Wall clock time and date at job start Wed Apr 1 2020 03:59:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13595 * 1
3 3 C 1.43206 * 179.97438 * 2 1
4 4 N 1.33038 * 120.17275 * 298.03423 * 3 2 1
5 5 C 1.31836 * 119.99259 * 180.30372 * 4 3 2
6 6 C 1.38654 * 120.34941 * 359.70662 * 5 4 3
7 7 N 1.32120 * 120.35072 * 359.97438 * 6 5 4
8 8 C 1.32735 * 120.00059 * 0.02562 * 7 6 5
9 9 N 1.38405 * 120.17212 * 180.02562 * 8 7 6
10 10 C 1.46499 * 119.99928 * 0.02562 * 9 8 7
11 11 C 1.53045 * 109.45568 * 275.06631 * 10 9 8
12 12 C 1.53191 * 109.30971 * 178.61874 * 11 10 9
13 13 N 1.46931 * 108.77961 * 54.63293 * 12 11 10
14 14 C 1.34775 * 120.63085 * 126.36726 * 13 12 11
15 15 O 1.21280 * 119.99860 * 180.02562 * 14 13 12
16 16 C 1.50697 * 120.00015 * 0.02957 * 14 13 12
17 17 S 1.81003 * 109.47381 * 179.97438 * 16 14 13
18 18 C 1.76198 * 100.00216 * 179.97438 * 17 16 14
19 19 H 1.08003 * 119.99934 * 359.97438 * 18 17 16
20 20 C 1.38800 * 120.00086 * 179.97438 * 18 17 16
21 21 N 1.31631 * 119.99862 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 119.99912 * 180.02562 * 20 18 17
23 23 H 1.48492 * 109.47160 * 60.00171 * 22 20 18
24 24 H 1.48501 * 109.46721 * 180.02562 * 22 20 18
25 25 H 1.48501 * 109.47228 * 299.99694 * 22 20 18
26 26 C 1.46921 * 118.73607 * 306.39577 * 13 12 11
27 27 C 1.53036 * 109.45852 * 155.00298 * 10 9 8
28 28 H 1.07994 * 119.83055 * 179.68333 * 5 4 3
29 29 H 1.07991 * 119.82396 * 179.97438 * 6 5 4
30 30 H 0.97005 * 119.99811 * 179.97438 * 9 8 7
31 31 H 1.08992 * 109.46152 * 35.02978 * 10 9 8
32 32 H 1.08996 * 109.49692 * 298.56114 * 11 10 9
33 33 H 1.08993 * 109.49810 * 58.66748 * 11 10 9
34 34 H 1.09008 * 109.58869 * 294.85062 * 12 11 10
35 35 H 1.09000 * 109.59000 * 174.42444 * 12 11 10
36 36 H 1.09010 * 109.47111 * 299.99645 * 16 14 13
37 37 H 1.08998 * 109.47246 * 59.99462 * 16 14 13
38 38 H 0.96997 * 119.99922 * 179.97438 * 21 20 18
39 39 H 1.09000 * 109.59030 * 293.81584 * 26 13 12
40 40 H 1.09008 * 109.70345 * 173.46354 * 26 13 12
41 41 H 1.09008 * 109.49585 * 301.33111 * 27 10 9
42 42 H 1.08999 * 109.50027 * 61.39543 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 7 3.2369 -0.5396 1.0152
5 6 4.5553 -0.5317 1.0144
6 6 5.2518 0.0322 -0.0436
7 7 4.6014 0.5669 -1.0617
8 6 3.2741 0.5665 -1.0753
9 7 2.5892 1.1252 -2.1403
10 6 3.3292 1.7185 -3.2569
11 6 3.6900 3.1665 -2.9172
12 6 4.4933 3.7727 -4.0722
13 7 3.7251 3.6179 -5.3150
14 6 3.4607 4.6839 -6.0962
15 8 2.8251 4.5430 -7.1195
16 6 3.9548 6.0507 -5.6981
17 16 3.4436 7.2628 -6.9414
18 6 4.1333 8.7264 -6.2436
19 1 4.6770 8.6760 -5.3118
20 6 3.9777 9.9441 -6.8914
21 7 3.3145 10.0055 -8.0268
22 14 4.7094 11.4956 -6.1520
23 1 6.1811 11.3394 -6.0303
24 1 4.4049 12.6536 -7.0302
25 1 4.1233 11.7271 -4.8073
26 6 3.2502 2.2790 -5.6898
27 6 2.4608 1.6895 -4.5166
28 1 5.0956 -0.9665 1.8422
29 1 6.3317 0.0344 -0.0353
30 1 1.6192 1.1233 -2.1478
31 1 4.2416 1.1484 -3.4315
32 1 2.7774 3.7432 -2.7668
33 1 4.2889 3.1882 -2.0068
34 1 5.4475 3.2540 -4.1655
35 1 4.6678 4.8313 -3.8799
36 1 3.5325 6.3222 -4.7305
37 1 5.0425 6.0381 -5.6292
38 1 3.2054 10.8565 -8.4793
39 1 4.1029 1.6385 -5.9149
40 1 2.6050 2.3497 -6.5656
41 1 2.1848 0.6599 -4.7446
42 1 1.5595 2.2796 -4.3509
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001095214953.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:43
Heat of formation + Delta-G solvation = 29.086909 kcal
Electronic energy + Delta-G solvation = -26618.670514 eV
Core-core repulsion = 22724.464470 eV
Total energy + Delta-G solvation = -3894.206044 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.116 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.20762 -41.17314 -39.05289 -37.86180 -36.78290 -34.94020 -34.58310 -33.55716
-32.41892 -30.99903 -30.03395 -27.67828 -26.79196 -25.99189 -24.41968 -23.91702
-22.16165 -20.72499 -20.44734 -19.62646 -19.03363 -18.63242 -18.08907 -16.95816
-16.86795 -16.67448 -16.47690 -16.28369 -15.92905 -15.85953 -15.20264 -15.15569
-14.99349 -14.65710 -14.46354 -14.33261 -14.27250 -14.15282 -13.76956 -13.51120
-13.37965 -13.16810 -13.00013 -12.86401 -12.81262 -12.62971 -12.59303 -12.28018
-12.02543 -11.73979 -11.63357 -11.21969 -11.12712 -10.85487 -10.26296 -10.21643
-9.73038 -9.03266 -8.67240 -8.34302 -6.12688 -0.52718 0.25635 1.25802
1.32571 1.43988 1.46071 1.55009 1.55596 1.76983 1.79905 2.09945
2.27828 2.46347 2.86146 2.99773 3.19607 3.25113 3.47968 3.57139
3.74369 3.79401 3.85279 4.01674 4.08702 4.19253 4.25997 4.28320
4.39178 4.44690 4.50526 4.61146 4.72547 4.79616 4.83149 4.94052
5.01927 5.17657 5.31177 5.41585 5.56589 5.79138 5.85240 6.18096
6.19583 6.26616 6.48847 6.82120 7.06803 7.14182 8.74607
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.016549 B = 0.002064 C = 0.001983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1691.567441 B =13565.550114 C =14119.009765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.437 5.437
2 C 0.286 3.714
3 C 0.031 3.969
4 N -0.394 5.394
5 C -0.001 4.001
6 C 0.161 3.839
7 N -0.502 5.502
8 C 0.408 3.592
9 N -0.697 5.697
10 C 0.162 3.838
11 C -0.136 4.136
12 C 0.107 3.893
13 N -0.608 5.608
14 C 0.534 3.466
15 O -0.566 6.566
16 C -0.124 4.124
17 S -0.154 6.154
18 C -0.545 4.545
19 H 0.083 0.917
20 C 0.013 3.987
21 N -0.911 5.911
22 Si 0.998 3.002
23 H -0.260 1.260
24 H -0.280 1.280
25 H -0.263 1.263
26 C 0.116 3.884
27 C -0.135 4.135
28 H 0.214 0.786
29 H 0.225 0.775
30 H 0.411 0.589
31 H 0.111 0.889
32 H 0.055 0.945
33 H 0.093 0.907
34 H 0.101 0.899
35 H 0.089 0.911
36 H 0.105 0.895
37 H 0.110 0.890
38 H 0.271 0.729
39 H 0.096 0.904
40 H 0.075 0.925
41 H 0.101 0.899
42 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.523 -24.154 19.765 32.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.115 5.115
2 C -0.031 4.031
3 C -0.114 4.114
4 N -0.109 5.109
5 C -0.169 4.169
6 C -0.006 4.006
7 N -0.225 5.225
8 C 0.167 3.833
9 N -0.325 5.325
10 C 0.057 3.943
11 C -0.176 4.176
12 C -0.015 4.015
13 N -0.342 5.342
14 C 0.321 3.679
15 O -0.445 6.445
16 C -0.275 4.275
17 S 0.073 5.927
18 C -0.693 4.693
19 H 0.102 0.898
20 C -0.192 4.192
21 N -0.548 5.548
22 Si 0.819 3.181
23 H -0.184 1.184
24 H -0.205 1.205
25 H -0.187 1.187
26 C -0.007 4.007
27 C -0.174 4.174
28 H 0.230 0.770
29 H 0.241 0.759
30 H 0.248 0.752
31 H 0.129 0.871
32 H 0.074 0.926
33 H 0.112 0.888
34 H 0.119 0.881
35 H 0.108 0.892
36 H 0.123 0.877
37 H 0.128 0.872
38 H 0.080 0.920
39 H 0.114 0.886
40 H 0.093 0.907
41 H 0.119 0.881
42 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 6.790 -24.172 17.897 30.833
hybrid contribution 0.484 1.268 1.225 1.828
sum 7.275 -22.904 19.122 30.711
Atomic orbital electron populations
1.81317 1.12426 1.09814 1.07938 1.25096 0.91814 0.92897 0.93251
1.16374 0.86076 1.12391 0.96525 1.68093 1.11627 1.09562 1.21623
1.24182 0.88172 1.02371 1.02205 1.24734 1.03873 0.85732 0.86236
1.68350 1.04419 1.21278 1.28425 1.18978 0.89996 0.88021 0.86323
1.44821 1.08831 1.60068 1.18748 1.21026 0.95912 0.93552 0.83781
1.22271 1.00868 0.95671 0.98782 1.21957 0.94967 1.03184 0.81418
1.48140 1.55154 1.07019 1.23879 1.20106 0.78702 0.86001 0.83060
1.90680 1.41352 1.85706 1.26767 1.23375 1.05241 0.94892 1.03984
1.85602 1.73784 1.01213 1.32114 1.23154 1.40722 0.93793 1.11595
0.89843 1.26136 0.95290 1.02677 0.95108 1.70180 1.40114 1.27508
1.16989 0.85012 0.79014 0.75828 0.78205 1.18444 1.20519 1.18734
1.21601 0.99641 0.81891 0.97561 1.22155 0.98555 1.02894 0.93804
0.76957 0.75851 0.75218 0.87088 0.92639 0.88820 0.88070 0.89232
0.87712 0.87207 0.92028 0.88617 0.90696 0.88060 0.92092
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.44 -10.38 18.54 19.00 0.35 -10.03 16
2 C 0.29 5.59 14.32 88.33 1.27 6.85 16
3 C 0.03 0.48 6.61 40.77 0.27 0.75 16
4 N -0.39 -5.28 10.42 -187.88 -1.96 -7.24 16
5 C 0.00 -0.01 11.21 84.79 0.95 0.94 16
6 C 0.16 0.44 11.22 84.75 0.95 1.39 16
7 N -0.50 -4.61 9.36 -191.79 -1.79 -6.40 16
8 C 0.41 5.15 7.46 133.51 1.00 6.15 16
9 N -0.70 -8.59 5.13 -323.46 -1.66 -10.25 16
10 C 0.16 1.91 2.43 45.02 0.11 2.02 16
11 C -0.14 -1.88 5.66 30.67 0.17 -1.71 16
12 C 0.11 1.75 6.34 86.36 0.55 2.30 16
13 N -0.61 -14.69 2.97 -818.89 -2.43 -17.12 16
14 C 0.53 19.38 7.72 87.66 0.68 20.05 16
15 O -0.57 -25.94 15.28 -3.03 -0.05 -25.99 16
16 C -0.12 -4.83 4.50 71.24 0.32 -4.51 16
17 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16
18 C -0.54 -30.79 9.50 67.95 0.65 -30.15 16
19 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16
20 C 0.01 0.71 5.49 84.86 0.47 1.18 16
21 N -0.91 -55.88 13.22 21.65 0.29 -55.60 16
22 Si 1.00 43.15 29.55 68.60 2.03 45.18 16
23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16
24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16
25 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16
26 C 0.12 2.23 6.43 86.36 0.56 2.79 16
27 C -0.14 -1.90 5.55 30.67 0.17 -1.73 16
28 H 0.21 -0.66 8.06 -2.91 -0.02 -0.68 16
29 H 0.23 -1.42 8.06 -2.92 -0.02 -1.44 16
30 H 0.41 5.34 7.45 -92.70 -0.69 4.65 16
31 H 0.11 1.14 7.55 -2.39 -0.02 1.12 16
32 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16
33 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16
34 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16
35 H 0.09 1.59 5.93 -2.39 -0.01 1.57 16
36 H 0.10 3.72 7.69 -2.39 -0.02 3.71 16
37 H 0.11 3.82 7.94 -2.40 -0.02 3.80 16
38 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16
39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
40 H 0.07 1.88 7.01 -2.38 -0.02 1.86 16
41 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16
42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
Total: -1.00 -83.76 375.47 2.09 -81.66
By element:
Atomic # 1 Polarization: 8.76 SS G_CDS: 0.39 Total: 9.14 kcal
Atomic # 6 Polarization: -1.75 SS G_CDS: 8.10 Total: 6.34 kcal
Atomic # 7 Polarization: -99.44 SS G_CDS: -7.21 Total: -106.65 kcal
Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.99 kcal
Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal
Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal
Total: -83.76 2.09 -81.66 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001095214953.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.752 kcal
(2) G-P(sol) polarization free energy of solvation -83.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.087 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds