Wall clock time and date at job start Wed Apr 1 2020 04:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 N 1.33031 * 120.17195 * 26.71927 * 3 2 1 5 5 C 1.31841 * 119.98871 * 179.97438 * 4 3 2 6 6 C 1.38645 * 120.34972 * 0.02562 * 5 4 3 7 7 N 1.32113 * 120.35567 * 359.97431 * 6 5 4 8 8 C 1.32732 * 119.99701 * 0.02562 * 7 6 5 9 9 N 1.38410 * 120.17364 * 180.02562 * 8 7 6 10 10 C 1.46503 * 119.99756 * 359.97438 * 9 8 7 11 11 H 1.09003 * 109.47157 * 35.00053 * 10 9 8 12 12 C 1.52996 * 109.46894 * 155.00006 * 10 9 8 13 13 N 1.46504 * 109.47384 * 304.99573 * 12 10 9 14 14 C 1.34775 * 120.00190 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00033 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99955 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47176 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00251 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99774 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00027 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00344 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99818 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46912 * 60.00498 * 22 20 18 24 24 H 1.48499 * 109.46892 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47233 * 300.00487 * 22 20 18 26 26 C 1.53003 * 109.46998 * 274.99794 * 10 9 8 27 27 C 1.53002 * 117.49798 * 128.62489 * 26 10 9 28 28 C 1.52996 * 117.49930 * 60.00387 * 26 10 9 29 29 H 1.08003 * 119.82859 * 180.02562 * 5 4 3 30 30 H 1.08008 * 119.82556 * 179.70595 * 6 5 4 31 31 H 0.96998 * 120.00397 * 179.97438 * 9 8 7 32 32 H 1.09003 * 109.47516 * 65.00305 * 12 10 9 33 33 H 1.09003 * 109.47118 * 184.99638 * 12 10 9 34 34 H 0.96993 * 119.99567 * 0.02562 * 13 12 10 35 35 H 1.08992 * 109.47048 * 300.00410 * 16 14 13 36 36 H 1.09004 * 109.46553 * 60.00341 * 16 14 13 37 37 H 0.96998 * 120.00063 * 179.97438 * 21 20 18 38 38 H 1.09000 * 115.54887 * 274.33185 * 26 10 9 39 39 H 1.09005 * 117.49639 * 359.97438 * 27 26 10 40 40 H 1.08992 * 117.50300 * 145.01843 * 27 26 10 41 41 H 1.08995 * 117.50322 * 214.98094 * 28 26 10 42 42 H 1.09005 * 117.49743 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2371 -1.0263 -0.5171 5 6 4.5555 -1.0217 -0.5157 6 6 5.2517 0.0493 0.0233 7 7 4.6012 1.0763 0.5404 8 6 3.2739 1.0862 0.5463 9 7 2.5886 2.1605 1.0866 10 6 3.3283 3.2904 1.6545 11 1 4.2383 3.4557 1.0777 12 6 2.4572 4.5471 1.6043 13 7 2.0080 4.7753 0.2286 14 6 1.2226 5.8327 -0.0572 15 8 0.8881 6.5955 0.8244 16 6 0.7601 6.0670 -1.4722 17 16 -0.2703 7.5539 -1.5317 18 6 -0.6608 7.5871 -3.2495 19 1 -0.2759 6.8205 -3.9057 20 6 -1.4629 8.5986 -3.7594 21 7 -1.9315 9.5333 -2.9598 22 14 -1.8762 8.6342 -5.5808 23 1 -2.5931 7.3873 -5.9502 24 1 -2.7416 9.8060 -5.8692 25 1 -0.6231 8.7372 -6.3709 26 6 3.6946 2.9814 3.1076 27 6 5.1574 3.1574 3.5201 28 6 4.5684 1.7533 3.3701 29 1 5.0961 -1.8567 -0.9365 30 1 6.3318 0.0420 0.0243 31 1 1.6186 2.1653 1.0893 32 1 1.5907 4.4148 2.2523 33 1 3.0373 5.4051 1.9441 34 1 2.2752 4.1651 -0.4763 35 1 1.6263 6.1996 -2.1203 36 1 0.1802 5.2088 -1.8117 37 1 -2.4918 10.2403 -3.3163 38 1 2.9304 3.2227 3.8465 39 1 5.8589 3.4928 2.7562 40 1 5.3559 3.5146 4.5305 41 1 4.3794 1.1867 4.2818 42 1 4.8820 1.1651 2.5076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096584927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:22 Heat of formation + Delta-G solvation = 56.995743 kcal Electronic energy + Delta-G solvation = -26718.474021 eV Core-core repulsion = 22825.478194 eV Total energy + Delta-G solvation = -3892.995826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.29370 -40.79440 -39.34009 -37.87536 -36.52239 -35.73739 -34.75979 -34.61084 -32.42514 -30.97711 -29.11937 -27.68364 -26.74927 -24.90731 -24.07470 -23.10637 -22.05392 -21.35783 -20.57809 -19.95076 -19.24360 -18.70460 -17.85793 -17.38318 -16.90460 -16.84063 -16.73655 -16.35129 -16.09929 -15.89704 -15.59833 -15.16851 -14.97848 -14.71120 -14.47224 -14.29689 -14.23402 -14.14853 -13.80506 -13.38839 -13.25302 -13.20174 -12.92005 -12.88044 -12.79977 -12.64481 -12.31496 -12.04060 -11.78181 -11.36522 -11.23315 -11.15778 -11.06027 -10.93561 -10.32478 -10.27420 -10.16407 -9.04451 -8.69712 -8.37373 -6.15643 -0.53065 0.23589 1.22809 1.34220 1.41426 1.43166 1.52833 1.54053 1.69771 1.77296 2.18253 2.25059 2.46260 2.84054 2.96000 2.96675 3.17999 3.27805 3.48718 3.50856 3.80234 3.86233 3.96186 4.04982 4.17470 4.19583 4.23628 4.28256 4.45078 4.46225 4.52478 4.64029 4.80930 4.91603 5.09173 5.22264 5.27732 5.33359 5.38593 5.42777 5.75008 5.80057 6.16635 6.18753 6.36014 6.47531 6.79137 7.03849 7.14254 8.71598 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.002456 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.613006 B =11398.613427 C =12759.371678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.282 3.718 3 C 0.034 3.966 4 N -0.393 5.393 5 C 0.001 3.999 6 C 0.158 3.842 7 N -0.495 5.495 8 C 0.412 3.588 9 N -0.697 5.697 10 C 0.189 3.811 11 H 0.114 0.886 12 C 0.115 3.885 13 N -0.714 5.714 14 C 0.536 3.464 15 O -0.559 6.559 16 C -0.132 4.132 17 S -0.145 6.145 18 C -0.550 4.550 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.997 3.003 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.260 1.260 26 C -0.182 4.182 27 C -0.153 4.153 28 C -0.176 4.176 29 H 0.214 0.786 30 H 0.227 0.773 31 H 0.410 0.590 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.411 0.589 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.272 0.728 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.574 -23.772 9.009 34.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.034 4.034 3 C -0.110 4.110 4 N -0.108 5.108 5 C -0.167 4.167 6 C -0.008 4.008 7 N -0.218 5.218 8 C 0.171 3.829 9 N -0.326 5.326 10 C 0.085 3.915 11 H 0.131 0.869 12 C -0.009 4.009 13 N -0.368 5.368 14 C 0.322 3.678 15 O -0.437 6.437 16 C -0.283 4.283 17 S 0.082 5.918 18 C -0.697 4.697 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.819 3.181 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.202 4.202 27 C -0.191 4.191 28 C -0.213 4.213 29 H 0.230 0.770 30 H 0.243 0.757 31 H 0.247 0.753 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.248 0.752 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.189 -22.129 10.616 32.425 hybrid contribution -0.431 -0.817 -2.055 2.253 sum 20.758 -22.946 8.561 32.104 Atomic orbital electron populations 1.81355 1.12669 1.07806 1.09784 1.25194 0.91950 0.93326 0.92951 1.16334 0.85876 0.96068 1.12753 1.68099 1.11641 1.22105 1.08963 1.24187 0.88113 1.02222 1.02156 1.24748 1.03889 0.86322 0.85842 1.68299 1.04188 1.28540 1.20750 1.18881 0.89999 0.86069 0.87918 1.44847 1.08820 1.17530 1.61384 1.20763 0.95088 0.82217 0.93479 0.86858 1.21708 0.98732 0.97728 0.82721 1.45693 1.51738 1.28024 1.11339 1.19977 0.77741 0.80601 0.89465 1.90705 1.56943 1.46825 1.49185 1.23378 1.04188 1.03615 0.97153 1.85518 1.62921 1.30465 1.12923 1.23167 1.37385 1.15572 0.93605 0.90097 1.26113 0.94543 0.93929 1.04450 1.70166 1.33061 1.13617 1.37805 0.85025 0.78700 0.78168 0.76249 1.18923 1.20226 1.18480 1.22534 0.95783 1.06040 0.95830 1.22995 0.93679 0.99244 1.03177 1.23239 1.02943 0.91314 1.03783 0.76973 0.75693 0.75294 0.91563 0.89309 0.75220 0.87182 0.87880 0.91919 0.87864 0.87561 0.88245 0.89571 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.12 18.54 19.01 0.35 -11.77 16 2 C 0.28 6.34 14.32 88.33 1.27 7.60 16 3 C 0.03 0.57 6.61 40.77 0.27 0.84 16 4 N -0.39 -5.67 10.42 -187.89 -1.96 -7.63 16 5 C 0.00 0.01 11.21 84.79 0.95 0.96 16 6 C 0.16 0.41 11.22 84.75 0.95 1.36 16 7 N -0.49 -4.33 6.58 -191.79 -1.26 -5.59 16 8 C 0.41 5.46 6.80 133.51 0.91 6.37 16 9 N -0.70 -9.66 4.55 -323.57 -1.47 -11.14 16 10 C 0.19 2.43 2.43 44.99 0.11 2.54 16 11 H 0.11 1.33 7.30 -2.39 -0.02 1.32 16 12 C 0.12 2.19 5.21 86.38 0.45 2.64 16 13 N -0.71 -16.79 5.39 -463.05 -2.49 -19.28 16 14 C 0.54 19.27 7.85 87.66 0.69 19.96 16 15 O -0.56 -25.15 15.86 -3.04 -0.05 -25.20 16 16 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 17 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 18 C -0.55 -31.74 9.50 67.95 0.65 -31.09 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.84 5.49 84.86 0.47 1.31 16 21 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 22 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 C -0.18 -2.17 5.36 -10.79 -0.06 -2.22 16 27 C -0.15 -1.46 10.18 30.59 0.31 -1.15 16 28 C -0.18 -1.86 9.74 30.59 0.30 -1.56 16 29 H 0.21 -0.55 8.06 -2.91 -0.02 -0.57 16 30 H 0.23 -1.52 8.06 -2.91 -0.02 -1.54 16 31 H 0.41 6.69 7.45 -92.71 -0.69 6.00 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 7.69 8.14 -92.71 -0.75 6.93 16 35 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 36 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 37 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 38 H 0.10 1.36 8.11 -2.39 -0.02 1.34 16 39 H 0.11 0.88 8.05 -2.38 -0.02 0.86 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.12 1.17 4.75 -2.38 -0.01 1.16 16 Total: -1.00 -83.24 382.97 1.61 -81.62 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.35 Total: 15.46 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 7.69 Total: 2.72 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -6.55 Total: -111.43 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -83.24 1.61 -81.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096584927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.619 kcal (2) G-P(sol) polarization free energy of solvation -83.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds