Wall clock time and date at job start Wed Apr 1 2020 04:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39553 * 120.02280 * 327.47208 * 3 2 1 5 5 N 1.32015 * 119.96510 * 180.02562 * 4 3 2 6 6 C 1.32787 * 120.00734 * 0.02562 * 5 4 3 7 7 N 1.38562 * 119.98002 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00013 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47048 * 179.97438 * 8 7 6 10 10 H 1.08997 * 110.88689 * 302.56951 * 9 8 7 11 11 C 1.55156 * 111.00302 * 178.64689 * 9 8 7 12 12 C 1.54316 * 102.86567 * 206.22885 * 11 9 8 13 13 N 1.47029 * 107.27175 * 22.52711 * 12 11 9 14 14 C 1.34775 * 125.64627 * 180.97172 * 13 12 11 15 15 O 1.21284 * 120.00295 * 179.69512 * 14 13 12 16 16 C 1.50708 * 119.99957 * 359.68523 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47423 * 108.70358 * 0.70300 * 13 12 11 27 27 C 1.39709 * 120.03998 * 0.25602 * 6 5 4 28 28 N 1.31577 * 120.03574 * 359.47714 * 27 6 5 29 29 H 1.07998 * 120.02296 * 0.02562 * 4 3 2 30 30 H 0.97003 * 120.00118 * 359.97438 * 7 6 5 31 31 H 1.08998 * 109.46964 * 59.99939 * 8 7 6 32 32 H 1.08996 * 109.46695 * 299.99585 * 8 7 6 33 33 H 1.08999 * 110.72008 * 324.78562 * 11 9 8 34 34 H 1.09002 * 110.71857 * 88.06256 * 11 9 8 35 35 H 1.08994 * 109.98749 * 263.05236 * 12 11 9 36 36 H 1.08997 * 109.77669 * 141.88575 * 12 11 9 37 37 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 38 38 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 39 39 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 40 40 H 1.09000 * 110.36403 * 94.94143 * 26 13 12 41 41 H 1.09002 * 110.36383 * 217.15199 * 26 13 12 42 42 H 1.07998 * 119.98373 * 179.71891 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2666 -1.0178 0.6497 5 7 4.5868 -1.0158 0.6494 6 6 5.2493 -0.0449 0.0316 7 7 6.6349 -0.0431 0.0321 8 6 7.3663 1.0282 -0.6489 9 6 8.8707 0.7947 -0.4976 10 1 9.1520 0.7416 0.5541 11 6 9.6809 1.8927 -1.2361 12 6 11.0094 1.1785 -1.5625 13 7 10.7413 -0.2672 -1.5539 14 6 11.6515 -1.2361 -1.7758 15 8 11.3179 -2.4016 -1.7386 16 6 13.0838 -0.8713 -2.0703 17 16 14.0514 -2.3803 -2.3208 18 6 15.6363 -1.6785 -2.6373 19 1 15.7627 -0.6061 -2.6320 20 6 16.7222 -2.5042 -2.8933 21 7 16.5680 -3.8114 -2.9002 22 14 18.4026 -1.7601 -3.2280 23 1 19.3856 -2.8465 -3.4707 24 1 18.3269 -0.8852 -4.4257 25 1 18.8312 -0.9572 -2.0547 26 6 9.3135 -0.4815 -1.2559 27 6 4.5501 0.9780 -0.6139 28 7 3.2343 0.9748 -0.6191 29 1 2.7277 -1.8072 1.1525 30 1 7.1207 -0.7507 0.4840 31 1 7.1015 1.9879 -0.2051 32 1 7.1033 1.0321 -1.7066 33 1 9.1703 2.2009 -2.1484 34 1 9.8559 2.7477 -0.5830 35 1 11.7579 1.4211 -0.8084 36 1 11.3602 1.4845 -2.5480 37 1 13.4957 -0.3103 -1.2314 38 1 13.1250 -0.2599 -2.9717 39 1 15.6955 -4.1977 -2.7260 40 1 8.7454 -0.5902 -2.1798 41 1 9.1854 -1.3623 -0.6268 42 1 5.0898 1.7697 -1.1122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098508341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:13 Heat of formation + Delta-G solvation = 49.002103 kcal Electronic energy + Delta-G solvation = -25629.426458 eV Core-core repulsion = 21736.084002 eV Total energy + Delta-G solvation = -3893.342456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74559 -40.18898 -38.21069 -37.21250 -36.33499 -34.79673 -32.81848 -32.57990 -31.00896 -29.88985 -29.08099 -26.48485 -25.44881 -24.91200 -24.38924 -23.05106 -21.13290 -20.14209 -19.59949 -18.69696 -18.31032 -17.94435 -16.99212 -16.78451 -16.06319 -15.77887 -15.55191 -15.33788 -15.01339 -14.72646 -14.38319 -14.26886 -13.89057 -13.87171 -13.62070 -13.41523 -13.26854 -13.19909 -12.94179 -12.63426 -12.43401 -12.20950 -12.05977 -11.98868 -11.92710 -11.83523 -11.56327 -11.28946 -10.96052 -10.83559 -10.21329 -9.84023 -9.66463 -9.62292 -9.06501 -8.74116 -8.60583 -8.28757 -6.73914 -6.67112 -4.05960 -0.00784 0.49887 2.07678 2.16329 2.38371 2.65940 2.83555 3.06775 3.26863 3.33331 3.33981 3.37095 3.54044 3.69686 3.75860 3.90467 3.93591 4.08568 4.14820 4.20102 4.46471 4.57714 4.68904 4.73408 4.82179 4.85189 4.96339 5.02343 5.17518 5.25907 5.28893 5.35525 5.40952 5.48481 5.53056 5.66174 5.72660 5.92641 5.92848 6.18001 6.59570 6.69662 7.00291 7.19481 7.42262 7.86013 8.32517 8.44829 9.21777 10.76695 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.033635 B = 0.001543 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.273152 B =18145.027044 C =18766.036132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.279 3.721 3 C 0.052 3.948 4 C 0.173 3.827 5 N -0.502 5.502 6 C 0.385 3.615 7 N -0.698 5.698 8 C 0.129 3.871 9 C -0.117 4.117 10 H 0.098 0.902 11 C -0.120 4.120 12 C 0.100 3.900 13 N -0.627 5.627 14 C 0.547 3.453 15 O -0.514 6.514 16 C -0.124 4.124 17 S -0.116 6.116 18 C -0.608 4.608 19 H 0.066 0.934 20 C 0.036 3.964 21 N -0.883 5.883 22 Si 1.084 2.916 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.112 3.888 27 C 0.004 3.996 28 N -0.367 5.367 29 H 0.180 0.820 30 H 0.415 0.585 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.278 0.722 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.841 15.353 6.850 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.039 4.039 3 C -0.088 4.088 4 C 0.008 3.992 5 N -0.224 5.224 6 C 0.142 3.858 7 N -0.327 5.327 8 C 0.004 3.996 9 C -0.136 4.136 10 H 0.116 0.884 11 C -0.158 4.158 12 C -0.023 4.023 13 N -0.364 5.364 14 C 0.336 3.664 15 O -0.388 6.388 16 C -0.275 4.275 17 S 0.110 5.890 18 C -0.756 4.756 19 H 0.084 0.916 20 C -0.174 4.174 21 N -0.517 5.517 22 Si 0.910 3.090 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.012 4.012 27 C -0.170 4.170 28 N -0.081 5.081 29 H 0.197 0.803 30 H 0.252 0.748 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.315 13.294 6.428 26.759 hybrid contribution -0.385 1.726 0.435 1.821 sum -22.701 15.020 6.863 28.072 Atomic orbital electron populations 1.81283 1.11408 1.07022 1.07935 1.24633 0.91214 0.94074 0.93942 1.16907 0.87161 0.97730 1.07037 1.23463 0.88887 0.95350 0.91478 1.68157 1.08417 1.24605 1.21237 1.19631 0.86738 0.90202 0.89215 1.44671 1.01297 1.29449 1.57291 1.21628 0.90150 0.89979 0.97802 1.22627 0.93022 0.96434 1.01556 0.88420 1.22629 0.94817 0.97278 1.01070 1.22022 0.97626 0.80314 1.02356 1.48450 1.08771 1.06387 1.72826 1.20035 0.86371 0.84361 0.75657 1.90723 1.80290 1.18117 1.49672 1.23290 0.93804 1.05794 1.04649 1.84848 1.05364 1.05929 1.92877 1.23683 0.94443 0.96804 1.60692 0.91605 1.26058 1.03463 0.94591 0.93335 1.70807 1.27424 1.10762 1.42670 0.83333 0.73843 0.75252 0.76612 1.20235 1.21115 1.21113 1.22199 0.82159 0.97425 0.99384 1.23146 0.89487 1.00346 1.04014 1.68084 1.08374 1.20983 1.10655 0.80287 0.74758 0.90037 0.90225 0.89787 0.89281 0.90971 0.90894 0.89003 0.88995 0.90991 0.91320 0.90327 0.80647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.21 18.54 41.84 0.78 -3.44 16 2 C 0.28 2.37 15.56 -22.48 -0.35 2.02 16 3 C 0.05 0.37 6.59 -84.82 -0.56 -0.19 16 4 C 0.17 0.99 10.92 -16.98 -0.19 0.80 16 5 N -0.50 -3.49 10.52 -11.93 -0.13 -3.61 16 6 C 0.38 2.24 7.66 -154.90 -1.19 1.05 16 7 N -0.70 -2.97 5.56 -60.29 -0.34 -3.30 16 8 C 0.13 0.30 4.34 -4.04 -0.02 0.29 16 9 C -0.12 -0.49 3.10 -88.47 -0.27 -0.77 16 10 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 11 C -0.12 -0.46 6.42 -24.90 -0.16 -0.62 16 12 C 0.10 0.79 6.48 -3.06 -0.02 0.77 16 13 N -0.63 -7.56 3.33 -170.52 -0.57 -8.12 16 14 C 0.55 9.76 7.87 -10.98 -0.09 9.67 16 15 O -0.51 -11.26 16.12 5.55 0.09 -11.17 16 16 C -0.12 -2.42 5.35 36.01 0.19 -2.23 16 17 S -0.12 -3.07 19.60 -107.50 -2.11 -5.18 16 18 C -0.61 -17.15 9.50 30.94 0.29 -16.86 16 19 H 0.07 1.77 7.80 -52.49 -0.41 1.36 16 20 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 21 N -0.88 -27.07 13.67 55.49 0.76 -26.31 16 22 Si 1.08 24.36 29.92 -169.99 -5.09 19.27 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.11 0.97 6.08 -2.53 -0.02 0.96 16 27 C 0.00 0.02 10.48 -17.11 -0.18 -0.16 16 28 N -0.37 -2.77 10.41 -10.72 -0.11 -2.88 16 29 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.41 1.95 8.46 -40.82 -0.35 1.60 16 31 H 0.08 0.06 7.92 -51.93 -0.41 -0.35 16 32 H 0.08 0.14 7.90 -51.93 -0.41 -0.27 16 33 H 0.08 0.23 8.04 -51.93 -0.42 -0.19 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.28 8.70 7.12 -40.82 -0.29 8.41 16 40 H 0.07 0.59 8.00 -51.93 -0.42 0.17 16 41 H 0.08 0.79 8.03 -51.93 -0.42 0.38 16 42 H 0.18 0.44 6.70 -52.49 -0.35 0.09 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -37.77 381.71 -8.82 -46.60 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.22 Total: -3.28 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.64 Total: -4.33 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.39 Total: -47.66 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.09 Total: 19.27 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.11 Total: -5.18 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.77 -8.82 -46.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.599 kcal (2) G-P(sol) polarization free energy of solvation -37.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds