Wall clock time and date at job start Wed Apr 1 2020 04:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39410 * 120.06402 * 320.31586 * 3 2 1 5 5 N 1.32141 * 120.04695 * 179.97438 * 4 3 2 6 6 C 1.31972 * 120.18067 * 359.70848 * 5 4 3 7 7 C 1.39571 * 120.12471 * 0.56206 * 6 5 4 8 8 N 1.38982 * 120.02316 * 179.70483 * 7 6 5 9 9 C 1.46502 * 119.99697 * 359.73745 * 8 7 6 10 10 C 1.53787 * 113.61178 * 204.99806 * 9 8 7 11 11 C 1.53784 * 87.07923 * 220.01667 * 10 9 8 12 12 C 1.52997 * 113.61330 * 139.97966 * 11 10 9 13 13 N 1.46499 * 109.47084 * 174.99792 * 12 11 10 14 14 C 1.34774 * 120.00234 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00101 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00231 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47263 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00035 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00261 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99997 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00223 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46895 * 59.99836 * 22 20 18 24 24 H 1.48495 * 109.47172 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47119 * 300.00360 * 22 20 18 26 26 C 1.53778 * 113.61780 * 107.50132 * 9 8 7 27 27 N 1.32404 * 119.95616 * 359.43979 * 7 6 5 28 28 H 1.08001 * 119.98048 * 359.95517 * 4 3 2 29 29 H 1.07997 * 119.93904 * 180.30266 * 6 5 4 30 30 H 0.97000 * 120.00393 * 179.72624 * 8 7 6 31 31 H 1.08998 * 112.90669 * 336.24125 * 9 8 7 32 32 H 1.09004 * 113.61202 * 334.56420 * 10 9 8 33 33 H 1.08994 * 113.61447 * 105.46851 * 10 9 8 34 34 H 1.09000 * 113.61578 * 270.88484 * 11 10 9 35 35 H 1.09004 * 109.47170 * 294.99762 * 12 11 10 36 36 H 1.08995 * 109.47328 * 55.00254 * 12 11 10 37 37 H 0.97005 * 119.99932 * 0.02562 * 13 12 11 38 38 H 1.08993 * 109.47479 * 300.01119 * 16 14 13 39 39 H 1.09007 * 109.46801 * 60.00608 * 16 14 13 40 40 H 0.96998 * 120.00597 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.61111 * 254.52914 * 26 9 8 42 42 H 1.09004 * 113.61682 * 25.42310 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2668 -0.9276 0.7704 5 7 4.5883 -0.9270 0.7698 6 6 5.2510 -0.0527 0.0363 7 6 4.5588 0.8836 -0.7334 8 7 5.2589 1.8074 -1.5002 9 6 6.7240 1.8023 -1.4963 10 6 7.3456 3.1632 -1.8521 11 6 8.3915 2.3839 -2.6668 12 6 8.7510 3.0481 -3.9974 13 7 9.8339 2.2994 -4.6401 14 6 10.3175 2.7030 -5.8315 15 8 9.8567 3.6864 -6.3714 16 6 11.4318 1.9331 -6.4924 17 16 11.8571 2.7188 -8.0665 18 6 13.1452 1.6446 -8.6064 19 1 13.4371 0.8023 -7.9967 20 6 13.7840 1.8803 -9.8160 21 7 13.4280 2.9065 -10.5594 22 14 15.1491 0.7410 -10.3888 23 1 14.6172 -0.6386 -10.5268 24 1 15.6646 1.2069 -11.7012 25 1 16.2511 0.7493 -9.3934 26 6 7.3417 1.2680 -2.7993 27 7 3.2348 0.8877 -0.7366 28 1 2.7279 -1.6475 1.3685 29 1 6.3309 -0.0588 0.0349 30 1 4.7776 2.4553 -2.0382 31 1 7.1443 1.3521 -0.5970 32 1 6.6978 3.7930 -2.4619 33 1 7.7641 3.6897 -0.9944 34 1 9.2677 2.0925 -2.0876 35 1 7.8769 3.0538 -4.6486 36 1 9.0757 4.0727 -3.8160 37 1 10.2022 1.5126 -4.2084 38 1 12.3059 1.9280 -5.8413 39 1 11.1077 0.9082 -6.6733 40 1 13.8746 3.0714 -11.4045 41 1 7.7570 0.2645 -2.7062 42 1 6.6929 1.3796 -3.6680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092207390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:20 Heat of formation + Delta-G solvation = 44.541954 kcal Electronic energy + Delta-G solvation = -25102.464395 eV Core-core repulsion = 21208.928532 eV Total energy + Delta-G solvation = -3893.535863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.23344 -40.86615 -39.96145 -37.92923 -36.52359 -35.41871 -34.63813 -34.56022 -31.61969 -30.86022 -28.17181 -27.55270 -26.85489 -26.54181 -24.93500 -23.21476 -21.82264 -20.72238 -20.34675 -19.74750 -19.00069 -17.93777 -17.76345 -17.50643 -17.11196 -16.86170 -16.65127 -16.44892 -16.10628 -15.99075 -15.62258 -14.98365 -14.69196 -14.61340 -14.49430 -14.37604 -14.28618 -13.99326 -13.68783 -13.33521 -13.20768 -13.15265 -12.99936 -12.84803 -12.68908 -12.64036 -12.47077 -12.05033 -11.76861 -11.65237 -11.33793 -11.11297 -11.03080 -10.85268 -10.33237 -10.25445 -10.03465 -8.92017 -8.65025 -8.32973 -6.11102 -0.68321 0.17320 1.19257 1.29496 1.45251 1.49236 1.58857 1.66237 1.72205 1.95634 2.28591 2.35665 2.44374 2.78374 3.01267 3.27362 3.34308 3.36307 3.53842 3.63666 3.78018 3.85315 3.89267 4.02275 4.08127 4.32470 4.33765 4.38966 4.50531 4.54724 4.75391 4.87766 4.90070 4.92736 5.09719 5.16325 5.18956 5.39160 5.43148 5.55421 5.71743 6.11634 6.21062 6.31131 6.44083 6.58205 6.79551 7.08361 7.31498 8.75926 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.001398 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.870498 B =20019.711106 C =20250.823333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.289 3.711 3 C 0.182 3.818 4 C 0.041 3.959 5 N -0.411 5.411 6 C 0.036 3.964 7 C 0.363 3.637 8 N -0.693 5.693 9 C 0.131 3.869 10 C -0.130 4.130 11 C -0.110 4.110 12 C 0.130 3.870 13 N -0.709 5.709 14 C 0.530 3.470 15 O -0.571 6.571 16 C -0.130 4.130 17 S -0.156 6.156 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.261 1.261 26 C -0.151 4.151 27 N -0.507 5.507 28 H 0.200 0.800 29 H 0.205 0.795 30 H 0.410 0.590 31 H 0.142 0.858 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.418 0.582 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.091 0.909 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.791 -8.172 28.683 32.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.028 4.028 3 C 0.042 3.958 4 C -0.120 4.120 5 N -0.123 5.123 6 C -0.135 4.135 7 C 0.120 3.880 8 N -0.324 5.324 9 C 0.027 3.973 10 C -0.169 4.169 11 C -0.129 4.129 12 C 0.006 3.994 13 N -0.363 5.363 14 C 0.316 3.684 15 O -0.449 6.449 16 C -0.281 4.281 17 S 0.071 5.929 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.190 4.190 27 N -0.232 5.232 28 H 0.217 0.783 29 H 0.222 0.778 30 H 0.247 0.753 31 H 0.160 0.840 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.140 -6.472 27.702 32.708 hybrid contribution 1.307 -1.168 -0.574 1.845 sum -14.832 -7.640 27.129 31.849 Atomic orbital electron populations 1.81306 1.12484 1.07877 1.07981 1.24953 0.91535 0.93137 0.93215 1.16977 0.86015 0.95424 0.97414 1.23676 0.90449 0.98733 0.99166 1.68508 1.08043 1.19877 1.15895 1.24009 1.03180 0.91893 0.94462 1.19457 0.87471 0.90454 0.90614 1.44783 1.05938 1.34188 1.47488 1.22855 0.76551 0.98255 0.99644 1.23327 0.96788 0.96149 1.00601 1.22595 0.98757 0.97288 0.94289 1.21409 0.88936 0.95501 0.93544 1.45725 1.38306 1.32330 1.19916 1.20077 0.82762 0.84001 0.81547 1.90695 1.60877 1.28467 1.64891 1.23379 1.00366 1.03486 1.00847 1.85599 1.47071 1.41059 1.19186 1.23184 1.21922 1.15252 1.09113 0.89800 1.26118 1.00043 0.97405 0.95510 1.70176 1.42317 1.29270 1.13074 0.85018 0.77482 0.78065 0.77521 1.18663 1.20547 1.18562 1.23676 0.97314 0.99791 0.98209 1.67666 1.08422 1.24723 1.22407 0.78330 0.77811 0.75279 0.84019 0.89551 0.88487 0.85486 0.92953 0.92518 0.74480 0.87081 0.87237 0.92042 0.89070 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.50 18.54 19.00 0.35 -8.15 16 2 C 0.29 4.58 15.56 88.33 1.37 5.96 16 3 C 0.18 2.31 6.58 40.47 0.27 2.58 16 4 C 0.04 0.36 10.92 84.93 0.93 1.29 16 5 N -0.41 -3.99 10.48 -193.54 -2.03 -6.01 16 6 C 0.04 0.25 10.44 84.99 0.89 1.14 16 7 C 0.36 3.48 7.66 133.18 1.02 4.50 16 8 N -0.69 -4.29 5.53 -321.67 -1.78 -6.07 16 9 C 0.13 0.26 4.03 45.52 0.18 0.45 16 10 C -0.13 -0.46 7.39 31.12 0.23 -0.23 16 11 C -0.11 -0.64 3.75 -10.27 -0.04 -0.67 16 12 C 0.13 2.14 5.51 86.38 0.48 2.62 16 13 N -0.71 -14.59 5.56 -463.07 -2.57 -17.17 16 14 C 0.53 18.16 7.85 87.66 0.69 18.85 16 15 O -0.57 -25.49 15.86 -3.03 -0.05 -25.54 16 16 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 17 S -0.16 -8.52 20.57 -56.49 -1.16 -9.68 16 18 C -0.55 -30.65 9.50 67.95 0.65 -30.01 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 22 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 C -0.15 -0.75 7.43 31.12 0.23 -0.52 16 27 N -0.51 -7.23 10.46 -186.03 -1.95 -9.17 16 28 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 29 H 0.21 -0.01 6.04 -2.91 -0.02 -0.03 16 30 H 0.41 2.93 8.85 -92.71 -0.82 2.11 16 31 H 0.14 -0.42 6.13 -2.39 -0.01 -0.44 16 32 H 0.09 0.48 8.08 -2.39 -0.02 0.46 16 33 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.05 1.05 7.84 -2.38 -0.02 1.03 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.42 5.40 8.47 -92.70 -0.79 4.61 16 38 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 39 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.07 0.70 7.90 -2.38 -0.02 0.68 16 Total: -1.00 -83.82 385.70 0.42 -83.40 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -0.51 Total: 6.07 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 7.80 Total: 2.80 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -7.69 Total: -101.83 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -83.82 0.42 -83.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092207390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.942 kcal (2) G-P(sol) polarization free energy of solvation -83.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds