Wall clock time and date at job start Wed Apr 1 2020 04:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40153 * 120.11177 * 291.11363 * 3 2 1 5 5 C 1.38254 * 117.97735 * 180.02562 * 4 3 2 6 6 C 1.39621 * 118.03388 * 0.02562 * 5 4 3 7 7 N 1.38648 * 120.03584 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99974 * 359.97438 * 7 6 5 9 9 H 1.09005 * 112.84734 * 25.34391 * 8 7 6 10 10 C 1.53782 * 113.61483 * 156.53115 * 8 7 6 11 11 C 1.53777 * 87.08014 * 89.12072 * 10 8 7 12 12 H 1.09000 * 113.61452 * 270.88658 * 11 10 8 13 13 C 1.52998 * 113.61644 * 139.98192 * 11 10 8 14 14 N 1.46499 * 109.47170 * 175.00026 * 13 11 10 15 15 C 1.34779 * 119.99733 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00329 * 359.97438 * 15 14 13 17 17 C 1.50708 * 119.99717 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.46851 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99791 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99920 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00341 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99864 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47343 * 59.99982 * 23 21 19 25 25 H 1.48502 * 109.46992 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47303 * 299.99563 * 23 21 19 27 27 C 1.53782 * 113.62031 * 254.14387 * 8 7 6 28 28 N 1.32749 * 119.92939 * 359.97438 * 6 5 4 29 29 N 1.28356 * 122.18361 * 0.02562 * 28 6 5 30 30 H 1.07998 * 121.01019 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.98217 * 179.97438 * 5 4 3 32 32 H 0.96993 * 120.00421 * 179.97438 * 7 6 5 33 33 H 1.09005 * 113.61720 * 203.66950 * 10 8 7 34 34 H 1.09004 * 113.61312 * 334.48708 * 10 8 7 35 35 H 1.08999 * 109.46898 * 295.00238 * 13 11 10 36 36 H 1.09004 * 109.47054 * 54.99973 * 13 11 10 37 37 H 0.96999 * 120.00047 * 359.97438 * 14 13 11 38 38 H 1.08999 * 109.46860 * 299.99625 * 17 15 14 39 39 H 1.08997 * 109.46824 * 59.99802 * 17 15 14 40 40 H 0.96993 * 120.00381 * 179.97438 * 22 21 19 41 41 H 1.09000 * 113.60844 * 25.42765 * 27 8 7 42 42 H 1.08998 * 113.61403 * 156.33855 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -0.4358 1.1310 5 6 4.6529 -0.4161 1.0832 6 6 5.2626 0.0376 -0.0881 7 7 6.6454 0.0743 -0.1814 8 6 7.4677 -0.3626 0.9496 9 1 6.9541 -1.0740 1.5965 10 6 8.8834 -0.8077 0.5464 11 6 9.3119 0.6574 0.7322 12 1 9.2043 1.2615 -0.1687 13 6 10.6815 0.8161 1.3954 14 7 11.0512 2.2335 1.4196 15 6 12.2256 2.6144 1.9601 16 8 12.9761 1.7840 2.4269 17 6 12.6056 4.0726 1.9855 18 16 14.2266 4.2600 2.7686 19 6 14.4149 6.0090 2.6672 20 1 13.6399 6.6103 2.2153 21 6 15.5598 6.6139 3.1671 22 7 16.5046 5.8810 3.7174 23 14 15.7598 8.4680 3.0589 24 1 14.6535 9.1291 3.7966 25 1 17.0600 8.8614 3.6588 26 1 15.7252 8.8873 1.6348 27 6 8.1316 0.7958 1.7126 28 7 4.5168 0.4329 -1.1127 29 7 3.2340 0.4158 -1.0714 30 1 2.7500 -0.7770 2.0131 31 1 5.2432 -0.7413 1.9272 32 1 7.0685 0.3892 -0.9954 33 1 9.3456 -1.4915 1.2584 34 1 8.9544 -1.1575 -0.4836 35 1 10.6375 0.4346 2.4156 36 1 11.4262 0.2559 0.8299 37 1 10.4511 2.8976 1.0459 38 1 12.6489 4.4545 0.9655 39 1 11.8611 4.6322 2.5517 40 1 17.3049 6.3036 4.0664 41 1 7.5963 1.7411 1.6230 42 1 8.3887 0.5496 2.7428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091429918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:47 Heat of formation + Delta-G solvation = 81.011276 kcal Electronic energy + Delta-G solvation = -25144.562553 eV Core-core repulsion = 21252.608118 eV Total energy + Delta-G solvation = -3891.954434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76368 -40.32490 -38.96375 -37.25379 -35.88502 -34.10978 -33.84557 -32.45742 -31.28022 -29.86138 -27.50796 -26.35548 -25.89742 -25.46985 -24.72806 -22.94879 -20.73674 -20.37020 -19.66263 -18.92909 -18.02938 -17.76362 -16.43350 -16.37183 -16.03741 -15.94104 -15.54204 -15.28636 -14.83066 -14.71264 -14.53288 -14.38481 -14.06218 -13.93343 -13.74087 -13.47016 -13.38214 -13.13275 -13.02059 -12.73366 -12.59753 -12.16213 -11.91914 -11.62455 -11.45029 -11.07630 -11.06237 -11.00811 -10.93259 -10.84932 -10.76713 -10.31233 -9.85458 -9.45811 -9.09351 -8.95729 -8.79326 -8.27992 -6.53617 -6.24457 -3.95498 0.00717 0.15149 1.91826 2.17039 2.25119 2.95786 2.97740 3.03954 3.17432 3.21404 3.25399 3.28316 3.61744 3.71426 3.80030 3.85539 3.99002 4.02692 4.17806 4.17863 4.19321 4.29832 4.66514 4.83914 4.91806 5.03976 5.10283 5.10765 5.13106 5.16750 5.21344 5.26107 5.39550 5.48601 5.59422 5.67573 5.83792 5.85890 6.09543 6.20290 6.54632 6.71150 6.84261 7.56348 7.63388 8.03084 8.32067 8.55071 9.20845 10.82916 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.001452 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.982491 B =19274.500268 C =20232.095229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.276 3.724 3 C 0.071 3.929 4 C -0.032 4.032 5 C -0.177 4.177 6 C 0.366 3.634 7 N -0.681 5.681 8 C 0.117 3.883 9 H 0.103 0.897 10 C -0.133 4.133 11 C -0.123 4.123 12 H 0.098 0.902 13 C 0.131 3.869 14 N -0.739 5.739 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.075 3.925 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.150 4.150 28 N -0.296 5.296 29 N -0.149 5.149 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.415 0.585 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.077 0.923 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.940 -16.026 -5.609 29.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.042 4.042 3 C -0.080 4.080 4 C -0.062 4.062 5 C -0.210 4.210 6 C 0.124 3.876 7 N -0.311 5.311 8 C 0.011 3.989 9 H 0.121 0.879 10 C -0.171 4.171 11 C -0.142 4.142 12 H 0.116 0.884 13 C 0.007 3.993 14 N -0.393 5.393 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.189 4.189 28 N -0.150 5.150 29 N 0.004 4.996 30 H 0.177 0.823 31 H 0.178 0.822 32 H 0.253 0.747 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.106 -16.914 -6.092 30.071 hybrid contribution -0.292 2.125 0.296 2.165 sum -24.398 -14.788 -5.796 29.113 Atomic orbital electron populations 1.81299 1.11278 1.07567 1.06502 1.24529 0.91136 0.94239 0.94309 1.17697 0.87664 1.07878 0.94710 1.22086 0.93746 0.92613 0.97714 1.21853 0.94926 1.04934 0.99323 1.20216 0.87184 0.88990 0.91211 1.44194 1.00547 1.68013 1.18362 1.22086 0.91357 0.97403 0.88017 0.87946 1.23302 0.93571 0.96720 1.03555 1.22910 0.94316 0.97484 0.99494 0.88412 1.21253 0.94350 0.82939 1.00749 1.45989 1.21318 1.08298 1.63742 1.20320 0.80370 0.90852 0.76737 1.90703 1.50259 1.53674 1.44579 1.23535 1.06901 0.94389 1.05648 1.85386 1.12593 1.09249 1.76133 1.22827 1.07691 0.91940 1.46081 0.90978 1.24983 0.94776 0.99262 0.94464 1.70002 1.07768 1.35835 1.36684 0.86228 0.77629 0.83103 0.78572 1.19937 1.20782 1.19931 1.23689 0.96579 0.99246 0.99368 1.73283 0.98266 1.20103 1.23318 1.73183 1.00659 1.05398 1.20342 0.82256 0.82233 0.74720 0.87634 0.90085 0.91358 0.91442 0.76865 0.89258 0.89261 0.92102 0.90445 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -3.87 18.54 41.84 0.78 -3.09 16 2 C 0.28 2.18 15.57 -22.47 -0.35 1.83 16 3 C 0.07 0.47 6.67 -84.80 -0.57 -0.10 16 4 C -0.03 -0.11 9.91 -38.86 -0.38 -0.49 16 5 C -0.18 -0.56 9.34 -39.06 -0.36 -0.92 16 6 C 0.37 1.94 7.74 -154.88 -1.20 0.74 16 7 N -0.68 -2.43 5.42 -53.02 -0.29 -2.72 16 8 C 0.12 0.27 4.08 -67.12 -0.27 0.00 16 9 H 0.10 0.09 6.20 -51.93 -0.32 -0.24 16 10 C -0.13 -0.37 7.38 -25.92 -0.19 -0.56 16 11 C -0.12 -0.56 3.65 -89.66 -0.33 -0.89 16 12 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 13 C 0.13 1.15 5.51 -4.04 -0.02 1.12 16 14 N -0.74 -8.39 5.56 -60.29 -0.33 -8.73 16 15 C 0.53 9.22 7.85 -10.98 -0.09 9.13 16 16 O -0.52 -11.16 15.86 5.56 0.09 -11.07 16 17 C -0.15 -2.97 6.16 36.01 0.22 -2.74 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 23 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C -0.15 -0.54 7.45 -25.77 -0.19 -0.73 16 28 N -0.30 -2.41 11.54 31.23 0.36 -2.05 16 29 N -0.15 -1.32 11.44 32.29 0.37 -0.95 16 30 H 0.16 0.05 8.06 -52.49 -0.42 -0.37 16 31 H 0.16 0.07 6.16 -52.48 -0.32 -0.25 16 32 H 0.42 1.42 8.83 -40.82 -0.36 1.06 16 33 H 0.11 0.26 8.10 -51.93 -0.42 -0.16 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 3.43 8.47 -40.82 -0.35 3.08 16 38 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 39 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.37 7.90 -51.93 -0.41 -0.04 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -36.86 385.84 -8.35 -45.21 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.09 Total: -3.23 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -3.54 Total: -6.37 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 1.62 Total: -42.60 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.86 -8.35 -45.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091429918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.222 kcal (2) G-P(sol) polarization free energy of solvation -36.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds