16.15 16 7 C 0.05 1.15 4.34 45.52 0.20 1.35 16 8 H 0.08 1.78 7.06 -2.39 -0.02 1.76 16 9 C -0.11 -2.43 7.43 31.12 0.23 -2.20 16 10 C -0.11 -2.12 3.75 -10.27 -0.04 -2.16 16 11 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 12 C 0.14 3.58 5.51 86.38 0.48 4.06 16 13 N -0.71 -19.82 5.56 -463.07 -2.57 -22.39 16 14 C 0.53 20.91 7.85 87.66 0.69 21.60 16 15 O -0.57 -27.92 15.86 -3.05 -0.05 -27.97 16 16 C -0.11 -4.54 6.16 71.24 0.44 -4.10 16 17 S -0.20 -11.22 19.60 -56.49 -1.11 -12.33 16 18 C -0.62 -36.43 9.50 67.96 0.65 -35.78 16 19 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 20 C -0.02 -1.13 5.49 84.86 0.47 -0.66 16 21 N -0.91 -59.22 13.67 21.65 0.30 -58.92 16 22 Si 1.14 50.27 29.92 68.60 2.05 52.33 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 C -0.11 -2.33 7.44 31.12 0.23 -2.10 16 27 C -0.22 -1.39 10.29 23.78 0.24 -1.14 16 28 C 0.16 -0.69 11.28 83.19 0.94 0.25 16 29 N -0.60 2.33 5.31 -192.00 -1.02 1.32 16 30 H 0.45 -5.37 8.73 -92.71 -0.81 -6.18 16 31 H 0.07 1.84 7.90 -2.39 -0.02 1.82 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.61 7.84 -2.39 -0.02 1.60 16 35 H 0.42 8.67 8.47 -92.70 -0.79 7.89 16 36 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 37 H 0.11 4.23 8.14 -2.40 -0.02 4.21 16 38 H 0.26 17.58 7.13 -92.71 -0.66 16.92 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 41 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 42 H 0.24 -3.69 8.06 -2.91 -0.02 -3.72 16 Total: -1.00 -95.17 387.00 0.47 -94.69 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -0.40 Total: 10.15 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 7.95 Total: -6.77 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -7.98 Total: -110.10 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.33 kcal Atomic # 16 Polarization: -11.22 SS G_CDS: -1.11 Total: -12.33 kcal Total: -95.17 0.47 -94.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091325588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.203 kcal (2) G-P(sol) polarization free energy of solvation -95.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds