Wall clock time and date at job start Wed Apr 1 2020 04:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39406 * 120.06770 * 8.51254 * 3 2 1 5 5 N 1.32135 * 120.05143 * 179.97438 * 4 3 2 6 6 C 1.31971 * 120.18079 * 359.97438 * 5 4 3 7 7 C 1.39573 * 120.12499 * 0.02562 * 6 5 4 8 8 N 1.38979 * 120.02078 * 180.02562 * 7 6 5 9 9 C 1.46843 * 111.00506 * 55.76806 * 8 7 6 10 10 C 1.53035 * 109.52908 * 185.83817 * 9 8 7 11 11 C 1.53116 * 109.27769 * 300.82246 * 10 9 8 12 12 N 1.46501 * 109.52344 * 177.55656 * 11 10 9 13 13 C 1.34776 * 120.00145 * 85.31317 * 12 11 10 14 14 O 1.21287 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00378 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.47495 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00119 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99941 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00175 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99804 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47403 * 59.99996 * 21 19 17 23 23 H 1.48505 * 109.47087 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47357 * 299.99532 * 21 19 17 25 25 C 1.53118 * 109.16341 * 57.65248 * 11 10 9 26 26 C 1.46852 * 110.99754 * 179.97438 * 8 7 6 27 27 N 1.32405 * 119.95526 * 359.97438 * 7 6 5 28 28 H 1.08004 * 119.97533 * 359.95371 * 4 3 2 29 29 H 1.07996 * 119.94041 * 179.97438 * 6 5 4 30 30 H 1.09006 * 109.45867 * 305.85606 * 9 8 7 31 31 H 1.08996 * 109.46457 * 65.81802 * 9 8 7 32 32 H 1.08995 * 109.50669 * 180.87663 * 10 9 8 33 33 H 1.09008 * 109.49662 * 60.76154 * 10 9 8 34 34 H 1.08995 * 109.52098 * 297.74388 * 11 10 9 35 35 H 0.97000 * 120.00011 * 265.31741 * 12 11 10 36 36 H 1.09008 * 109.46961 * 300.00450 * 15 13 12 37 37 H 1.09005 * 109.46952 * 59.99856 * 15 13 12 38 38 H 0.96994 * 120.00147 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.50386 * 182.40917 * 25 11 10 40 40 H 1.08998 * 109.50433 * 62.28476 * 25 11 10 41 41 H 1.08998 * 109.46277 * 294.17160 * 26 8 7 42 42 H 1.08991 * 109.46520 * 54.14374 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -1.1922 -0.1786 5 7 4.5883 -1.1912 -0.1790 6 6 5.2509 -0.0623 -0.0112 7 6 4.5587 1.1363 0.1683 8 7 5.2587 2.3239 0.3444 9 6 6.1886 2.5567 -0.7680 10 6 7.0427 3.7913 -0.4710 11 6 6.1285 5.0051 -0.2829 12 7 6.9365 6.1783 0.0592 13 6 7.4944 6.9205 -0.9177 14 8 7.3271 6.6174 -2.0801 15 6 8.3260 8.1269 -0.5657 16 16 8.9303 8.9068 -2.0832 17 6 9.8439 10.2473 -1.3954 18 1 9.8920 10.3746 -0.3241 19 6 10.5009 11.1402 -2.2306 20 7 10.4419 10.9853 -3.5365 21 14 11.4689 12.5617 -1.5015 22 1 12.5449 12.0308 -0.6265 23 1 12.0724 13.3630 -2.5966 24 1 10.5596 13.4213 -0.7018 25 6 5.1383 4.7180 0.8491 26 6 4.3393 3.4565 0.5136 27 7 3.2346 1.1412 0.1696 28 1 2.7281 -2.1180 -0.3164 29 1 6.3309 -0.0660 -0.0118 30 1 6.8357 1.6878 -0.8882 31 1 5.6236 2.7183 -1.6860 32 1 7.7220 3.9728 -1.3038 33 1 7.6185 3.6248 0.4395 34 1 5.5812 5.1953 -1.2061 35 1 7.0700 6.4208 0.9889 36 1 7.7161 8.8390 -0.0097 37 1 9.1731 7.8181 0.0468 38 1 10.9014 11.6091 -4.1201 39 1 4.4569 5.5616 0.9593 40 1 5.6841 4.5662 1.7803 41 1 3.7830 3.6139 -0.4104 42 1 3.6432 3.2412 1.3242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095405157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:27 Heat of formation + Delta-G solvation = 58.428393 kcal Electronic energy + Delta-G solvation = -26164.144129 eV Core-core repulsion = 22271.210427 eV Total energy + Delta-G solvation = -3892.933702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09262 -40.02911 -38.70626 -37.24269 -35.66389 -34.63838 -32.65385 -32.45069 -31.45710 -30.61487 -28.79616 -26.48252 -25.59135 -25.21521 -23.60889 -23.15797 -20.53686 -20.29858 -19.97746 -18.49283 -17.83476 -17.61077 -17.10972 -16.37501 -16.21461 -16.06851 -15.21265 -15.10556 -14.82706 -14.49778 -14.19539 -14.13763 -13.99223 -13.81059 -13.73641 -13.63376 -13.31744 -13.17816 -12.80596 -12.64962 -12.33514 -12.17311 -11.97171 -11.85251 -11.63802 -11.22412 -11.07182 -11.05696 -10.92728 -10.77230 -10.57177 -9.93792 -9.84979 -9.44911 -9.08997 -8.97345 -8.89568 -8.27552 -6.53101 -6.24075 -3.95001 -0.31745 0.35761 1.80835 2.19069 2.64408 2.88830 2.96912 3.02196 3.16816 3.21706 3.25669 3.28531 3.58092 3.64024 3.73789 3.97898 4.18183 4.28462 4.40012 4.47419 4.61868 4.66421 4.74168 4.89436 5.01806 5.07080 5.11147 5.19610 5.24892 5.33473 5.39881 5.48670 5.61794 5.64753 5.80172 5.84820 6.00808 6.05324 6.10490 6.29075 6.53852 6.57571 6.77551 6.99853 7.56807 7.64725 8.32480 8.54922 9.21238 10.83261 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.032773 B = 0.001654 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.155685 B =16926.780918 C =17164.652705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C 0.266 3.734 3 C 0.174 3.826 4 C 0.067 3.933 5 N -0.410 5.410 6 C 0.073 3.927 7 C 0.282 3.718 8 N -0.466 5.466 9 C 0.059 3.941 10 C -0.129 4.129 11 C 0.143 3.857 12 N -0.734 5.734 13 C 0.534 3.466 14 O -0.517 6.517 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.127 4.127 26 C 0.067 3.933 27 N -0.450 5.450 28 H 0.180 0.820 29 H 0.183 0.817 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.435 -23.429 11.136 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.050 5.050 2 C -0.053 4.053 3 C 0.033 3.967 4 C -0.094 4.094 5 N -0.123 5.123 6 C -0.094 4.094 7 C 0.044 3.956 8 N -0.183 5.183 9 C -0.066 4.066 10 C -0.168 4.168 11 C 0.038 3.962 12 N -0.388 5.388 13 C 0.320 3.680 14 O -0.391 6.391 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.165 4.165 26 C -0.060 4.060 27 N -0.172 5.172 28 H 0.197 0.803 29 H 0.200 0.800 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.100 -23.828 9.414 28.775 hybrid contribution 0.902 1.585 1.808 2.569 sum -12.198 -22.242 11.222 27.739 Atomic orbital electron populations 1.81306 1.11255 1.06090 1.06376 1.24719 0.91303 0.94437 0.94811 1.17141 0.87044 0.91100 1.01432 1.23579 0.90637 0.97939 0.97241 1.68552 1.07736 1.27941 1.08046 1.23723 1.02342 0.86794 0.96543 1.20864 0.87907 0.93512 0.93337 1.59162 1.17800 1.01041 1.40324 1.22383 0.94138 1.00192 0.89908 1.22061 0.98304 0.92506 1.03968 1.20932 0.91434 0.85012 0.98824 1.46038 1.53987 1.28927 1.09811 1.20334 0.78946 0.83414 0.85323 1.90701 1.59141 1.70258 1.19028 1.23540 1.01560 0.97734 1.07665 1.85383 1.64115 1.31433 1.02402 1.22827 1.36792 1.13632 0.95254 0.90968 1.24989 0.96073 0.97791 0.94682 1.70003 1.41188 1.36666 1.02423 0.86226 0.79742 0.80936 0.78611 1.19930 1.20803 1.19942 1.21952 0.98400 0.97097 0.99099 1.22043 0.93325 0.87734 1.02946 1.68274 1.08219 1.27897 1.12788 0.80275 0.80010 0.89000 0.92469 0.89399 0.90241 0.89411 0.76703 0.89236 0.89184 0.92110 0.89880 0.90173 0.92329 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -3.74 18.54 41.84 0.78 -2.96 16 2 C 0.27 2.11 15.56 -22.47 -0.35 1.76 16 3 C 0.17 1.19 6.58 -84.92 -0.56 0.63 16 4 C 0.07 0.35 10.92 -16.99 -0.19 0.17 16 5 N -0.41 -2.57 10.48 -12.53 -0.13 -2.70 16 6 C 0.07 0.42 10.34 -16.99 -0.18 0.24 16 7 C 0.28 1.95 6.40 -154.87 -0.99 0.96 16 8 N -0.47 -3.13 4.68 -173.10 -0.81 -3.94 16 9 C 0.06 0.39 5.25 -3.84 -0.02 0.37 16 10 C -0.13 -1.10 5.67 -26.65 -0.15 -1.25 16 11 C 0.14 1.39 2.52 -67.81 -0.17 1.22 16 12 N -0.73 -8.48 5.08 -53.69 -0.27 -8.75 16 13 C 0.53 9.12 7.82 -10.99 -0.09 9.04 16 14 O -0.52 -10.90 15.53 5.55 0.09 -10.81 16 15 C -0.15 -2.95 6.16 36.00 0.22 -2.72 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 18 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 21 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 C -0.13 -0.89 5.57 -26.65 -0.15 -1.04 16 26 C 0.07 0.48 4.66 -3.83 -0.02 0.46 16 27 N -0.45 -3.58 8.79 -10.15 -0.09 -3.67 16 28 H 0.18 0.41 8.06 -52.48 -0.42 -0.01 16 29 H 0.18 0.60 7.14 -52.49 -0.38 0.22 16 30 H 0.09 0.41 6.69 -51.93 -0.35 0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 35 H 0.40 3.51 8.61 -40.82 -0.35 3.16 16 36 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 37 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.09 0.68 7.72 -51.93 -0.40 0.28 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -35.08 377.20 -8.91 -43.99 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.22 Total: -1.15 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.44 Total: -2.88 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.21 Total: -47.08 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.08 -8.91 -43.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095405157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.418 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds