Wall clock time and date at job start Wed Apr 1 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.46116 * 2 1 4 4 C 1.54384 * 110.40971 * 237.58993 * 2 1 3 5 5 H 1.09001 * 110.40764 * 336.30602 * 4 2 1 6 6 N 1.46498 * 110.32277 * 98.47097 * 4 2 1 7 7 C 1.34777 * 119.99828 * 201.81150 * 6 4 2 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 4 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 4 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47098 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47081 * 120.00118 * 15 13 11 18 18 H 1.48496 * 109.47496 * 240.00528 * 15 13 11 19 19 C 1.54261 * 105.05798 * 217.36930 * 4 2 1 20 20 C 1.54376 * 105.06268 * 359.97438 * 19 4 2 21 21 N 1.48554 * 110.41270 * 122.41939 * 2 1 3 22 22 C 1.38568 * 110.99514 * 277.81729 * 21 2 1 23 23 C 1.39756 * 119.97908 * 184.43516 * 22 21 2 24 24 N 1.31553 * 120.03168 * 179.71228 * 23 22 21 25 25 C 1.33296 * 119.99005 * 0.55879 * 24 23 22 26 26 C 1.43203 * 120.02187 * 179.73410 * 25 24 23 27 27 N 7.31156 * 94.58715 * 65.35490 * 2 1 3 28 28 C 1.39520 * 119.96625 * 359.71332 * 25 24 23 29 29 N 1.32043 * 119.96393 * 359.97438 * 28 25 24 30 30 H 1.08998 * 109.47211 * 182.40954 * 1 2 3 31 31 H 1.08996 * 109.46931 * 302.41117 * 1 2 3 32 32 H 1.09005 * 109.47107 * 62.41241 * 1 2 3 33 33 H 0.97001 * 120.00384 * 22.09597 * 6 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 35 35 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 36 36 H 0.96991 * 119.99795 * 179.97438 * 14 13 11 37 37 H 1.09001 * 110.32401 * 118.89713 * 19 4 2 38 38 H 1.09005 * 110.32265 * 241.09893 * 19 4 2 39 39 H 1.09005 * 110.41259 * 142.63082 * 20 19 4 40 40 H 1.08992 * 110.41393 * 264.95867 * 20 19 4 41 41 H 1.08001 * 119.98239 * 359.97438 * 23 22 21 42 42 H 1.07993 * 120.02376 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0684 -0.7755 -1.2215 5 1 1.3242 -1.4879 -1.5777 6 7 2.4355 0.1539 -2.2928 7 6 2.5048 -0.2800 -3.5670 8 8 2.2582 -1.4386 -3.8274 9 6 2.8885 0.6745 -4.6683 10 16 2.8918 -0.2015 -6.2521 11 6 3.3591 1.1133 -7.3279 12 1 3.5447 2.0989 -6.9273 13 6 3.4897 0.8821 -8.6903 14 7 3.2639 -0.3192 -9.1787 15 14 3.9844 2.2762 -9.8311 16 1 4.1781 3.5180 -9.0401 17 1 5.2525 1.9258 -10.5199 18 1 2.9166 2.4930 -10.8399 19 6 3.3178 -1.5189 -0.7055 20 6 3.4295 -1.1295 0.7842 21 7 2.0482 -0.7464 1.1753 22 6 2.0564 0.0531 2.3070 23 6 2.5956 -0.4326 3.5013 24 7 2.6091 0.3276 4.5748 25 6 2.0982 1.5578 4.5266 26 6 2.1074 2.3839 5.6963 27 7 2.1148 3.0391 6.6243 28 6 1.5548 2.0405 3.3356 29 7 1.5477 1.2783 2.2574 30 1 -0.3633 -1.0267 0.0432 31 1 -0.3633 0.5508 0.8676 32 1 -0.3633 0.4759 -0.9109 33 1 2.6328 1.0805 -2.0846 34 1 2.1690 1.4924 -4.7072 35 1 3.8832 1.0748 -4.4719 36 1 3.3548 -0.4806 -10.1308 37 1 3.1861 -2.5961 -0.8067 38 1 4.2042 -1.1923 -1.2494 39 1 3.7694 -1.9801 1.3750 40 1 4.1094 -0.2865 0.9068 41 1 3.0053 -1.4311 3.5418 42 1 1.1403 3.0369 3.2956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091932099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:25 Heat of formation + Delta-G solvation = 66.780047 kcal Electronic energy + Delta-G solvation = -26454.968798 eV Core-core repulsion = 22562.397251 eV Total energy + Delta-G solvation = -3892.571547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.16614 -40.22175 -38.69694 -37.11927 -35.22914 -34.53292 -32.48756 -32.45006 -31.86113 -30.30048 -28.78986 -25.87788 -25.57558 -25.24213 -24.98467 -22.16729 -21.07343 -20.35146 -20.07377 -18.37231 -18.10445 -17.79666 -16.55457 -16.22349 -16.02964 -15.65213 -15.33650 -15.02535 -14.84998 -14.81768 -14.80098 -14.04681 -13.79572 -13.69629 -13.54735 -13.43804 -13.18545 -12.89294 -12.66341 -12.54601 -12.38525 -12.29394 -12.12328 -11.91254 -11.77357 -11.47341 -11.10233 -11.06390 -10.98580 -10.79003 -10.65060 -9.92161 -9.84670 -9.50144 -9.12286 -9.04573 -9.00729 -8.28378 -6.54600 -6.25842 -3.96594 -0.31734 0.36288 1.93011 2.15755 2.60075 2.88097 2.97405 3.01367 3.16655 3.18692 3.24996 3.28925 3.46165 3.66766 3.80303 3.89775 3.99228 4.16439 4.24407 4.46540 4.60987 4.72123 4.78025 4.82447 4.93640 5.09335 5.09697 5.18079 5.22145 5.34101 5.44831 5.57013 5.62735 5.68307 5.78810 5.82916 5.88395 6.00910 6.08029 6.22899 6.47543 6.55262 6.84282 6.97307 7.55594 7.57561 8.31425 8.50445 9.19902 10.81608 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.001843 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.127923 B =15190.041355 C =15840.581005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.086 0.914 4 C 0.145 3.855 5 H 0.106 0.894 6 N -0.733 5.733 7 C 0.535 3.465 8 O -0.513 6.513 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.138 4.138 20 C 0.041 3.959 21 N -0.443 5.443 22 C 0.292 3.708 23 C 0.058 3.942 24 N -0.384 5.384 25 C 0.096 3.904 26 C 0.272 3.728 27 N -0.385 5.385 28 C 0.142 3.858 29 N -0.470 5.470 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.184 0.816 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 1.822 25.474 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.041 4.041 3 H 0.104 0.896 4 C 0.038 3.962 5 H 0.124 0.876 6 N -0.388 5.388 7 C 0.321 3.679 8 O -0.386 6.386 9 C -0.305 4.305 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.205 1.205 19 C -0.177 4.177 20 C -0.084 4.084 21 N -0.160 5.160 22 C 0.055 3.945 23 C -0.112 4.112 24 N -0.099 5.099 25 C -0.043 4.043 26 C -0.046 4.046 27 N -0.062 5.062 28 C -0.021 4.021 29 N -0.188 5.188 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.201 0.799 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.716 0.283 26.367 26.508 hybrid contribution 1.057 2.944 -0.739 3.214 sum -1.659 3.227 25.628 25.883 Atomic orbital electron populations 1.21699 0.92101 1.02796 1.02694 1.22908 0.97657 0.96711 0.86829 0.89590 1.21658 0.96635 0.91674 0.86219 0.87629 1.46102 1.72920 1.13253 1.06527 1.20324 0.76069 0.88979 0.82521 1.90713 1.46998 1.18409 1.82486 1.23540 1.04218 1.02202 1.00522 1.85402 1.90441 1.15103 0.92311 1.22905 1.54040 0.97172 0.94294 0.90868 1.24993 0.94834 0.96457 0.97285 1.70022 1.45966 1.20388 1.13855 0.86121 0.78298 0.81061 0.80038 1.19624 1.20561 1.20542 1.22865 0.99419 1.02515 0.92878 1.23359 0.85631 1.01601 0.97817 1.62207 1.19179 1.32384 1.02265 1.21365 0.90825 0.88164 0.94182 1.23400 1.00029 1.00968 0.86754 1.68259 1.10003 1.02571 1.29087 1.17151 1.04860 0.92019 0.90267 1.24633 0.94372 0.93352 0.92239 1.81301 1.07181 1.09051 1.08685 1.23635 0.92064 1.00043 0.86358 1.68615 1.17875 1.03470 1.28879 0.91722 0.91770 0.91234 0.76793 0.89156 0.89232 0.92203 0.89270 0.89467 0.88210 0.91984 0.79895 0.80122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.25 37.16 0.34 -0.72 16 2 C 0.07 0.50 2.14 -66.07 -0.14 0.36 16 3 H 0.09 0.65 6.85 -51.93 -0.36 0.29 16 4 C 0.14 1.39 2.91 -66.55 -0.19 1.20 16 5 H 0.11 1.24 7.37 -51.93 -0.38 0.86 16 6 N -0.73 -8.21 5.04 -52.46 -0.26 -8.48 16 7 C 0.53 8.91 7.84 -10.98 -0.09 8.83 16 8 O -0.51 -10.61 15.56 5.55 0.09 -10.52 16 9 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 10 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 11 C -0.54 -14.83 9.50 30.94 0.29 -14.54 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 15 Si 0.92 20.94 29.55 -169.99 -5.02 15.92 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.14 -1.12 6.78 -25.35 -0.17 -1.29 16 20 C 0.04 0.23 5.90 -2.17 -0.01 0.21 16 21 N -0.44 -2.93 5.10 -161.20 -0.82 -3.76 16 22 C 0.29 1.90 6.08 -154.91 -0.94 0.95 16 23 C 0.06 0.33 10.55 -17.10 -0.18 0.15 16 24 N -0.38 -2.80 10.41 -10.72 -0.11 -2.92 16 25 C 0.10 0.64 6.58 -84.83 -0.56 0.08 16 26 C 0.27 2.16 15.56 -22.47 -0.35 1.81 16 27 N -0.39 -3.87 18.54 41.84 0.78 -3.09 16 28 C 0.14 0.75 10.92 -16.98 -0.19 0.56 16 29 N -0.47 -3.12 7.67 -11.93 -0.09 -3.21 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.50 7.20 -51.93 -0.37 0.13 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 3.44 8.34 -40.82 -0.34 3.09 16 34 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 35 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.79 7.95 -51.93 -0.41 0.38 16 39 H 0.10 0.36 8.02 -51.93 -0.42 -0.06 16 40 H 0.06 0.32 7.98 -51.93 -0.41 -0.09 16 41 H 0.18 0.60 7.89 -52.49 -0.41 0.19 16 42 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -34.79 379.13 -8.47 -43.26 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.19 Total: -1.21 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.06 Total: -3.09 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.22 Total: -46.31 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.79 -8.47 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091932099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.038 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds