Wall clock time and date at job start Wed Apr 1 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 N 1.31035 * 119.06503 * 222.56787 * 3 2 1 5 5 C 1.35158 * 120.54873 * 180.26473 * 4 3 2 6 6 N 1.31902 * 120.57139 * 179.73653 * 5 4 3 7 7 C 1.46502 * 120.00120 * 359.71924 * 6 5 4 8 8 C 1.53005 * 109.46813 * 120.00202 * 7 6 5 9 9 H 1.08999 * 110.88386 * 302.56898 * 8 7 6 10 10 C 1.55157 * 111.00109 * 178.65187 * 8 7 6 11 11 C 1.54320 * 102.86305 * 206.22564 * 10 8 7 12 12 N 1.47021 * 107.27206 * 22.52785 * 11 10 8 13 13 C 1.34781 * 125.64992 * 180.96769 * 12 11 10 14 14 O 1.21274 * 120.00344 * 179.69253 * 13 12 11 15 15 C 1.50701 * 119.99423 * 359.69048 * 13 12 11 16 16 S 1.81001 * 109.46896 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99894 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00034 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48490 * 109.46901 * 150.00205 * 21 19 17 25 25 C 1.47422 * 108.70588 * 0.70247 * 12 11 10 26 26 C 1.46877 * 118.85263 * 359.46601 * 5 4 3 27 27 C 1.34948 * 118.31181 * 0.24736 * 26 5 4 28 28 N 1.36218 * 119.06693 * 42.26565 * 3 2 1 29 29 H 0.96996 * 119.43747 * 0.02562 * 28 3 2 30 30 H 1.09001 * 109.46884 * 0.02562 * 7 6 5 31 31 H 1.09000 * 109.47619 * 239.99832 * 7 6 5 32 32 H 1.08996 * 110.72535 * 324.78725 * 10 8 7 33 33 H 1.09001 * 110.72149 * 87.88400 * 10 8 7 34 34 H 1.08996 * 109.98932 * 263.05231 * 11 10 8 35 35 H 1.09002 * 109.77309 * 141.88276 * 11 10 8 36 36 H 1.09001 * 109.47454 * 60.00304 * 15 13 12 37 37 H 1.09003 * 109.47322 * 299.99933 * 15 13 12 38 38 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 39 39 H 1.09006 * 110.36753 * 94.93529 * 25 12 11 40 40 H 1.09003 * 110.37314 * 217.26100 * 25 12 11 41 41 H 1.08002 * 120.84574 * 180.27608 * 26 5 4 42 42 H 1.07997 * 120.36170 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.2042 0.8444 0.7748 5 6 4.5554 0.8745 0.7945 6 7 5.1962 1.7272 1.5704 7 6 4.4432 2.6567 2.4160 8 6 4.7997 2.4138 3.8840 9 1 4.5967 1.3810 4.1674 10 6 4.0459 3.4040 4.8106 11 6 4.9711 3.4941 6.0423 12 7 6.3185 3.0995 5.6060 13 6 7.4101 3.0295 6.3934 14 8 8.4744 2.6848 5.9252 15 6 7.3080 3.3794 7.8556 16 16 8.9300 3.1890 8.6362 17 6 8.5296 3.6480 10.2896 18 1 7.5185 3.9320 10.5414 19 6 9.5137 3.6447 11.2684 20 7 10.7462 3.2991 10.9613 21 14 9.0895 4.1320 13.0211 22 1 9.2780 5.5956 13.1874 23 1 7.6748 3.7799 13.3041 24 1 9.9782 3.4080 13.9650 25 6 6.2765 2.7870 4.1659 26 6 5.2976 -0.0629 -0.0585 27 6 4.5959 -0.9159 -0.8339 28 7 3.2302 -0.8802 -0.8008 29 1 2.7238 -1.4922 -1.3573 30 1 3.3749 2.4963 2.2706 31 1 4.6972 3.6816 2.1453 32 1 3.9404 4.3770 4.3308 33 1 3.0704 3.0052 5.0889 34 1 4.6209 2.8175 6.8217 35 1 4.9877 4.5176 6.4169 36 1 6.5916 2.7153 8.3391 37 1 6.9741 4.4118 7.9597 38 1 11.4340 3.2972 11.6453 39 1 6.5658 3.6594 3.5798 40 1 6.9302 1.9442 3.9412 41 1 6.3776 -0.0698 -0.0646 42 1 5.1081 -1.6194 -1.4735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098508569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:35 Heat of formation + Delta-G solvation = 47.175770 kcal Electronic energy + Delta-G solvation = -25762.455674 eV Core-core repulsion = 21869.034022 eV Total energy + Delta-G solvation = -3893.421652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92666 -41.05883 -38.81971 -38.03815 -36.92940 -34.59862 -34.53448 -33.66203 -31.99439 -30.85364 -29.81808 -27.72292 -26.77129 -26.66842 -24.44686 -23.07592 -21.40312 -20.94604 -20.66063 -19.57061 -19.20311 -18.66851 -18.06398 -17.41245 -16.89183 -16.69836 -16.58231 -16.49817 -15.97500 -15.57430 -15.19207 -15.02966 -14.67341 -14.49573 -14.45398 -14.41267 -14.31370 -13.96811 -13.96547 -13.59382 -13.33956 -13.30148 -13.16218 -12.89137 -12.62315 -12.52985 -12.17608 -12.13173 -11.74002 -11.67955 -11.34801 -11.19770 -11.14790 -10.99274 -10.30128 -10.13057 -9.71170 -8.69693 -8.59844 -8.35026 -6.14464 -0.57043 0.48740 0.88935 1.22785 1.38145 1.42581 1.44168 1.53832 1.56134 1.67834 2.09629 2.26625 2.53112 2.72874 2.98718 3.16213 3.28784 3.58112 3.59253 3.62586 3.88351 3.92106 4.18714 4.19885 4.27441 4.31300 4.40584 4.44459 4.50462 4.65251 4.80103 4.81676 4.86080 4.92902 4.96011 5.07803 5.14735 5.28411 5.37594 5.40808 5.49199 5.81191 6.09827 6.19270 6.39413 6.68422 7.05413 7.07853 7.09028 8.74494 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.001685 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.117827 B =16613.239321 C =17220.038049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C 0.277 3.723 3 C 0.508 3.492 4 N -0.555 5.555 5 C 0.340 3.660 6 N -0.577 5.577 7 C 0.066 3.934 8 C -0.077 4.077 9 H 0.068 0.932 10 C -0.111 4.111 11 C 0.091 3.909 12 N -0.621 5.621 13 C 0.543 3.457 14 O -0.569 6.569 15 C -0.118 4.118 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.002 2.998 22 H -0.267 1.267 23 H -0.258 1.258 24 H -0.276 1.276 25 C 0.125 3.875 26 C -0.222 4.222 27 C 0.157 3.843 28 N -0.596 5.596 29 H 0.447 0.553 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.272 0.728 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.161 0.839 42 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.275 -10.087 -29.643 39.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.040 5.040 2 C -0.044 4.044 3 C 0.230 3.770 4 N -0.285 5.285 5 C 0.065 3.935 6 N -0.298 5.298 7 C -0.065 4.065 8 C -0.096 4.096 9 H 0.087 0.913 10 C -0.150 4.150 11 C -0.031 4.031 12 N -0.355 5.355 13 C 0.331 3.669 14 O -0.448 6.448 15 C -0.269 4.269 16 S 0.076 5.924 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.823 3.177 22 H -0.192 1.192 23 H -0.182 1.182 24 H -0.201 1.201 25 C 0.003 3.997 26 C -0.252 4.252 27 C 0.032 3.968 28 N -0.219 5.219 29 H 0.289 0.711 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.179 0.821 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -22.447 -9.560 -29.270 38.105 hybrid contribution -0.924 0.099 1.077 1.423 sum -23.372 -9.461 -28.193 37.823 Atomic orbital electron populations 1.81414 1.11649 1.05479 1.05470 1.24261 0.90481 0.94799 0.94830 1.16531 0.84935 0.87492 0.88053 1.69175 1.12142 1.23887 1.23316 1.21660 0.84286 0.93699 0.93839 1.73526 1.34279 1.09974 1.12051 1.21739 0.97949 0.96390 0.90423 1.22212 0.92742 0.99539 0.95157 0.91303 1.22682 0.98412 1.00481 0.93380 1.22348 0.80450 1.01454 0.98818 1.48573 1.09346 1.67346 1.10273 1.19849 0.82701 0.76734 0.87578 1.90672 1.29395 1.48777 1.75996 1.23296 1.03678 1.05768 0.94163 1.85597 1.09692 1.89479 1.07602 1.23194 0.99071 1.53057 0.94151 0.89905 1.26173 0.94097 0.94355 1.04564 1.70195 1.02480 1.46012 1.36054 0.84911 0.78763 0.78525 0.75500 1.19204 1.18177 1.20124 1.22134 0.98146 0.99804 0.79651 1.22389 1.02370 0.99178 1.01274 1.22692 0.80040 0.97458 0.96654 1.42110 1.07552 1.33406 1.38805 0.71125 0.91361 0.90900 0.88805 0.87539 0.90410 0.89922 0.87617 0.87476 0.91927 0.91810 0.93114 0.82103 0.74496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -4.47 18.54 19.00 0.35 -4.12 16 2 C 0.28 2.20 15.62 88.33 1.38 3.58 16 3 C 0.51 3.36 7.48 135.43 1.01 4.37 16 4 N -0.56 -8.43 8.73 -186.88 -1.63 -10.06 16 5 C 0.34 6.11 7.60 136.53 1.04 7.15 16 6 N -0.58 -14.06 10.44 -341.17 -3.56 -17.62 16 7 C 0.07 1.47 5.80 86.38 0.50 1.97 16 8 C -0.08 -1.79 3.29 -9.40 -0.03 -1.82 16 9 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 10 C -0.11 -1.98 6.42 31.78 0.20 -1.78 16 11 C 0.09 2.14 6.48 86.73 0.56 2.70 16 12 N -0.62 -20.93 3.33 -811.81 -2.70 -23.63 16 13 C 0.54 23.87 7.87 87.66 0.69 24.56 16 14 O -0.57 -30.40 16.12 -3.01 -0.05 -30.45 16 15 C -0.12 -5.25 5.35 71.24 0.38 -4.87 16 16 S -0.15 -8.90 20.57 -56.49 -1.16 -10.07 16 17 C -0.55 -32.47 9.50 67.96 0.65 -31.82 16 18 H 0.08 4.56 7.80 -2.92 -0.02 4.54 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -57.46 13.22 21.65 0.29 -57.17 16 21 Si 1.00 44.73 29.55 68.60 2.03 46.76 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 25 C 0.12 3.89 6.20 86.85 0.54 4.43 16 26 C -0.22 -1.94 10.29 23.78 0.24 -1.69 16 27 C 0.16 -0.37 11.28 83.18 0.94 0.57 16 28 N -0.60 1.55 5.31 -192.00 -1.02 0.53 16 29 H 0.45 -4.82 8.73 -92.71 -0.81 -5.63 16 30 H 0.07 1.44 6.70 -2.39 -0.02 1.43 16 31 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.09 1.42 8.04 -2.39 -0.02 1.40 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 37 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 38 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.06 1.99 8.00 -2.38 -0.02 1.97 16 40 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 41 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.24 -3.11 8.06 -2.91 -0.02 -3.13 16 Total: -1.00 -95.10 384.50 1.38 -93.72 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 0.26 Total: 3.55 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 8.57 Total: 8.56 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -8.27 Total: -112.07 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.16 Total: -10.07 kcal Total: -95.10 1.38 -93.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.899 kcal (2) G-P(sol) polarization free energy of solvation -95.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds