Wall clock time and date at job start Wed Apr 1 2020 04:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39406 * 120.06770 * 8.51254 * 3 2 1 5 5 N 1.32135 * 120.05143 * 179.97438 * 4 3 2 6 6 C 1.31971 * 120.18079 * 359.97438 * 5 4 3 7 7 C 1.39573 * 120.12499 * 0.02562 * 6 5 4 8 8 N 1.38979 * 120.02078 * 180.02562 * 7 6 5 9 9 C 1.46843 * 111.00506 * 55.76806 * 8 7 6 10 10 C 1.53035 * 109.52908 * 185.83817 * 9 8 7 11 11 C 1.53116 * 109.27769 * 300.82246 * 10 9 8 12 12 N 1.46501 * 109.52344 * 177.55656 * 11 10 9 13 13 C 1.34776 * 120.00145 * 85.31317 * 12 11 10 14 14 O 1.21287 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00378 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.47495 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00119 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99941 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00175 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99804 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47403 * 59.99996 * 21 19 17 23 23 H 1.48505 * 109.47087 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47357 * 299.99532 * 21 19 17 25 25 C 1.53118 * 109.16341 * 57.65248 * 11 10 9 26 26 C 1.46852 * 110.99754 * 179.97438 * 8 7 6 27 27 N 1.32405 * 119.95526 * 359.97438 * 7 6 5 28 28 H 1.08004 * 119.97533 * 359.95371 * 4 3 2 29 29 H 1.07996 * 119.94041 * 179.97438 * 6 5 4 30 30 H 1.09006 * 109.45867 * 305.85606 * 9 8 7 31 31 H 1.08996 * 109.46457 * 65.81802 * 9 8 7 32 32 H 1.08995 * 109.50669 * 180.87663 * 10 9 8 33 33 H 1.09008 * 109.49662 * 60.76154 * 10 9 8 34 34 H 1.08995 * 109.52098 * 297.74388 * 11 10 9 35 35 H 0.97000 * 120.00011 * 265.31741 * 12 11 10 36 36 H 1.09008 * 109.46961 * 300.00450 * 15 13 12 37 37 H 1.09005 * 109.46952 * 59.99856 * 15 13 12 38 38 H 0.96994 * 120.00147 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.50386 * 182.40917 * 25 11 10 40 40 H 1.08998 * 109.50433 * 62.28476 * 25 11 10 41 41 H 1.08998 * 109.46277 * 294.17160 * 26 8 7 42 42 H 1.08991 * 109.46520 * 54.14374 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -1.1922 -0.1786 5 7 4.5883 -1.1912 -0.1790 6 6 5.2509 -0.0623 -0.0112 7 6 4.5587 1.1363 0.1683 8 7 5.2587 2.3239 0.3444 9 6 6.1886 2.5567 -0.7680 10 6 7.0427 3.7913 -0.4710 11 6 6.1285 5.0051 -0.2829 12 7 6.9365 6.1783 0.0592 13 6 7.4944 6.9205 -0.9177 14 8 7.3271 6.6174 -2.0801 15 6 8.3260 8.1269 -0.5657 16 16 8.9303 8.9068 -2.0832 17 6 9.8439 10.2473 -1.3954 18 1 9.8920 10.3746 -0.3241 19 6 10.5009 11.1402 -2.2306 20 7 10.4419 10.9853 -3.5365 21 14 11.4689 12.5617 -1.5015 22 1 12.5449 12.0308 -0.6265 23 1 12.0724 13.3630 -2.5966 24 1 10.5596 13.4213 -0.7018 25 6 5.1383 4.7180 0.8491 26 6 4.3393 3.4565 0.5136 27 7 3.2346 1.1412 0.1696 28 1 2.7281 -2.1180 -0.3164 29 1 6.3309 -0.0660 -0.0118 30 1 6.8357 1.6878 -0.8882 31 1 5.6236 2.7183 -1.6860 32 1 7.7220 3.9728 -1.3038 33 1 7.6185 3.6248 0.4395 34 1 5.5812 5.1953 -1.2061 35 1 7.0700 6.4208 0.9889 36 1 7.7161 8.8390 -0.0097 37 1 9.1731 7.8181 0.0468 38 1 10.9014 11.6091 -4.1201 39 1 4.4569 5.5616 0.9593 40 1 5.6841 4.5662 1.7803 41 1 3.7830 3.6139 -0.4104 42 1 3.6432 3.2412 1.3242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095405157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:26 Heat of formation + Delta-G solvation = 32.890859 kcal Electronic energy + Delta-G solvation = -26165.251520 eV Core-core repulsion = 22271.210427 eV Total energy + Delta-G solvation = -3894.041092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.59569 -40.98693 -39.65812 -37.91294 -36.51024 -35.26301 -34.56861 -33.54047 -32.06307 -31.47969 -29.98961 -27.65734 -27.00796 -25.92966 -24.21533 -23.82724 -21.63019 -21.19666 -20.53781 -19.78871 -18.97920 -18.07432 -17.77967 -17.66180 -17.16753 -16.86170 -16.70544 -16.34441 -15.90790 -15.76312 -15.19196 -14.88013 -14.77501 -14.69059 -14.46388 -14.42667 -14.32699 -14.26825 -13.84995 -13.57571 -13.32259 -13.15268 -12.97275 -12.85740 -12.68221 -12.58720 -12.44646 -12.23385 -11.99017 -11.76048 -11.60670 -11.12468 -11.11447 -10.86137 -10.43329 -10.25494 -10.05360 -9.41181 -8.64347 -8.33150 -6.10772 -0.79981 -0.12967 1.20246 1.28915 1.44853 1.48510 1.58128 1.62602 1.65328 2.10300 2.26528 2.31034 2.35859 2.66426 3.01001 3.16352 3.27553 3.33787 3.47819 3.63640 3.81385 3.91020 3.97637 4.06481 4.13616 4.26418 4.29845 4.34785 4.42767 4.53504 4.56543 4.62333 4.78414 4.82167 4.90887 5.05659 5.14804 5.24317 5.43210 5.46263 5.54429 5.75467 6.01345 6.21029 6.21728 6.52627 6.56311 7.08316 7.29744 8.75638 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.032773 B = 0.001654 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.155685 B =16926.780918 C =17164.652705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.289 3.711 3 C 0.159 3.841 4 C 0.085 3.915 5 N -0.424 5.424 6 C 0.087 3.913 7 C 0.270 3.730 8 N -0.460 5.460 9 C 0.064 3.936 10 C -0.123 4.123 11 C 0.140 3.860 12 N -0.707 5.707 13 C 0.536 3.464 14 O -0.564 6.564 15 C -0.131 4.131 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.263 1.263 25 C -0.114 4.114 26 C 0.070 3.930 27 N -0.469 5.469 28 H 0.209 0.791 29 H 0.208 0.792 30 H 0.118 0.882 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.417 0.583 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 -24.483 13.804 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.029 4.029 3 C 0.018 3.982 4 C -0.075 4.075 5 N -0.136 5.136 6 C -0.080 4.080 7 C 0.032 3.968 8 N -0.178 5.178 9 C -0.062 4.062 10 C -0.162 4.162 11 C 0.035 3.965 12 N -0.360 5.360 13 C 0.322 3.678 14 O -0.443 6.443 15 C -0.282 4.282 16 S 0.076 5.924 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.152 4.152 26 C -0.057 4.057 27 N -0.191 5.191 28 H 0.225 0.775 29 H 0.225 0.775 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.254 0.746 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.062 0.938 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.409 -24.922 12.143 30.373 hybrid contribution 0.626 1.780 1.029 2.149 sum -11.783 -23.142 13.172 29.118 Atomic orbital electron populations 1.81323 1.12409 1.07423 1.08113 1.24843 0.91391 0.93194 0.93474 1.17143 0.86337 0.91576 1.03132 1.24006 0.90443 0.98297 0.94785 1.68679 1.08034 1.28083 1.08818 1.24130 1.03455 0.86026 0.94398 1.20961 0.87642 0.93916 0.94318 1.59206 1.17578 1.00830 1.40194 1.22354 0.94127 1.00296 0.89415 1.21949 0.97965 0.92603 1.03654 1.21094 0.91841 0.84578 0.98943 1.45775 1.52280 1.28329 1.09658 1.20019 0.79003 0.83331 0.85429 1.90693 1.61053 1.71399 1.21108 1.23388 1.02722 0.98457 1.03641 1.85558 1.65110 1.32880 1.08876 1.23184 1.36726 1.13790 0.95802 0.89897 1.26109 0.97127 1.00866 0.95001 1.70174 1.42444 1.38006 1.04134 0.85026 0.78267 0.76973 0.77873 1.18598 1.20512 1.18745 1.21865 0.97732 0.97224 0.98401 1.21961 0.93395 0.88008 1.02324 1.68153 1.09039 1.28797 1.13081 0.77472 0.77510 0.86352 0.93692 0.91909 0.88661 0.92149 0.74554 0.87395 0.87109 0.92039 0.89471 0.88321 0.93754 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.32 18.54 19.00 0.35 -7.97 16 2 C 0.29 4.45 15.56 88.33 1.37 5.83 16 3 C 0.16 1.96 6.58 40.46 0.27 2.23 16 4 C 0.09 0.70 10.92 84.93 0.93 1.63 16 5 N -0.42 -4.18 10.48 -193.55 -2.03 -6.21 16 6 C 0.09 0.74 10.34 84.99 0.88 1.62 16 7 C 0.27 3.21 6.40 133.18 0.85 4.06 16 8 N -0.46 -5.27 4.68 -701.55 -3.29 -8.55 16 9 C 0.06 0.73 5.25 86.33 0.45 1.18 16 10 C -0.12 -1.92 5.67 30.64 0.17 -1.74 16 11 C 0.14 2.59 2.52 45.07 0.11 2.71 16 12 N -0.71 -15.23 5.08 -442.16 -2.25 -17.48 16 13 C 0.54 18.20 7.82 87.66 0.69 18.88 16 14 O -0.56 -24.56 15.53 -3.05 -0.05 -24.61 16 15 C -0.13 -4.90 6.16 71.23 0.44 -4.46 16 16 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 17 C -0.55 -30.68 9.50 67.95 0.65 -30.03 16 18 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -55.38 13.22 21.65 0.29 -55.09 16 21 Si 1.00 42.90 29.55 68.60 2.03 44.92 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 C -0.11 -1.37 5.57 30.65 0.17 -1.20 16 26 C 0.07 0.92 4.66 86.33 0.40 1.32 16 27 N -0.47 -6.90 8.79 -186.04 -1.63 -8.54 16 28 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 29 H 0.21 0.59 7.14 -2.91 -0.02 0.56 16 30 H 0.12 0.73 6.69 -2.38 -0.02 0.72 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16 35 H 0.42 6.10 8.61 -92.71 -0.80 5.30 16 36 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 37 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.04 0.71 8.12 -2.39 -0.02 0.69 16 42 H 0.09 1.25 7.72 -2.39 -0.02 1.23 16 Total: -1.00 -79.63 377.20 0.39 -79.25 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.28 Total: 10.38 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 7.85 Total: 3.26 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -8.56 Total: -103.84 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.05 Total: -24.61 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -79.63 0.39 -79.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095405157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.137 kcal (2) G-P(sol) polarization free energy of solvation -79.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds