Wall clock time and date at job start Wed Apr 1 2020 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46888 * 2 1 4 4 C 1.53003 * 109.47014 * 119.99246 * 2 1 3 5 5 N 1.46499 * 109.46708 * 174.99880 * 4 2 1 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 S 1.81008 * 109.46759 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99946 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00252 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00327 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99735 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47351 * 90.00094 * 14 12 10 16 16 H 1.48496 * 109.47299 * 210.00069 * 14 12 10 17 17 H 1.48507 * 109.47281 * 330.00181 * 14 12 10 18 18 N 1.46491 * 109.46969 * 239.99850 * 2 1 3 19 19 C 1.32330 * 120.00406 * 120.00236 * 18 2 1 20 20 C 1.46366 * 119.15169 * 179.97438 * 19 18 2 21 21 C 1.35461 * 119.68713 * 179.97438 * 20 19 18 22 22 C 1.46274 * 117.83571 * 359.97438 * 21 20 19 23 23 N 1.32450 * 121.59018 * 180.02562 * 22 21 20 24 24 C 1.32174 * 120.32862 * 180.02562 * 23 22 21 25 25 C 1.37473 * 121.88258 * 359.91214 * 24 23 22 26 26 N 1.34820 * 121.12374 * 0.06846 * 25 24 23 27 27 H 0.97011 * 120.61905 * 180.02562 * 26 25 24 28 28 C 1.36924 * 118.75652 * 359.97438 * 26 25 24 29 29 N 1.31880 * 121.44588 * 180.27736 * 28 26 25 30 30 H 1.08997 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47112 * 300.00076 * 1 2 3 32 32 H 1.08995 * 109.47237 * 60.00392 * 1 2 3 33 33 H 1.08998 * 109.46692 * 55.00382 * 4 2 1 34 34 H 1.08994 * 109.47584 * 295.00246 * 4 2 1 35 35 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 37 37 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 38 38 H 0.97000 * 120.00223 * 180.02562 * 13 12 10 39 39 H 1.08000 * 120.15652 * 359.97438 * 20 19 18 40 40 H 1.07995 * 121.07747 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.05971 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.42943 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5000 -0.8262 1.1906 6 6 4.1731 -1.4289 2.1909 7 8 3.5698 -1.8846 3.1392 8 6 5.6744 -1.5425 2.1275 9 16 6.2778 -2.3955 3.6055 10 6 8.0088 -2.3900 3.2768 11 1 8.3847 -1.9405 2.3695 12 6 8.8894 -2.9632 4.1837 13 7 10.1825 -2.9586 3.9383 14 14 8.2391 -3.7412 5.7525 15 1 7.9461 -5.1764 5.5087 16 1 9.2590 -3.6195 6.8250 17 1 6.9953 -3.0462 6.1711 18 7 2.0183 -0.6906 -1.1961 19 6 2.7791 -0.0476 -2.0672 20 6 3.2571 -0.7559 -3.2556 21 6 4.0361 -0.1080 -4.1547 22 6 4.3663 1.2920 -3.8888 23 7 5.1217 1.9962 -4.7181 24 6 5.4050 3.2597 -4.4530 25 6 4.9340 3.8882 -3.3247 26 7 4.1593 3.2352 -2.4353 27 1 3.8306 3.6859 -1.6416 28 6 3.8441 1.9242 -2.6738 29 7 3.0859 1.2366 -1.8423 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6054 -1.7196 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.9824 -0.4621 0.4319 36 1 5.9588 -2.1083 1.2403 37 1 6.1125 -0.5456 2.0785 38 1 10.7979 -3.3595 4.5720 39 1 2.9900 -1.7901 -3.4149 40 1 4.4008 -0.6086 -5.0393 41 1 6.0232 3.8146 -5.1431 42 1 5.1897 4.9224 -3.1474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097676504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:39 Heat of formation + Delta-G solvation = 42.241484 kcal Electronic energy + Delta-G solvation = -26646.995524 eV Core-core repulsion = 22753.359905 eV Total energy + Delta-G solvation = -3893.635619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.37355 -40.76811 -39.34390 -37.22708 -36.81091 -34.74753 -34.67214 -32.88375 -32.65680 -31.03384 -29.85154 -27.92835 -26.84243 -26.21155 -25.22205 -24.10525 -21.84314 -21.46048 -20.23597 -19.95770 -19.67687 -19.09973 -17.92807 -17.51559 -17.33567 -17.09691 -16.59544 -16.56061 -16.36472 -15.77408 -15.65855 -15.21955 -15.10259 -14.89556 -14.61076 -14.41625 -14.22078 -13.74205 -13.53049 -13.39906 -13.38083 -13.32288 -13.12463 -13.03077 -12.94012 -12.65483 -12.16725 -11.88623 -11.82530 -11.19970 -11.11073 -10.80742 -10.59842 -10.59367 -10.52975 -10.22278 -9.84599 -9.04753 -8.54548 -8.11878 -6.26375 -1.09198 -0.16127 0.87484 0.92872 1.27285 1.29969 1.44055 1.48072 1.52675 1.94630 2.18351 2.24297 2.67535 2.81358 2.83438 2.95233 3.12660 3.22244 3.48223 3.75501 3.89328 3.98127 4.06156 4.09465 4.19341 4.22413 4.33518 4.42684 4.50432 4.60977 4.75360 4.77735 4.85170 4.92482 5.07977 5.11540 5.21899 5.25404 5.39587 5.52661 5.67631 5.70720 6.07298 6.34352 6.62649 6.90118 6.94802 7.07953 7.13231 8.58072 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.002654 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.370245 B =10546.991124 C =12257.713348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.071 3.929 3 H 0.072 0.928 4 C 0.137 3.863 5 N -0.706 5.706 6 C 0.533 3.467 7 O -0.561 6.561 8 C -0.109 4.109 9 S -0.167 6.167 10 C -0.532 4.532 11 H 0.060 0.940 12 C 0.048 3.952 13 N -0.915 5.915 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.255 1.255 17 H -0.238 1.238 18 N -0.572 5.572 19 C 0.364 3.636 20 C -0.130 4.130 21 C -0.050 4.050 22 C 0.027 3.973 23 N -0.382 5.382 24 C -0.049 4.049 25 C 0.162 3.838 26 N -0.513 5.513 27 H 0.447 0.553 28 C 0.380 3.620 29 N -0.640 5.640 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.403 0.597 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.278 0.722 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.216 0.784 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 21.694 -22.663 34.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.041 4.041 3 H 0.090 0.910 4 C 0.013 3.987 5 N -0.358 5.358 6 C 0.318 3.682 7 O -0.440 6.440 8 C -0.260 4.260 9 S 0.060 5.940 10 C -0.680 4.680 11 H 0.078 0.922 12 C -0.158 4.158 13 N -0.553 5.553 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.179 1.179 17 H -0.162 1.162 18 N -0.297 5.297 19 C 0.088 3.912 20 C -0.155 4.155 21 C -0.074 4.074 22 C -0.131 4.131 23 N -0.094 5.094 24 C -0.202 4.202 25 C 0.022 3.978 26 N -0.121 5.121 27 H 0.290 0.710 28 C 0.117 3.883 29 N -0.373 5.373 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.238 0.762 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.170 0.830 40 H 0.190 0.810 41 H 0.232 0.768 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -15.493 19.933 -20.734 32.669 hybrid contribution 1.240 1.001 -0.361 1.634 sum -14.253 20.934 -21.095 32.960 Atomic orbital electron populations 1.21613 0.92433 1.02204 1.02020 1.21546 0.96357 0.97264 0.88960 0.91023 1.21461 0.78739 1.00602 0.97912 1.45702 1.08207 1.59178 1.22677 1.19986 0.88718 0.77247 0.82253 1.90667 1.70291 1.48537 1.34508 1.23218 0.94730 1.05360 1.02654 1.84665 1.04693 1.76899 1.27750 1.22439 0.90735 1.44504 1.10283 0.92168 1.25546 0.94323 0.94876 1.01015 1.70006 1.02690 1.44409 1.38193 0.85873 0.80460 0.80366 0.79711 1.18669 1.17873 1.16156 1.73774 1.17229 1.33086 1.05605 1.21060 0.91606 0.85499 0.93047 1.22701 0.98558 1.01551 0.92705 1.22063 0.95885 0.89617 0.99820 1.21757 1.02282 0.96824 0.92194 1.67839 1.05391 1.08245 1.27881 1.23229 1.06716 0.90816 0.99470 1.24635 0.84840 1.01294 0.87026 1.41756 1.38875 1.08108 1.23407 0.70999 1.20808 0.90505 0.86152 0.90858 1.67917 1.25854 1.10034 1.33521 0.92638 0.90727 0.92702 0.92865 0.91262 0.76191 0.87716 0.87256 0.91223 0.83036 0.80967 0.76752 0.73263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.52 71.98 0.69 -2.05 16 2 C 0.07 1.84 3.07 44.99 0.14 1.98 16 3 H 0.07 1.85 6.63 -2.39 -0.02 1.84 16 4 C 0.14 4.18 5.37 86.38 0.46 4.65 16 5 N -0.71 -23.62 5.39 -463.06 -2.49 -26.11 16 6 C 0.53 21.97 7.85 87.65 0.69 22.66 16 7 O -0.56 -27.21 15.86 -3.04 -0.05 -27.26 16 8 C -0.11 -4.68 6.16 71.24 0.44 -4.24 16 9 S -0.17 -8.97 18.55 -56.49 -1.05 -10.02 16 10 C -0.53 -32.22 10.04 67.95 0.68 -31.54 16 11 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 12 C 0.05 2.89 5.50 84.86 0.47 3.36 16 13 N -0.92 -56.65 13.97 21.65 0.30 -56.34 16 14 Si 0.91 46.18 27.74 68.60 1.90 48.08 16 15 H -0.26 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.25 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.24 -12.04 6.74 99.48 0.67 -11.37 16 18 N -0.57 -16.17 9.68 -321.89 -3.12 -19.29 16 19 C 0.36 9.06 7.21 136.64 0.99 10.05 16 20 C -0.13 -2.67 10.17 23.74 0.24 -2.43 16 21 C -0.05 -0.84 10.34 23.72 0.25 -0.59 16 22 C 0.03 0.42 6.92 43.32 0.30 0.72 16 23 N -0.38 -4.68 10.44 -181.22 -1.89 -6.57 16 24 C -0.05 -0.13 11.08 84.46 0.94 0.81 16 25 C 0.16 -0.48 11.20 84.05 0.94 0.46 16 26 N -0.51 -2.12 5.39 -187.41 -1.01 -3.13 16 27 H 0.45 -0.04 8.94 -92.70 -0.83 -0.87 16 28 C 0.38 5.73 7.84 135.88 1.06 6.79 16 29 N -0.64 -13.58 8.64 -183.83 -1.59 -15.17 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.40 12.46 7.85 -92.70 -0.73 11.73 16 36 H 0.10 4.31 8.14 -2.40 -0.02 4.29 16 37 H 0.11 4.34 8.14 -2.40 -0.02 4.32 16 38 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 39 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.22 -0.97 8.06 -2.91 -0.02 -0.99 16 42 H 0.25 -3.84 8.06 -2.91 -0.02 -3.86 16 Total: -1.00 -91.00 377.85 -1.23 -92.23 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -0.51 Total: 12.96 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 8.28 Total: 10.62 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -9.80 Total: -126.61 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -91.00 -1.23 -92.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097676504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.475 kcal (2) G-P(sol) polarization free energy of solvation -91.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds