Wall clock time and date at job start Wed Apr 1 2020 03:59:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13595 * 1
3 3 C 1.43206 * 179.97438 * 2 1
4 4 N 1.33038 * 120.17275 * 298.03423 * 3 2 1
5 5 C 1.31836 * 119.99259 * 180.30372 * 4 3 2
6 6 C 1.38654 * 120.34941 * 359.70662 * 5 4 3
7 7 N 1.32120 * 120.35072 * 359.97438 * 6 5 4
8 8 C 1.32735 * 120.00059 * 0.02562 * 7 6 5
9 9 N 1.38405 * 120.17212 * 180.02562 * 8 7 6
10 10 C 1.46499 * 119.99928 * 0.02562 * 9 8 7
11 11 C 1.53045 * 109.45568 * 275.06631 * 10 9 8
12 12 C 1.53191 * 109.30971 * 178.61874 * 11 10 9
13 13 N 1.46931 * 108.77961 * 54.63293 * 12 11 10
14 14 C 1.34775 * 120.63085 * 126.36726 * 13 12 11
15 15 O 1.21280 * 119.99860 * 180.02562 * 14 13 12
16 16 C 1.50697 * 120.00015 * 0.02957 * 14 13 12
17 17 S 1.81003 * 109.47381 * 179.97438 * 16 14 13
18 18 C 1.76198 * 100.00216 * 179.97438 * 17 16 14
19 19 H 1.08003 * 119.99934 * 359.97438 * 18 17 16
20 20 C 1.38800 * 120.00086 * 179.97438 * 18 17 16
21 21 N 1.31631 * 119.99862 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 119.99912 * 180.02562 * 20 18 17
23 23 H 1.48492 * 109.47160 * 60.00171 * 22 20 18
24 24 H 1.48501 * 109.46721 * 180.02562 * 22 20 18
25 25 H 1.48501 * 109.47228 * 299.99694 * 22 20 18
26 26 C 1.46921 * 118.73607 * 306.39577 * 13 12 11
27 27 C 1.53036 * 109.45852 * 155.00298 * 10 9 8
28 28 H 1.07994 * 119.83055 * 179.68333 * 5 4 3
29 29 H 1.07991 * 119.82396 * 179.97438 * 6 5 4
30 30 H 0.97005 * 119.99811 * 179.97438 * 9 8 7
31 31 H 1.08992 * 109.46152 * 35.02978 * 10 9 8
32 32 H 1.08996 * 109.49692 * 298.56114 * 11 10 9
33 33 H 1.08993 * 109.49810 * 58.66748 * 11 10 9
34 34 H 1.09008 * 109.58869 * 294.85062 * 12 11 10
35 35 H 1.09000 * 109.59000 * 174.42444 * 12 11 10
36 36 H 1.09010 * 109.47111 * 299.99645 * 16 14 13
37 37 H 1.08998 * 109.47246 * 59.99462 * 16 14 13
38 38 H 0.96997 * 119.99922 * 179.97438 * 21 20 18
39 39 H 1.09000 * 109.59030 * 293.81584 * 26 13 12
40 40 H 1.09008 * 109.70345 * 173.46354 * 26 13 12
41 41 H 1.09008 * 109.49585 * 301.33111 * 27 10 9
42 42 H 1.08999 * 109.50027 * 61.39543 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 7 3.2369 -0.5396 1.0152
5 6 4.5553 -0.5317 1.0144
6 6 5.2518 0.0322 -0.0436
7 7 4.6014 0.5669 -1.0617
8 6 3.2741 0.5665 -1.0753
9 7 2.5892 1.1252 -2.1403
10 6 3.3292 1.7185 -3.2569
11 6 3.6900 3.1665 -2.9172
12 6 4.4933 3.7727 -4.0722
13 7 3.7251 3.6179 -5.3150
14 6 3.4607 4.6839 -6.0962
15 8 2.8251 4.5430 -7.1195
16 6 3.9548 6.0507 -5.6981
17 16 3.4436 7.2628 -6.9414
18 6 4.1333 8.7264 -6.2436
19 1 4.6770 8.6760 -5.3118
20 6 3.9777 9.9441 -6.8914
21 7 3.3145 10.0055 -8.0268
22 14 4.7094 11.4956 -6.1520
23 1 6.1811 11.3394 -6.0303
24 1 4.4049 12.6536 -7.0302
25 1 4.1233 11.7271 -4.8073
26 6 3.2502 2.2790 -5.6898
27 6 2.4608 1.6895 -4.5166
28 1 5.0956 -0.9665 1.8422
29 1 6.3317 0.0344 -0.0353
30 1 1.6192 1.1233 -2.1478
31 1 4.2416 1.1484 -3.4315
32 1 2.7774 3.7432 -2.7668
33 1 4.2889 3.1882 -2.0068
34 1 5.4475 3.2540 -4.1655
35 1 4.6678 4.8313 -3.8799
36 1 3.5325 6.3222 -4.7305
37 1 5.0425 6.0381 -5.6292
38 1 3.2054 10.8565 -8.4793
39 1 4.1029 1.6385 -5.9149
40 1 2.6050 2.3497 -6.5656
41 1 2.1848 0.6599 -4.7446
42 1 1.5595 2.2796 -4.3509
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001095214953.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:44
Heat of formation + Delta-G solvation = 54.394203 kcal
Electronic energy + Delta-G solvation = -26617.573107 eV
Core-core repulsion = 22724.464470 eV
Total energy + Delta-G solvation = -3893.108637 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.116 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.75223 -40.08832 -38.11245 -37.13615 -35.95213 -34.41726 -32.72872 -32.45305
-31.60697 -30.19675 -28.85682 -26.31666 -25.58689 -25.20491 -23.69428 -23.23021
-21.34848 -20.10524 -19.43399 -18.50894 -18.13244 -17.72210 -16.81638 -16.00719
-15.85451 -15.69245 -15.39153 -15.37950 -14.82782 -14.61571 -14.54628 -14.21154
-13.95696 -13.74690 -13.54553 -13.44107 -13.21048 -13.01958 -12.79061 -12.52954
-12.34348 -12.18436 -12.08441 -11.87663 -11.55284 -11.42630 -11.06768 -11.06011
-10.94693 -10.78787 -10.64596 -9.84056 -9.78835 -9.42554 -9.08409 -8.66111
-8.53642 -8.26241 -6.53339 -6.23918 -3.95001 -0.07690 0.66704 1.99980
2.28080 2.37142 2.85598 2.98089 3.03074 3.21542 3.23247 3.27176
3.33519 3.53857 3.59730 3.93530 4.17556 4.21213 4.30800 4.42135
4.55387 4.68313 4.70013 4.77970 4.87851 5.01086 5.11156 5.14149
5.24212 5.36622 5.49299 5.51215 5.56508 5.60486 5.69990 5.80929
5.82278 5.91446 6.06995 6.27219 6.34066 6.54133 6.79178 6.99124
7.25682 7.46071 7.56728 8.32348 8.48722 9.21206 10.83421
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.016549 B = 0.002064 C = 0.001983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1691.567441 B =13565.550114 C =14119.009765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.389 5.389
2 C 0.268 3.732
3 C 0.061 3.939
4 N -0.365 5.365
5 C -0.013 4.013
6 C 0.144 3.856
7 N -0.491 5.491
8 C 0.410 3.590
9 N -0.695 5.695
10 C 0.152 3.848
11 C -0.145 4.145
12 C 0.113 3.887
13 N -0.623 5.623
14 C 0.536 3.464
15 O -0.516 6.516
16 C -0.151 4.151
17 S -0.061 6.061
18 C -0.536 4.536
19 H 0.072 0.928
20 C 0.074 3.926
21 N -0.867 5.867
22 Si 0.919 3.081
23 H -0.274 1.274
24 H -0.283 1.283
25 H -0.274 1.274
26 C 0.119 3.881
27 C -0.145 4.145
28 H 0.178 0.822
29 H 0.181 0.819
30 H 0.412 0.588
31 H 0.100 0.900
32 H 0.071 0.929
33 H 0.081 0.919
34 H 0.072 0.928
35 H 0.094 0.906
36 H 0.089 0.911
37 H 0.090 0.910
38 H 0.269 0.731
39 H 0.068 0.932
40 H 0.100 0.900
41 H 0.081 0.919
42 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.168 -23.037 16.993 29.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.066 5.066
2 C -0.050 4.050
3 C -0.087 4.087
4 N -0.080 5.080
5 C -0.179 4.179
6 C -0.021 4.021
7 N -0.214 5.214
8 C 0.167 3.833
9 N -0.323 5.323
10 C 0.048 3.952
11 C -0.184 4.184
12 C -0.011 4.011
13 N -0.359 5.359
14 C 0.324 3.676
15 O -0.390 6.390
16 C -0.302 4.302
17 S 0.166 5.834
18 C -0.684 4.684
19 H 0.090 0.910
20 C -0.136 4.136
21 N -0.502 5.502
22 Si 0.745 3.255
23 H -0.199 1.199
24 H -0.208 1.208
25 H -0.200 1.200
26 C -0.004 4.004
27 C -0.184 4.184
28 H 0.195 0.805
29 H 0.198 0.802
30 H 0.250 0.750
31 H 0.118 0.882
32 H 0.089 0.911
33 H 0.099 0.901
34 H 0.090 0.910
35 H 0.112 0.888
36 H 0.107 0.893
37 H 0.108 0.892
38 H 0.079 0.921
39 H 0.086 0.914
40 H 0.118 0.882
41 H 0.100 0.900
42 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 3.455 -23.013 15.085 27.733
hybrid contribution 1.342 1.117 1.947 2.615
sum 4.797 -21.896 17.032 28.152
Atomic orbital electron populations
1.81322 1.11148 1.07832 1.06328 1.24733 0.91373 0.94261 0.94584
1.16471 0.86952 1.09982 0.95311 1.68104 1.09844 1.08716 1.21375
1.23467 0.89256 1.03933 1.01293 1.23953 1.02062 0.88355 0.87776
1.68252 1.05166 1.20675 1.27298 1.19010 0.89510 0.88071 0.86683
1.44891 1.08872 1.59876 1.18683 1.21154 0.95816 0.94051 0.84221
1.22352 1.01633 0.95387 0.99065 1.21666 0.94031 1.02719 0.82677
1.48152 1.56362 1.07466 1.23949 1.20349 0.78814 0.85406 0.83004
1.90696 1.38804 1.85049 1.24402 1.23558 1.04185 0.96084 1.06331
1.85413 1.72459 0.98003 1.27549 1.22808 1.40845 0.93487 1.11271
0.90992 1.24992 0.95033 0.98751 0.94788 1.70005 1.38459 1.26555
1.15225 0.86226 0.79431 0.80928 0.78938 1.19906 1.20800 1.19952
1.21403 0.98683 0.82983 0.97344 1.22259 0.99440 1.02293 0.94373
0.80453 0.80190 0.75045 0.88235 0.91055 0.90054 0.90964 0.88769
0.89292 0.89187 0.92105 0.91369 0.88208 0.90037 0.90645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.39 -4.42 18.54 41.84 0.78 -3.65 16
2 C 0.27 2.57 14.32 -22.47 -0.32 2.25 16
3 C 0.06 0.50 6.61 -84.55 -0.56 -0.06 16
4 N -0.37 -2.81 10.42 -10.74 -0.11 -2.92 16
5 C -0.01 -0.06 11.21 -17.40 -0.19 -0.25 16
6 C 0.14 0.54 11.22 -17.27 -0.19 0.35 16
7 N -0.49 -3.17 9.36 -11.97 -0.11 -3.28 16
8 C 0.41 3.02 7.46 -154.78 -1.15 1.86 16
9 N -0.70 -4.83 5.13 -53.59 -0.28 -5.11 16
10 C 0.15 1.08 2.43 -67.89 -0.17 0.92 16
11 C -0.14 -1.17 5.66 -26.61 -0.15 -1.32 16
12 C 0.11 1.08 6.34 -3.71 -0.02 1.06 16
13 N -0.62 -7.92 2.97 -172.76 -0.51 -8.43 16
14 C 0.54 9.67 7.72 -10.99 -0.08 9.59 16
15 O -0.52 -11.33 15.28 5.56 0.08 -11.25 16
16 C -0.15 -2.95 4.50 36.00 0.16 -2.79 16
17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16
18 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16
19 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16
20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16
21 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16
22 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16
23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
26 C 0.12 1.23 6.43 -3.71 -0.02 1.21 16
27 C -0.14 -1.12 5.55 -26.61 -0.15 -1.27 16
28 H 0.18 0.17 8.06 -52.49 -0.42 -0.25 16
29 H 0.18 0.01 8.06 -52.49 -0.42 -0.41 16
30 H 0.41 2.77 7.45 -40.82 -0.30 2.47 16
31 H 0.10 0.71 7.55 -51.93 -0.39 0.32 16
32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16
35 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16
36 H 0.09 1.61 7.69 -51.91 -0.40 1.21 16
37 H 0.09 1.62 7.94 -51.92 -0.41 1.21 16
38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
40 H 0.10 1.23 7.01 -51.92 -0.36 0.87 16
41 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16
42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
LS Contribution 375.47 15.07 5.66 5.66
Total: -1.00 -36.04 375.47 -8.76 -44.81
By element:
Atomic # 1 Polarization: 3.41 SS G_CDS: -5.11 Total: -1.70 kcal
Atomic # 6 Polarization: 1.44 SS G_CDS: -2.66 Total: -1.22 kcal
Atomic # 7 Polarization: -49.08 SS G_CDS: 0.50 Total: -48.59 kcal
Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -36.04 -8.76 -44.81 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001095214953.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.200 kcal
(2) G-P(sol) polarization free energy of solvation -36.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.156 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.394 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds