Wall clock time and date at job start Wed Apr 1 2020 04:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48494 * 109.47314 * 269.99988 * 3 2 1 5 5 H 1.48497 * 109.47174 * 30.00552 * 3 2 1 6 6 H 1.48505 * 109.46712 * 150.00058 * 3 2 1 7 7 C 1.38813 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99904 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00165 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47383 * 180.02562 * 10 9 7 12 12 C 1.35345 * 126.75654 * 95.29041 * 11 10 9 13 13 N 1.35310 * 106.17538 * 180.12486 * 12 11 10 14 14 C 1.46502 * 125.86497 * 179.90692 * 13 12 11 15 15 H 1.08998 * 110.88794 * 157.15121 * 14 13 12 16 16 C 1.55165 * 111.03713 * 281.04863 * 14 13 12 17 17 C 1.54333 * 103.02112 * 153.39687 * 16 14 13 18 18 N 1.47025 * 107.26629 * 338.14352 * 17 16 14 19 19 C 1.34771 * 125.65186 * 178.85189 * 18 17 16 20 20 O 1.21636 * 120.00253 * 184.79971 * 19 18 17 21 21 C 1.47194 * 119.99628 * 5.06903 * 19 18 17 22 22 C 1.44419 * 123.46133 * 353.73953 * 21 19 18 23 23 C 1.32776 * 113.08481 * 179.97438 * 22 21 19 24 24 S 1.75506 * 110.57431 * 359.97438 * 23 22 21 25 25 C 1.36014 * 123.45896 * 173.44173 * 21 19 18 26 26 C 1.47431 * 108.70259 * 358.58087 * 18 17 16 27 27 N 1.28711 * 108.26535 * 359.64390 * 13 12 11 28 28 N 1.28636 * 110.17928 * 0.22930 * 27 13 12 29 29 H 0.97000 * 120.00502 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99925 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46984 * 59.99744 * 10 9 7 32 32 H 1.09004 * 109.47036 * 300.00279 * 10 9 7 33 33 H 1.08003 * 126.90849 * 0.02562 * 12 11 10 34 34 H 1.08997 * 110.71735 * 271.95492 * 16 14 13 35 35 H 1.08998 * 110.71631 * 35.04812 * 16 14 13 36 36 H 1.08992 * 109.99376 * 218.67041 * 17 16 14 37 37 H 1.08999 * 109.77753 * 97.49469 * 17 16 14 38 38 H 1.07999 * 123.46091 * 359.97438 * 22 21 19 39 39 H 1.07994 * 124.71556 * 180.02562 * 23 22 21 40 40 H 1.08002 * 124.59002 * 359.97438 * 25 21 19 41 41 H 1.09005 * 110.36512 * 143.19493 * 26 18 17 42 42 H 1.08991 * 110.36789 * 265.52062 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0788 -4.8023 -0.0012 12 6 0.6289 -5.4826 -1.0812 13 7 -0.2299 -6.4152 -0.6084 14 6 -0.9684 -7.3896 -1.4155 15 1 -1.2586 -8.2516 -0.8147 16 6 -2.2066 -6.7353 -2.0835 17 6 -2.4235 -7.6042 -3.3404 18 7 -1.1456 -8.2674 -3.6383 19 6 -0.9255 -9.1306 -4.6495 20 8 0.1511 -9.6878 -4.7502 21 6 -1.9860 -9.3947 -5.6356 22 6 -3.3282 -8.8745 -5.5200 23 6 -4.1165 -9.2400 -6.5240 24 16 -3.2381 -10.2454 -7.6632 25 6 -1.8008 -10.1490 -6.7521 26 6 -0.1429 -7.8266 -2.6513 27 7 -0.2822 -6.3028 0.6727 28 7 0.4869 -5.3498 1.0663 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7145 0.8895 32 1 2.6847 -3.7145 -0.8905 33 1 0.8996 -5.3138 -2.1131 34 1 -3.0724 -6.7852 -1.4233 35 1 -1.9943 -5.7029 -2.3614 36 1 -2.7200 -6.9766 -4.1807 37 1 -3.1920 -8.3517 -3.1439 38 1 -3.6571 -8.2520 -4.7011 39 1 -5.1537 -8.9572 -6.6260 40 1 -0.8694 -10.6234 -7.0241 41 1 0.5215 -8.6508 -2.3916 42 1 0.4295 -6.9854 -3.0419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098608225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:57 Heat of formation + Delta-G solvation = 115.212962 kcal Electronic energy + Delta-G solvation = -26804.898362 eV Core-core repulsion = 22914.427024 eV Total energy + Delta-G solvation = -3890.471338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.33871 -41.50596 -39.05364 -37.82964 -36.83326 -35.27001 -33.69574 -31.99733 -31.65576 -30.71392 -30.31911 -27.74607 -26.61520 -24.89443 -24.61790 -24.08820 -22.34496 -21.66833 -21.53008 -20.46368 -19.39527 -18.97118 -18.45579 -17.41418 -17.15202 -17.13568 -16.63335 -16.42902 -16.03130 -15.73328 -15.53818 -15.13173 -15.01719 -14.73252 -14.36446 -14.28916 -14.12605 -13.82499 -13.67318 -13.58645 -13.53414 -13.09196 -12.95344 -12.78904 -12.69148 -12.56956 -12.11909 -12.09023 -11.90175 -11.84907 -11.74471 -11.23450 -11.01821 -10.94967 -10.25882 -10.12321 -9.84041 -9.41555 -9.01282 -7.92708 -5.22889 -0.23293 0.53614 0.58151 0.92196 0.96441 1.13414 1.43545 1.51593 1.52837 1.61649 1.90424 2.20041 2.60040 2.88780 3.18454 3.33845 3.41981 3.61426 3.63701 3.78190 3.87688 3.91349 4.02614 4.17965 4.23360 4.31025 4.34838 4.45513 4.49070 4.53758 4.57632 4.72767 4.81551 4.87214 4.88926 5.00110 5.10998 5.14248 5.16846 5.26940 5.52004 5.61252 6.20478 6.27217 6.90472 7.34240 7.47194 8.04945 8.31303 9.31143 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.001999 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.785520 B =14000.841569 C =14779.282678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.738 5.738 10 C 0.234 3.766 11 C -0.031 4.031 12 C -0.022 4.022 13 N -0.274 5.274 14 C 0.129 3.871 15 H 0.145 0.855 16 C -0.137 4.137 17 C 0.096 3.904 18 N -0.608 5.608 19 C 0.595 3.405 20 O -0.582 6.582 21 C -0.182 4.182 22 C -0.139 4.139 23 C -0.228 4.228 24 S 0.228 5.772 25 C -0.199 4.199 26 C 0.103 3.897 27 N -0.102 5.102 28 N -0.294 5.294 29 H 0.251 0.749 30 H 0.372 0.628 31 H 0.030 0.970 32 H 0.061 0.939 33 H 0.219 0.781 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.189 0.811 39 H 0.199 0.801 40 H 0.167 0.833 41 H 0.087 0.913 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.638 -24.548 -17.939 32.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.375 4.375 8 H 0.101 0.899 9 N -0.381 5.381 10 C 0.106 3.894 11 C -0.169 4.169 12 C -0.173 4.173 13 N -0.068 5.068 14 C 0.027 3.973 15 H 0.163 0.837 16 C -0.176 4.176 17 C -0.025 4.025 18 N -0.341 5.341 19 C 0.385 3.615 20 O -0.463 6.463 21 C -0.201 4.201 22 C -0.167 4.167 23 C -0.363 4.363 24 S 0.494 5.506 25 C -0.338 4.338 26 C -0.021 4.021 27 N -0.081 5.081 28 N -0.161 5.161 29 H 0.060 0.940 30 H 0.203 0.797 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.236 0.764 34 H 0.138 0.862 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.206 0.794 39 H 0.216 0.784 40 H 0.185 0.815 41 H 0.106 0.894 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.947 -26.089 -18.085 34.283 hybrid contribution 1.222 2.023 0.687 2.461 sum -11.726 -24.066 -17.398 31.928 Atomic orbital electron populations 1.69843 1.06782 1.26078 1.59494 1.25624 0.96420 1.01263 1.03594 0.85071 0.77609 0.79084 0.77555 1.20987 1.22462 1.19372 1.19686 0.91775 0.84805 1.41241 0.89883 1.42482 1.05493 1.00577 1.89515 1.18973 0.90390 0.80344 0.99649 1.22243 1.03785 1.01322 0.89597 1.23616 0.97425 0.93797 1.02474 1.47302 1.29488 1.24066 1.05901 1.22975 0.92214 0.90951 0.91127 0.83688 1.23221 0.97452 1.00187 0.96733 1.22808 0.85725 0.96575 0.97411 1.48047 1.12989 1.44427 1.28648 1.17648 0.86676 0.77295 0.79890 1.90800 1.28032 1.51824 1.75651 1.20153 0.95428 1.06735 0.97750 1.22251 0.90362 1.02170 1.01887 1.26017 1.05893 1.05347 0.99050 1.83096 0.97465 1.46423 1.23651 1.25802 1.05951 1.02786 0.99268 1.22385 0.91511 1.01472 0.86723 1.78183 1.19601 1.16732 0.93560 1.75050 1.07910 1.05483 1.27690 0.94040 0.79705 0.95229 0.92118 0.76446 0.86232 0.89667 0.87632 0.86905 0.79436 0.78381 0.81504 0.89416 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.35 13.06 21.65 0.28 -60.06 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.74 -38.79 5.59 -347.18 -1.94 -40.74 16 10 C 0.23 9.85 6.82 85.63 0.58 10.44 16 11 C -0.03 -1.17 6.61 41.59 0.28 -0.90 16 12 C -0.02 -0.61 10.60 83.49 0.88 0.27 16 13 N -0.27 -7.01 3.38 -320.57 -1.08 -8.10 16 14 C 0.13 2.04 4.08 46.39 0.19 2.23 16 15 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 16 C -0.14 -1.48 6.64 31.79 0.21 -1.27 16 17 C 0.10 0.73 4.91 86.73 0.43 1.16 16 18 N -0.61 -9.17 3.33 -815.90 -2.71 -11.89 16 19 C 0.59 12.24 7.81 86.60 0.68 12.91 16 20 O -0.58 -16.87 16.97 -4.15 -0.07 -16.95 16 21 C -0.18 -2.83 5.96 -19.87 -0.12 -2.95 16 22 C -0.14 -1.21 8.86 22.67 0.20 -1.01 16 23 C -0.23 -1.42 11.12 66.64 0.74 -0.67 16 24 S 0.23 1.81 23.02 -56.49 -1.30 0.51 16 25 C -0.20 -2.86 10.53 67.30 0.71 -2.15 16 26 C 0.10 1.69 6.36 86.85 0.55 2.24 16 27 N -0.10 -3.48 13.16 37.02 0.49 -2.99 16 28 N -0.29 -12.00 12.41 -48.60 -0.60 -12.61 16 29 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.37 21.24 7.66 -92.71 -0.71 20.53 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.22 4.61 7.01 -2.91 -0.02 4.59 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.11 0.54 6.78 -2.39 -0.02 0.52 16 37 H 0.11 0.32 6.79 -2.39 -0.02 0.31 16 38 H 0.19 0.66 3.80 -2.91 -0.01 0.65 16 39 H 0.20 0.07 8.06 -2.91 -0.02 0.05 16 40 H 0.17 2.56 8.03 -2.91 -0.02 2.53 16 41 H 0.09 1.64 7.99 -2.38 -0.02 1.62 16 42 H 0.09 1.43 6.38 -2.39 -0.02 1.42 16 Total: -1.00 -81.93 366.93 2.10 -79.83 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.37 Total: 21.21 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 6.64 Total: 3.41 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -5.57 Total: -136.38 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.07 Total: -16.95 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.30 Total: 0.51 kcal Total: -81.93 2.10 -79.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098608225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.045 kcal (2) G-P(sol) polarization free energy of solvation -81.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds