Wall clock time and date at job start Wed Apr 1 2020 04:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39553 * 120.02280 * 327.47208 * 3 2 1 5 5 N 1.32015 * 119.96510 * 180.02562 * 4 3 2 6 6 C 1.32787 * 120.00734 * 0.02562 * 5 4 3 7 7 N 1.38562 * 119.98002 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00013 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47048 * 179.97438 * 8 7 6 10 10 H 1.08997 * 110.88689 * 302.56951 * 9 8 7 11 11 C 1.55156 * 111.00302 * 178.64689 * 9 8 7 12 12 C 1.54316 * 102.86567 * 206.22885 * 11 9 8 13 13 N 1.47029 * 107.27175 * 22.52711 * 12 11 9 14 14 C 1.34775 * 125.64627 * 180.97172 * 13 12 11 15 15 O 1.21284 * 120.00295 * 179.69512 * 14 13 12 16 16 C 1.50708 * 119.99957 * 359.68523 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47423 * 108.70358 * 0.70300 * 13 12 11 27 27 C 1.39709 * 120.03998 * 0.25602 * 6 5 4 28 28 N 1.31577 * 120.03574 * 359.47714 * 27 6 5 29 29 H 1.07998 * 120.02296 * 0.02562 * 4 3 2 30 30 H 0.97003 * 120.00118 * 359.97438 * 7 6 5 31 31 H 1.08998 * 109.46964 * 59.99939 * 8 7 6 32 32 H 1.08996 * 109.46695 * 299.99585 * 8 7 6 33 33 H 1.08999 * 110.72008 * 324.78562 * 11 9 8 34 34 H 1.09002 * 110.71857 * 88.06256 * 11 9 8 35 35 H 1.08994 * 109.98749 * 263.05236 * 12 11 9 36 36 H 1.08997 * 109.77669 * 141.88575 * 12 11 9 37 37 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 38 38 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 39 39 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 40 40 H 1.09000 * 110.36403 * 94.94143 * 26 13 12 41 41 H 1.09002 * 110.36383 * 217.15199 * 26 13 12 42 42 H 1.07998 * 119.98373 * 179.71891 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2666 -1.0178 0.6497 5 7 4.5868 -1.0158 0.6494 6 6 5.2493 -0.0449 0.0316 7 7 6.6349 -0.0431 0.0321 8 6 7.3663 1.0282 -0.6489 9 6 8.8707 0.7947 -0.4976 10 1 9.1520 0.7416 0.5541 11 6 9.6809 1.8927 -1.2361 12 6 11.0094 1.1785 -1.5625 13 7 10.7413 -0.2672 -1.5539 14 6 11.6515 -1.2361 -1.7758 15 8 11.3179 -2.4016 -1.7386 16 6 13.0838 -0.8713 -2.0703 17 16 14.0514 -2.3803 -2.3208 18 6 15.6363 -1.6785 -2.6373 19 1 15.7627 -0.6061 -2.6320 20 6 16.7222 -2.5042 -2.8933 21 7 16.5680 -3.8114 -2.9002 22 14 18.4026 -1.7601 -3.2280 23 1 19.3856 -2.8465 -3.4707 24 1 18.3269 -0.8852 -4.4257 25 1 18.8312 -0.9572 -2.0547 26 6 9.3135 -0.4815 -1.2559 27 6 4.5501 0.9780 -0.6139 28 7 3.2343 0.9748 -0.6191 29 1 2.7277 -1.8072 1.1525 30 1 7.1207 -0.7507 0.4840 31 1 7.1015 1.9879 -0.2051 32 1 7.1033 1.0321 -1.7066 33 1 9.1703 2.2009 -2.1484 34 1 9.8559 2.7477 -0.5830 35 1 11.7579 1.4211 -0.8084 36 1 11.3602 1.4845 -2.5480 37 1 13.4957 -0.3103 -1.2314 38 1 13.1250 -0.2599 -2.9717 39 1 15.6955 -4.1977 -2.7260 40 1 8.7454 -0.5902 -2.1798 41 1 9.1854 -1.3623 -0.6268 42 1 5.0898 1.7697 -1.1122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098508341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:12 Heat of formation + Delta-G solvation = 21.400931 kcal Electronic energy + Delta-G solvation = -25630.623335 eV Core-core repulsion = 21736.084002 eV Total energy + Delta-G solvation = -3894.539333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.17369 -41.15079 -39.07807 -37.92140 -36.96000 -35.26710 -34.75487 -33.58933 -31.63836 -30.94303 -29.84152 -27.30026 -26.84184 -25.89549 -25.01568 -23.65378 -21.57052 -20.89274 -20.64108 -20.12759 -19.10950 -18.42749 -18.08552 -17.63531 -16.94937 -16.59332 -16.29904 -16.10246 -15.83028 -15.68241 -15.61871 -15.16227 -15.06518 -14.61464 -14.53700 -14.35743 -14.10299 -14.07762 -13.90832 -13.77117 -13.62043 -13.49500 -13.08345 -12.73331 -12.67184 -12.47258 -12.28478 -12.06769 -11.95189 -11.66243 -11.56125 -11.20307 -11.09748 -11.07106 -10.33911 -10.27682 -9.75371 -8.97635 -8.92929 -8.89391 -6.29014 -0.46683 0.08314 1.14988 1.45396 1.45639 1.52245 1.61102 1.81068 1.81175 1.82383 2.00665 2.34007 2.54705 2.84828 3.02207 3.07922 3.28434 3.35925 3.46796 3.52786 3.64548 3.73311 3.83210 4.03937 4.09149 4.24298 4.30624 4.31403 4.39020 4.52174 4.57221 4.68960 4.78373 4.82292 4.95106 5.01915 5.10621 5.28984 5.38752 5.59207 5.63239 6.13883 6.17337 6.25409 6.30134 6.44368 6.78772 7.01488 7.05988 8.50420 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.033635 B = 0.001543 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.273152 B =18145.027044 C =18766.036132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.301 3.699 3 C 0.032 3.968 4 C 0.182 3.818 5 N -0.528 5.528 6 C 0.384 3.616 7 N -0.693 5.693 8 C 0.127 3.873 9 C -0.098 4.098 10 H 0.101 0.899 11 C -0.105 4.105 12 C 0.083 3.917 13 N -0.616 5.616 14 C 0.543 3.457 15 O -0.570 6.570 16 C -0.099 4.099 17 S -0.199 6.199 18 C -0.613 4.613 19 H 0.076 0.924 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.136 2.864 23 H -0.281 1.281 24 H -0.262 1.262 25 H -0.262 1.262 26 C 0.101 3.899 27 C 0.013 3.987 28 N -0.389 5.389 29 H 0.202 0.798 30 H 0.412 0.588 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.609 19.209 6.999 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.015 4.015 3 C -0.107 4.107 4 C 0.018 3.982 5 N -0.251 5.251 6 C 0.140 3.860 7 N -0.321 5.321 8 C 0.004 3.996 9 C -0.118 4.118 10 H 0.119 0.881 11 C -0.143 4.143 12 C -0.039 4.039 13 N -0.351 5.351 14 C 0.330 3.670 15 O -0.449 6.449 16 C -0.251 4.251 17 S 0.028 5.972 18 C -0.761 4.761 19 H 0.094 0.906 20 C -0.221 4.221 21 N -0.548 5.548 22 Si 0.954 3.046 23 H -0.206 1.206 24 H -0.187 1.187 25 H -0.187 1.187 26 C -0.021 4.021 27 C -0.162 4.162 28 N -0.104 5.104 29 H 0.218 0.782 30 H 0.249 0.751 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -22.144 17.227 6.592 28.820 hybrid contribution -0.454 0.619 0.407 0.869 sum -22.598 17.846 6.999 29.633 Atomic orbital electron populations 1.81290 1.12643 1.08636 1.09763 1.24845 0.91426 0.92712 0.92559 1.16867 0.86331 0.98804 1.08703 1.23738 0.88638 0.95233 0.90633 1.68203 1.08865 1.25585 1.22425 1.19830 0.87243 0.90077 0.88824 1.44845 1.00849 1.29696 1.56700 1.21841 0.88259 0.90567 0.98901 1.22526 0.94450 0.93790 1.01032 0.88105 1.22670 0.92026 0.97079 1.02537 1.22470 1.00644 0.77753 1.02984 1.48415 1.09313 1.07396 1.69929 1.19717 0.86518 0.84607 0.76123 1.90698 1.80997 1.20464 1.52710 1.23151 0.94133 1.01784 1.06009 1.85098 1.06983 1.11922 1.93220 1.24017 0.94919 0.97320 1.59810 0.90581 1.27842 1.07816 0.94213 0.92248 1.70925 1.26480 1.12228 1.45187 0.82726 0.68864 0.74925 0.78121 1.20645 1.18706 1.18670 1.22502 0.80101 0.99456 1.00021 1.23609 0.88771 1.00618 1.03233 1.68052 1.09501 1.21470 1.11333 0.78169 0.75114 0.86817 0.88720 0.87694 0.86397 0.90556 0.90435 0.87358 0.87403 0.92920 0.90858 0.92353 0.77512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.64 18.54 19.00 0.35 -9.28 16 2 C 0.30 5.12 15.56 88.33 1.37 6.50 16 3 C 0.03 0.43 6.59 40.49 0.27 0.70 16 4 C 0.18 1.90 10.92 84.98 0.93 2.82 16 5 N -0.53 -6.58 10.52 -191.65 -2.02 -8.59 16 6 C 0.38 3.51 7.66 133.24 1.02 4.53 16 7 N -0.69 -3.79 5.56 -344.66 -1.92 -5.71 16 8 C 0.13 -0.01 4.34 86.38 0.38 0.37 16 9 C -0.10 -0.43 3.10 -9.40 -0.03 -0.46 16 10 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 11 C -0.11 -0.25 6.42 31.78 0.20 -0.05 16 12 C 0.08 1.03 6.48 86.73 0.56 1.59 16 13 N -0.62 -13.87 3.33 -811.79 -2.70 -16.57 16 14 C 0.54 19.41 7.87 87.66 0.69 20.10 16 15 O -0.57 -25.98 16.12 -3.04 -0.05 -26.03 16 16 C -0.10 -3.84 5.35 71.24 0.38 -3.46 16 17 S -0.20 -10.84 19.60 -56.49 -1.11 -11.95 16 18 C -0.61 -34.77 9.50 67.95 0.65 -34.12 16 19 H 0.08 4.01 7.80 -2.92 -0.02 3.99 16 20 C -0.02 -1.03 5.49 84.86 0.47 -0.57 16 21 N -0.91 -57.53 13.67 21.65 0.30 -57.24 16 22 Si 1.14 48.14 29.92 68.60 2.05 50.19 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 26 C 0.10 1.58 6.08 86.86 0.53 2.11 16 27 C 0.01 0.10 10.48 85.09 0.89 0.99 16 28 N -0.39 -5.22 10.41 -187.84 -1.96 -7.17 16 29 H 0.20 0.94 8.06 -2.91 -0.02 0.92 16 30 H 0.41 3.03 8.46 -92.71 -0.78 2.25 16 31 H 0.11 -0.57 7.92 -2.39 -0.02 -0.59 16 32 H 0.09 -0.18 7.90 -2.39 -0.02 -0.20 16 33 H 0.10 -0.08 8.04 -2.39 -0.02 -0.10 16 34 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 38 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 39 H 0.26 17.07 7.12 -92.71 -0.66 16.41 16 40 H 0.07 1.10 8.00 -2.39 -0.02 1.08 16 41 H 0.06 1.17 8.03 -2.39 -0.02 1.15 16 42 H 0.21 0.05 6.70 -2.91 -0.02 0.03 16 Total: -1.00 -88.49 381.71 1.66 -86.84 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.40 Total: 4.47 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 8.30 Total: 1.04 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -7.94 Total: -104.56 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.05 Total: 50.19 kcal Atomic # 16 Polarization: -10.84 SS G_CDS: -1.11 Total: -11.95 kcal Total: -88.49 1.66 -86.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.239 kcal (2) G-P(sol) polarization free energy of solvation -88.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds