Wall clock time and date at job start Wed Apr 1 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48494 * 109.47314 * 269.99988 * 3 2 1 5 5 H 1.48497 * 109.47174 * 30.00552 * 3 2 1 6 6 H 1.48505 * 109.46712 * 150.00058 * 3 2 1 7 7 C 1.38813 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99904 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00165 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47383 * 180.02562 * 10 9 7 12 12 C 1.35345 * 126.75654 * 95.29041 * 11 10 9 13 13 N 1.35310 * 106.17538 * 180.12486 * 12 11 10 14 14 C 1.46502 * 125.86497 * 179.90692 * 13 12 11 15 15 H 1.08998 * 110.88794 * 157.15121 * 14 13 12 16 16 C 1.55165 * 111.03713 * 281.04863 * 14 13 12 17 17 C 1.54333 * 103.02112 * 153.39687 * 16 14 13 18 18 N 1.47025 * 107.26629 * 338.14352 * 17 16 14 19 19 C 1.34771 * 125.65186 * 178.85189 * 18 17 16 20 20 O 1.21636 * 120.00253 * 184.79971 * 19 18 17 21 21 C 1.47194 * 119.99628 * 5.06903 * 19 18 17 22 22 C 1.44419 * 123.46133 * 353.73953 * 21 19 18 23 23 C 1.32776 * 113.08481 * 179.97438 * 22 21 19 24 24 S 1.75506 * 110.57431 * 359.97438 * 23 22 21 25 25 C 1.36014 * 123.45896 * 173.44173 * 21 19 18 26 26 C 1.47431 * 108.70259 * 358.58087 * 18 17 16 27 27 N 1.28711 * 108.26535 * 359.64390 * 13 12 11 28 28 N 1.28636 * 110.17928 * 0.22930 * 27 13 12 29 29 H 0.97000 * 120.00502 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99925 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46984 * 59.99744 * 10 9 7 32 32 H 1.09004 * 109.47036 * 300.00279 * 10 9 7 33 33 H 1.08003 * 126.90849 * 0.02562 * 12 11 10 34 34 H 1.08997 * 110.71735 * 271.95492 * 16 14 13 35 35 H 1.08998 * 110.71631 * 35.04812 * 16 14 13 36 36 H 1.08992 * 109.99376 * 218.67041 * 17 16 14 37 37 H 1.08999 * 109.77753 * 97.49469 * 17 16 14 38 38 H 1.07999 * 123.46091 * 359.97438 * 22 21 19 39 39 H 1.07994 * 124.71556 * 180.02562 * 23 22 21 40 40 H 1.08002 * 124.59002 * 359.97438 * 25 21 19 41 41 H 1.09005 * 110.36512 * 143.19493 * 26 18 17 42 42 H 1.08991 * 110.36789 * 265.52062 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0788 -4.8023 -0.0012 12 6 0.6289 -5.4826 -1.0812 13 7 -0.2299 -6.4152 -0.6084 14 6 -0.9684 -7.3896 -1.4155 15 1 -1.2586 -8.2516 -0.8147 16 6 -2.2066 -6.7353 -2.0835 17 6 -2.4235 -7.6042 -3.3404 18 7 -1.1456 -8.2674 -3.6383 19 6 -0.9255 -9.1306 -4.6495 20 8 0.1511 -9.6878 -4.7502 21 6 -1.9860 -9.3947 -5.6356 22 6 -3.3282 -8.8745 -5.5200 23 6 -4.1165 -9.2400 -6.5240 24 16 -3.2381 -10.2454 -7.6632 25 6 -1.8008 -10.1490 -6.7521 26 6 -0.1429 -7.8266 -2.6513 27 7 -0.2822 -6.3028 0.6727 28 7 0.4869 -5.3498 1.0663 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7145 0.8895 32 1 2.6847 -3.7145 -0.8905 33 1 0.8996 -5.3138 -2.1131 34 1 -3.0724 -6.7852 -1.4233 35 1 -1.9943 -5.7029 -2.3614 36 1 -2.7200 -6.9766 -4.1807 37 1 -3.1920 -8.3517 -3.1439 38 1 -3.6571 -8.2520 -4.7011 39 1 -5.1537 -8.9572 -6.6260 40 1 -0.8694 -10.6234 -7.0241 41 1 0.5215 -8.6508 -2.3916 42 1 0.4295 -6.9854 -3.0419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098608225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:58 Heat of formation + Delta-G solvation = 141.519064 kcal Electronic energy + Delta-G solvation = -26803.757644 eV Core-core repulsion = 22914.427024 eV Total energy + Delta-G solvation = -3889.330620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.07920 -40.80745 -38.32094 -37.24968 -35.09085 -34.04956 -31.92515 -31.18103 -30.25769 -29.93510 -29.58498 -26.16596 -25.66468 -24.15307 -23.19473 -22.81061 -21.16790 -20.85378 -20.64160 -19.84576 -18.47355 -17.76782 -17.05672 -16.74871 -16.39196 -15.99581 -15.69980 -15.17252 -14.86817 -14.60646 -14.37061 -14.13482 -13.85908 -13.61201 -13.45949 -13.33435 -13.17674 -13.05840 -12.97744 -12.65685 -12.23066 -12.17958 -11.95639 -11.52753 -11.34866 -11.24814 -10.90244 -10.80449 -10.54161 -10.42139 -10.09176 -9.89529 -9.72228 -9.60877 -9.25090 -8.98255 -8.89873 -8.85656 -6.91650 -5.73997 -3.03466 0.29012 1.01066 1.35456 1.45774 1.74581 2.02473 2.64571 2.86272 2.88109 3.45915 3.51183 3.53237 3.63604 3.82914 4.14703 4.22140 4.35033 4.37867 4.49882 4.62972 4.74611 4.75737 4.89426 4.93123 5.08575 5.14028 5.21490 5.24539 5.34281 5.38856 5.47984 5.49210 5.62592 5.63395 5.71179 5.81211 6.17308 6.38221 6.64979 6.71146 6.77814 6.87570 7.63816 7.71698 8.43345 8.79773 9.55242 10.10670 10.46728 11.48806 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.001999 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.785520 B =14000.841569 C =14779.282678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.232 3.768 11 C -0.001 4.001 12 C -0.045 4.045 13 N -0.292 5.292 14 C 0.136 3.864 15 H 0.130 0.870 16 C -0.145 4.145 17 C 0.096 3.904 18 N -0.612 5.612 19 C 0.600 3.400 20 O -0.532 6.532 21 C -0.163 4.163 22 C -0.133 4.133 23 C -0.232 4.232 24 S 0.190 5.810 25 C -0.177 4.177 26 C 0.102 3.898 27 N -0.092 5.092 28 N -0.251 5.251 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.188 0.812 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.177 0.823 41 H 0.098 0.902 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 -24.122 -16.312 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.370 5.370 10 C 0.103 3.897 11 C -0.138 4.138 12 C -0.195 4.195 13 N -0.086 5.086 14 C 0.031 3.969 15 H 0.148 0.852 16 C -0.184 4.184 17 C -0.027 4.027 18 N -0.347 5.347 19 C 0.389 3.611 20 O -0.410 6.410 21 C -0.180 4.180 22 C -0.161 4.161 23 C -0.367 4.367 24 S 0.456 5.544 25 C -0.316 4.316 26 C -0.022 4.022 27 N -0.070 5.070 28 N -0.118 5.118 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.205 0.795 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.186 0.814 39 H 0.188 0.812 40 H 0.194 0.806 41 H 0.116 0.884 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.463 -25.627 -16.466 32.546 hybrid contribution 0.807 2.054 0.275 2.224 sum -10.656 -23.573 -16.191 30.518 Atomic orbital electron populations 1.69677 1.05170 1.25631 1.57627 1.24757 0.95535 0.97725 1.02948 0.86154 0.78683 0.83689 0.77447 1.21747 1.21801 1.20652 1.19236 0.91117 0.83804 1.42827 0.90865 1.42296 1.05960 0.99243 1.89539 1.18965 0.90054 0.81365 0.99364 1.22466 1.02455 1.00562 0.88324 1.23314 0.98907 0.95160 1.02132 1.47012 1.30559 1.24446 1.06600 1.22573 0.91742 0.91155 0.91386 0.85222 1.23208 0.98210 1.00822 0.96157 1.22565 0.86568 0.96002 0.97606 1.48031 1.12051 1.45057 1.29516 1.17235 0.86758 0.77662 0.79438 1.90835 1.26022 1.49766 1.74354 1.20089 0.94713 1.05368 0.97845 1.22131 0.91639 1.01620 1.00738 1.25612 1.04770 1.06417 0.99873 1.83208 0.99265 1.47306 1.24645 1.25638 1.04824 1.02569 0.98548 1.22467 0.91339 1.01816 0.86583 1.78295 1.19652 1.17081 0.91963 1.75118 1.06477 1.04035 1.26182 0.93537 0.78123 0.94230 0.94417 0.79537 0.87919 0.88570 0.89361 0.89658 0.81440 0.81165 0.80595 0.88403 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.90 5.59 -61.09 -0.34 -19.24 16 10 C 0.23 4.86 6.82 -5.20 -0.04 4.83 16 11 C 0.00 -0.01 6.61 -82.78 -0.55 -0.56 16 12 C -0.05 -0.66 10.60 -17.05 -0.18 -0.85 16 13 N -0.29 -3.92 3.38 -52.68 -0.18 -4.10 16 14 C 0.14 1.20 4.08 -65.78 -0.27 0.93 16 15 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.15 -0.99 6.64 -24.89 -0.17 -1.15 16 17 C 0.10 0.51 4.91 -3.06 -0.02 0.50 16 18 N -0.61 -5.11 3.33 -171.86 -0.57 -5.68 16 19 C 0.60 6.31 7.81 -12.63 -0.10 6.21 16 20 O -0.53 -7.47 16.97 5.25 0.09 -7.38 16 21 C -0.16 -1.36 5.96 -104.63 -0.62 -1.98 16 22 C -0.13 -0.77 8.86 -39.02 -0.35 -1.12 16 23 C -0.23 -1.11 11.12 28.86 0.32 -0.79 16 24 S 0.19 0.96 23.02 -107.50 -2.48 -1.52 16 25 C -0.18 -1.32 10.53 29.93 0.32 -1.00 16 26 C 0.10 0.90 6.36 -2.53 -0.02 0.88 16 27 N -0.09 -1.57 13.16 60.35 0.79 -0.78 16 28 N -0.25 -5.04 12.41 33.29 0.41 -4.63 16 29 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.39 10.78 7.66 -40.82 -0.31 10.47 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.19 2.19 7.01 -52.48 -0.37 1.82 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.39 6.78 -51.93 -0.35 0.04 16 37 H 0.09 0.30 6.79 -51.93 -0.35 -0.05 16 38 H 0.17 0.64 3.80 -52.49 -0.20 0.44 16 39 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 40 H 0.18 1.26 8.03 -52.49 -0.42 0.84 16 41 H 0.10 0.93 7.99 -51.93 -0.41 0.51 16 42 H 0.09 0.78 6.38 -51.93 -0.33 0.45 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -36.70 366.93 -7.78 -44.48 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.83 Total: 5.17 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.91 Total: -1.48 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.84 Total: -62.28 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.38 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.48 Total: -1.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.70 -7.78 -44.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098608225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.999 kcal (2) G-P(sol) polarization free energy of solvation -36.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds