Wall clock time and date at job start Wed Apr 1 2020 04:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40153 * 120.11177 * 291.11363 * 3 2 1 5 5 C 1.38254 * 117.97735 * 180.02562 * 4 3 2 6 6 C 1.39621 * 118.03388 * 0.02562 * 5 4 3 7 7 N 1.38648 * 120.03584 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99974 * 359.97438 * 7 6 5 9 9 H 1.09005 * 112.84734 * 25.34391 * 8 7 6 10 10 C 1.53782 * 113.61483 * 156.53115 * 8 7 6 11 11 C 1.53777 * 87.08014 * 89.12072 * 10 8 7 12 12 H 1.09000 * 113.61452 * 270.88658 * 11 10 8 13 13 C 1.52998 * 113.61644 * 139.98192 * 11 10 8 14 14 N 1.46499 * 109.47170 * 175.00026 * 13 11 10 15 15 C 1.34779 * 119.99733 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00329 * 359.97438 * 15 14 13 17 17 C 1.50708 * 119.99717 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.46851 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99791 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99920 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00341 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99864 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47343 * 59.99982 * 23 21 19 25 25 H 1.48502 * 109.46992 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47303 * 299.99563 * 23 21 19 27 27 C 1.53782 * 113.62031 * 254.14387 * 8 7 6 28 28 N 1.32749 * 119.92939 * 359.97438 * 6 5 4 29 29 N 1.28356 * 122.18361 * 0.02562 * 28 6 5 30 30 H 1.07998 * 121.01019 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.98217 * 179.97438 * 5 4 3 32 32 H 0.96993 * 120.00421 * 179.97438 * 7 6 5 33 33 H 1.09005 * 113.61720 * 203.66950 * 10 8 7 34 34 H 1.09004 * 113.61312 * 334.48708 * 10 8 7 35 35 H 1.08999 * 109.46898 * 295.00238 * 13 11 10 36 36 H 1.09004 * 109.47054 * 54.99973 * 13 11 10 37 37 H 0.96999 * 120.00047 * 359.97438 * 14 13 11 38 38 H 1.08999 * 109.46860 * 299.99625 * 17 15 14 39 39 H 1.08997 * 109.46824 * 59.99802 * 17 15 14 40 40 H 0.96993 * 120.00381 * 179.97438 * 22 21 19 41 41 H 1.09000 * 113.60844 * 25.42765 * 27 8 7 42 42 H 1.08998 * 113.61403 * 156.33855 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -0.4358 1.1310 5 6 4.6529 -0.4161 1.0832 6 6 5.2626 0.0376 -0.0881 7 7 6.6454 0.0743 -0.1814 8 6 7.4677 -0.3626 0.9496 9 1 6.9541 -1.0740 1.5965 10 6 8.8834 -0.8077 0.5464 11 6 9.3119 0.6574 0.7322 12 1 9.2043 1.2615 -0.1687 13 6 10.6815 0.8161 1.3954 14 7 11.0512 2.2335 1.4196 15 6 12.2256 2.6144 1.9601 16 8 12.9761 1.7840 2.4269 17 6 12.6056 4.0726 1.9855 18 16 14.2266 4.2600 2.7686 19 6 14.4149 6.0090 2.6672 20 1 13.6399 6.6103 2.2153 21 6 15.5598 6.6139 3.1671 22 7 16.5046 5.8810 3.7174 23 14 15.7598 8.4680 3.0589 24 1 14.6535 9.1291 3.7966 25 1 17.0600 8.8614 3.6588 26 1 15.7252 8.8873 1.6348 27 6 8.1316 0.7958 1.7126 28 7 4.5168 0.4329 -1.1127 29 7 3.2340 0.4158 -1.0714 30 1 2.7500 -0.7770 2.0131 31 1 5.2432 -0.7413 1.9272 32 1 7.0685 0.3892 -0.9954 33 1 9.3456 -1.4915 1.2584 34 1 8.9544 -1.1575 -0.4836 35 1 10.6375 0.4346 2.4156 36 1 11.4262 0.2559 0.8299 37 1 10.4511 2.8976 1.0459 38 1 12.6489 4.4545 0.9655 39 1 11.8611 4.6322 2.5517 40 1 17.3049 6.3036 4.0664 41 1 7.5963 1.7411 1.6230 42 1 8.3887 0.5496 2.7428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091429918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:46 Heat of formation + Delta-G solvation = 54.244938 kcal Electronic energy + Delta-G solvation = -25145.723228 eV Core-core repulsion = 21252.608118 eV Total energy + Delta-G solvation = -3893.115110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14572 -40.91208 -40.05151 -37.87545 -36.45667 -35.06647 -34.57503 -34.20043 -31.87437 -31.02657 -28.33530 -27.59452 -26.61405 -26.35697 -25.07281 -23.45845 -21.80248 -21.00697 -20.12284 -19.75249 -19.25428 -18.26300 -17.70464 -17.29198 -16.87056 -16.68964 -16.48856 -16.32788 -15.80706 -15.78791 -15.22297 -15.11404 -14.83054 -14.68976 -14.49405 -14.45303 -14.27875 -13.94085 -13.85752 -13.60282 -13.32719 -13.16197 -12.99501 -12.85617 -12.64693 -12.61835 -12.09895 -11.86317 -11.72723 -11.34453 -11.28051 -11.19839 -11.12316 -10.83916 -10.68563 -10.26942 -10.03756 -9.13663 -8.65528 -8.33930 -6.11868 -0.41017 -0.14079 1.28610 1.36519 1.44207 1.48132 1.58025 1.65243 1.74307 1.82592 2.27593 2.35612 2.48894 2.72083 3.00246 3.33083 3.43947 3.50623 3.55436 3.63553 3.74091 3.85797 3.88970 3.95952 4.06476 4.31259 4.37407 4.43784 4.52926 4.63890 4.70643 4.80427 4.90901 4.92375 4.93174 5.01399 5.14761 5.19012 5.36170 5.42246 5.55424 5.94367 6.20168 6.25087 6.42332 6.55072 7.07511 7.29231 7.61928 8.74967 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.001452 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.982491 B =19274.500268 C =20232.095229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.298 3.702 3 C 0.061 3.939 4 C -0.022 4.022 5 C -0.165 4.165 6 C 0.360 3.640 7 N -0.676 5.676 8 C 0.126 3.874 9 H 0.129 0.871 10 C -0.126 4.126 11 C -0.121 4.121 12 H 0.104 0.896 13 C 0.129 3.871 14 N -0.711 5.711 15 C 0.532 3.468 16 O -0.567 6.567 17 C -0.131 4.131 18 S -0.151 6.151 19 C -0.549 4.549 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.996 3.004 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.147 4.147 28 N -0.330 5.330 29 N -0.186 5.186 30 H 0.194 0.806 31 H 0.195 0.805 32 H 0.415 0.585 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.072 0.928 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.368 -15.940 -5.355 30.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.019 4.019 3 C -0.091 4.091 4 C -0.051 4.051 5 C -0.197 4.197 6 C 0.117 3.883 7 N -0.305 5.305 8 C 0.021 3.979 9 H 0.146 0.854 10 C -0.165 4.165 11 C -0.140 4.140 12 H 0.122 0.878 13 C 0.005 3.995 14 N -0.365 5.365 15 C 0.317 3.683 16 O -0.446 6.446 17 C -0.283 4.283 18 S 0.076 5.924 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.185 4.185 28 N -0.184 5.184 29 N -0.032 5.032 30 H 0.212 0.788 31 H 0.212 0.788 32 H 0.252 0.748 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.251 0.749 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.583 -16.827 -5.878 31.180 hybrid contribution 0.133 2.011 0.180 2.023 sum -25.449 -14.817 -5.698 29.994 Atomic orbital electron populations 1.81309 1.12489 1.09251 1.08000 1.24738 0.91339 0.92899 0.92972 1.17820 0.86862 1.08727 0.95713 1.22435 0.93903 0.91257 0.97495 1.22237 0.94954 1.03297 0.99258 1.20432 0.87631 0.88771 0.91490 1.44296 1.00056 1.67464 1.18716 1.22109 0.91146 0.97095 0.87557 0.85374 1.23295 0.93648 0.95389 1.04133 1.22927 0.91944 0.99332 0.99751 0.87810 1.21473 0.96460 0.80622 1.00919 1.45773 1.19240 1.10202 1.61281 1.20025 0.81650 0.89526 0.77056 1.90690 1.52238 1.54410 1.47249 1.23390 1.02422 0.96589 1.05862 1.85545 1.18909 1.10027 1.77929 1.23181 1.08237 0.92150 1.46076 0.89977 1.26093 0.94259 1.04843 0.93756 1.70168 1.08470 1.38213 1.37861 0.85033 0.77871 0.76164 0.79115 1.18674 1.20402 1.18746 1.23679 0.95863 0.99610 0.99381 1.73158 0.98191 1.21924 1.25119 1.73072 1.01350 1.06913 1.21846 0.78840 0.78781 0.74789 0.86869 0.89723 0.91770 0.92687 0.74869 0.87457 0.87320 0.91989 0.90911 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.66 18.54 19.00 0.35 -8.31 16 2 C 0.30 4.60 15.57 88.33 1.38 5.98 16 3 C 0.06 0.73 6.67 40.71 0.27 1.00 16 4 C -0.02 -0.08 9.91 22.74 0.23 0.14 16 5 C -0.16 -0.42 9.34 22.61 0.21 -0.21 16 6 C 0.36 2.95 7.74 133.20 1.03 3.98 16 7 N -0.68 -2.89 5.42 -321.66 -1.74 -4.64 16 8 C 0.13 0.10 4.08 45.52 0.19 0.28 16 9 H 0.13 -0.47 6.20 -2.38 -0.01 -0.49 16 10 C -0.13 -0.30 7.38 31.12 0.23 -0.07 16 11 C -0.12 -0.76 3.65 -10.18 -0.04 -0.80 16 12 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 13 C 0.13 2.02 5.51 86.38 0.48 2.50 16 14 N -0.71 -14.84 5.56 -463.05 -2.57 -17.41 16 15 C 0.53 18.12 7.85 87.66 0.69 18.80 16 16 O -0.57 -24.85 15.86 -3.02 -0.05 -24.90 16 17 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 18 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 19 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 21 C 0.02 0.87 5.49 84.86 0.47 1.33 16 22 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 23 Si 1.00 42.88 29.55 68.60 2.03 44.91 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 27 C -0.15 -0.55 7.45 31.22 0.23 -0.31 16 28 N -0.33 -5.12 11.54 -55.12 -0.64 -5.76 16 29 N -0.19 -3.24 11.44 -51.75 -0.59 -3.83 16 30 H 0.19 -0.69 8.06 -2.91 -0.02 -0.71 16 31 H 0.20 -0.92 6.16 -2.91 -0.02 -0.94 16 32 H 0.41 1.92 8.83 -92.71 -0.82 1.10 16 33 H 0.11 0.18 8.10 -2.38 -0.02 0.16 16 34 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.06 1.11 7.85 -2.39 -0.02 1.09 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.41 5.99 8.47 -92.71 -0.79 5.20 16 38 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 39 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 42 H 0.10 0.39 7.90 -2.39 -0.02 0.37 16 Total: -1.00 -85.24 385.84 1.84 -83.40 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -0.51 Total: 2.95 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.44 Total: -2.08 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -4.91 Total: -94.90 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -85.24 1.84 -83.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091429918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.647 kcal (2) G-P(sol) polarization free energy of solvation -85.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds