Wall clock time and date at job start Wed Apr 1 2020 04:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.31037 * 119.06524 * 288.46610 * 3 2 1 5 5 C 1.35160 * 120.54940 * 180.24301 * 4 3 2 6 6 N 1.31904 * 120.57412 * 179.75879 * 5 4 3 7 7 C 1.46499 * 120.00008 * 359.71634 * 6 5 4 8 8 C 1.53041 * 109.46179 * 240.03382 * 7 6 5 9 9 C 1.53188 * 109.31395 * 178.60116 * 8 7 6 10 10 N 1.46935 * 108.76618 * 54.65153 * 9 8 7 11 11 C 1.34776 * 120.63170 * 126.36176 * 10 9 8 12 12 O 1.21276 * 119.99872 * 180.02562 * 11 10 9 13 13 C 1.50703 * 119.99874 * 0.02562 * 11 10 9 14 14 S 1.80995 * 109.46951 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00034 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00469 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00387 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47404 * 89.99773 * 19 17 15 21 21 H 1.48505 * 109.46920 * 209.99691 * 19 17 15 22 22 H 1.48503 * 109.46906 * 329.99232 * 19 17 15 23 23 C 1.46925 * 118.73605 * 306.38478 * 10 9 8 24 24 C 1.53039 * 109.45954 * 119.97370 * 7 6 5 25 25 C 1.46884 * 118.85005 * 359.47908 * 5 4 3 26 26 C 1.34952 * 118.31160 * 0.25222 * 25 5 4 27 27 N 1.36210 * 119.06892 * 108.17791 * 3 2 1 28 28 H 0.97001 * 119.43441 * 0.02562 * 27 3 2 29 29 H 1.09009 * 109.45829 * 359.97438 * 7 6 5 30 30 H 1.09004 * 109.49319 * 298.56419 * 8 7 6 31 31 H 1.08997 * 109.50096 * 58.65626 * 8 7 6 32 32 H 1.08996 * 109.59965 * 294.86444 * 9 8 7 33 33 H 1.09002 * 109.70707 * 174.50044 * 9 8 7 34 34 H 1.08994 * 109.47006 * 300.00317 * 13 11 10 35 35 H 1.09000 * 109.46910 * 60.00127 * 13 11 10 36 36 H 0.96998 * 120.00475 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.58752 * 293.81603 * 23 10 9 38 38 H 1.09004 * 109.70148 * 173.46795 * 23 10 9 39 39 H 1.09001 * 109.49897 * 301.33598 * 24 7 6 40 40 H 1.08996 * 109.49710 * 61.40263 * 24 7 6 41 41 H 1.08002 * 120.84431 * 180.27445 * 25 5 4 42 42 H 1.07997 * 120.35595 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.2048 -0.3619 1.0864 5 6 4.5559 -0.3677 1.1212 6 7 5.1974 -0.7279 2.2160 7 6 4.4450 -1.1204 3.4101 8 6 4.8019 -0.1854 4.5679 9 6 3.9875 -0.5769 5.8049 10 7 4.2130 -2.0009 6.0881 11 6 4.6199 -2.4023 7.3087 12 8 4.8030 -3.5806 7.5297 13 6 4.8472 -1.3869 8.3988 14 16 5.3851 -2.2310 9.9068 15 6 5.5706 -0.8476 10.9822 16 1 5.3630 0.1488 10.6210 17 6 5.9846 -1.0382 12.2932 18 7 6.2382 -2.2526 12.7334 19 14 6.1820 0.4284 13.4331 20 1 4.8999 0.6843 14.1372 21 1 7.2452 0.1414 14.4294 22 1 6.5581 1.6255 12.6388 23 6 3.9871 -2.9789 5.0151 24 6 4.8013 -2.5603 3.7869 25 6 5.2976 0.0282 -0.0833 26 6 4.5953 0.3879 -1.1781 27 7 3.2297 0.3723 -1.1311 28 1 2.7228 0.6305 -1.9168 29 1 3.3766 -1.0521 3.2049 30 1 5.8656 -0.2713 4.7902 31 1 4.5698 0.8427 4.2901 32 1 2.9281 -0.4055 5.6144 33 1 4.3064 0.0205 6.6591 34 1 5.6161 -0.6816 8.0837 35 1 3.9192 -0.8495 8.5941 36 1 6.5271 -2.3860 13.6497 37 1 2.9276 -3.0035 4.7602 38 1 4.3064 -3.9673 5.3457 39 1 4.5686 -3.2227 2.9531 40 1 5.8651 -2.6237 4.0160 41 1 6.3776 0.0310 -0.0926 42 1 5.1070 0.6844 -2.0817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095214999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:19 Heat of formation + Delta-G solvation = 76.148302 kcal Electronic energy + Delta-G solvation = -26319.523954 eV Core-core repulsion = 22427.358645 eV Total energy + Delta-G solvation = -3892.165309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52493 -39.78614 -37.73390 -37.34814 -35.87648 -33.85189 -32.84437 -32.37559 -31.44508 -30.29062 -28.70902 -26.34242 -25.51791 -25.17304 -23.17632 -22.94516 -20.84041 -20.43572 -19.01821 -18.76250 -18.14829 -17.56947 -16.70029 -16.18528 -16.11862 -15.48090 -15.19429 -14.84151 -14.75600 -14.31095 -14.24598 -14.00504 -13.95809 -13.87576 -13.76115 -13.69863 -13.08257 -12.95937 -12.63482 -12.43166 -12.23509 -12.11957 -11.69221 -11.23038 -11.06857 -11.01911 -10.97351 -10.95998 -10.71519 -10.65789 -10.53019 -9.74693 -9.48561 -9.24041 -9.01591 -8.40444 -8.15984 -8.09011 -6.43646 -6.16310 -3.86271 -0.10785 0.78834 1.29843 1.83655 2.14561 2.87247 3.03718 3.16050 3.20281 3.26076 3.30413 3.34534 3.65364 3.69962 3.95185 4.25404 4.40504 4.55362 4.73884 4.84923 5.05071 5.10297 5.10992 5.18546 5.21665 5.32578 5.39655 5.49193 5.66251 5.70992 5.73381 5.78905 5.87982 5.90129 5.96578 6.08145 6.12183 6.13964 6.20245 6.32580 6.38081 6.77541 7.13899 7.64457 7.65035 7.69199 8.40538 8.67490 9.28789 10.91116 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.001882 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.071927 B =14871.751287 C =15028.544749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C 0.252 3.748 3 C 0.496 3.504 4 N -0.512 5.512 5 C 0.334 3.666 6 N -0.505 5.505 7 C 0.072 3.928 8 C -0.118 4.118 9 C 0.112 3.888 10 N -0.619 5.619 11 C 0.536 3.464 12 O -0.519 6.519 13 C -0.150 4.150 14 S -0.062 6.062 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.116 3.884 24 C -0.116 4.116 25 C -0.178 4.178 26 C 0.107 3.893 27 N -0.625 5.625 28 H 0.423 0.577 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.160 0.840 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 8.845 -35.694 37.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.009 5.009 2 C -0.069 4.069 3 C 0.217 3.783 4 N -0.240 5.240 5 C 0.057 3.943 6 N -0.223 5.223 7 C -0.038 4.038 8 C -0.157 4.157 9 C -0.013 4.013 10 N -0.355 5.355 11 C 0.324 3.676 12 O -0.393 6.393 13 C -0.301 4.301 14 S 0.165 5.835 15 C -0.682 4.682 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.007 4.007 24 C -0.155 4.155 25 C -0.208 4.208 26 C -0.017 4.017 27 N -0.248 5.248 28 H 0.260 0.740 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.178 0.822 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.395 6.498 -33.776 34.985 hybrid contribution -0.243 2.744 -0.587 2.817 sum -6.638 9.242 -34.363 36.198 Atomic orbital electron populations 1.81382 1.10747 1.04441 1.04342 1.24370 0.90713 0.96004 0.95767 1.16633 0.85323 0.92061 0.84273 1.69303 1.12123 1.20430 1.22130 1.21162 0.83683 0.95314 0.94133 1.73466 1.33928 1.15842 0.99085 1.21551 0.97791 0.94887 0.89619 1.21881 1.01541 0.98583 0.93697 1.21697 0.99575 0.81765 0.98216 1.48103 1.69067 1.07205 1.11158 1.20310 0.75423 0.89694 0.82206 1.90678 1.49887 1.18159 1.80616 1.23552 1.04670 1.01546 1.00304 1.85391 1.86963 1.11578 0.99553 1.22865 1.52877 0.94008 0.98440 0.90969 1.24992 0.94722 0.96706 0.97223 1.70024 1.42978 1.20380 1.16924 0.86173 0.78019 0.81482 0.79851 1.20306 1.20781 1.19703 1.21485 0.98935 0.94014 0.86266 1.21871 1.01535 0.94846 0.97252 1.22287 1.01774 1.05836 0.90901 1.21882 0.80789 0.98440 1.00540 1.41932 1.07084 1.61741 1.13996 0.73980 0.91082 0.90653 0.91268 0.91601 0.88962 0.89251 0.89319 0.92238 0.92012 0.88650 0.91446 0.90803 0.82212 0.80176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.33 -2.49 18.54 41.84 0.78 -1.72 16 2 C 0.25 1.37 15.62 -22.47 -0.35 1.02 16 3 C 0.50 2.35 7.48 -157.24 -1.18 1.17 16 4 N -0.51 -4.31 8.73 -10.42 -0.09 -4.40 16 5 C 0.33 3.02 7.60 -155.90 -1.18 1.84 16 6 N -0.50 -5.93 10.22 -52.67 -0.54 -6.47 16 7 C 0.07 0.88 2.77 -67.89 -0.19 0.69 16 8 C -0.12 -1.44 5.68 -26.61 -0.15 -1.60 16 9 C 0.11 1.45 6.34 -3.71 -0.02 1.42 16 10 N -0.62 -9.93 2.97 -172.76 -0.51 -10.44 16 11 C 0.54 11.00 7.72 -10.98 -0.08 10.91 16 12 O -0.52 -12.57 15.28 5.56 0.08 -12.49 16 13 C -0.15 -3.23 4.50 36.01 0.16 -3.07 16 14 S -0.06 -1.73 20.57 -107.50 -2.21 -3.95 16 15 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.68 13.22 55.49 0.73 -25.95 16 19 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 C 0.12 1.65 6.43 -3.71 -0.02 1.63 16 24 C -0.12 -1.48 5.68 -26.61 -0.15 -1.64 16 25 C -0.18 -0.83 10.29 -37.25 -0.38 -1.22 16 26 C 0.11 0.07 11.28 -16.57 -0.19 -0.12 16 27 N -0.62 -0.46 5.31 -12.04 -0.06 -0.52 16 28 H 0.42 -1.20 8.73 -40.82 -0.36 -1.55 16 29 H 0.07 0.89 6.70 -51.92 -0.35 0.54 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.19 5.93 -51.93 -0.31 0.88 16 34 H 0.09 1.80 7.69 -51.92 -0.40 1.40 16 35 H 0.09 1.77 7.94 -51.92 -0.41 1.36 16 36 H 0.27 7.64 8.31 -40.82 -0.34 7.31 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.50 7.01 -51.93 -0.36 1.14 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.18 -0.65 8.06 -52.49 -0.42 -1.07 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -39.53 377.20 -9.82 -49.35 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -5.11 Total: -3.73 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.54 Total: -2.20 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.30 Total: -49.50 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.53 -9.82 -49.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095214999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.498 kcal (2) G-P(sol) polarization free energy of solvation -39.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds