Wall clock time and date at job start Wed Apr 1 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.32588 * 119.17318 * 357.32760 * 3 2 1 5 5 C 1.32327 * 120.93922 * 179.97438 * 4 3 2 6 6 C 1.38299 * 119.28521 * 359.74762 * 5 4 3 7 7 C 1.39778 * 118.48338 * 0.51664 * 6 5 4 8 8 N 1.38560 * 120.48831 * 179.76195 * 7 6 5 9 9 C 1.48529 * 111.00325 * 62.32663 * 8 7 6 10 10 C 1.54943 * 103.23110 * 159.72035 * 9 8 7 11 11 C 1.54593 * 102.91873 * 322.58517 * 10 9 8 12 12 C 1.47906 * 110.99896 * 179.71964 * 8 7 6 13 13 H 1.09004 * 109.91554 * 333.50926 * 12 8 7 14 14 C 1.53003 * 109.91763 * 94.80012 * 12 8 7 15 15 N 1.46496 * 109.47252 * 304.04564 * 14 12 8 16 16 C 1.34774 * 120.00256 * 179.97438 * 15 14 12 17 17 O 1.21281 * 120.00152 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00023 * 179.97438 * 16 15 14 19 19 S 1.81001 * 109.46873 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99802 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99888 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00031 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99659 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99945 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47282 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47121 * 120.00068 * 24 22 20 27 27 H 1.48499 * 109.47315 * 240.00075 * 24 22 20 28 28 N 1.32579 * 119.16953 * 177.35394 * 3 2 1 29 29 H 1.07993 * 120.35347 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.75722 * 180.25708 * 6 5 4 31 31 H 1.08995 * 110.67216 * 41.28522 * 9 8 7 32 32 H 1.09004 * 110.80922 * 278.21699 * 9 8 7 33 33 H 1.08999 * 110.72722 * 204.22642 * 10 9 8 34 34 H 1.09004 * 110.87493 * 81.01227 * 10 9 8 35 35 H 1.09005 * 110.30819 * 263.04149 * 11 10 9 36 36 H 1.08998 * 110.39751 * 140.91741 * 11 10 9 37 37 H 1.09000 * 109.46761 * 64.04447 * 14 12 8 38 38 H 1.08995 * 109.47283 * 184.04365 * 14 12 8 39 39 H 0.97006 * 119.99741 * 359.97438 * 15 14 12 40 40 H 1.08996 * 109.47576 * 300.00554 * 18 16 15 41 41 H 1.09005 * 109.46926 * 60.00247 * 18 16 15 42 42 H 0.97001 * 119.99392 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2148 -1.1555 0.0540 5 6 4.5375 -1.1957 0.0554 6 6 5.2503 -0.0121 -0.0057 7 6 4.5411 1.1913 -0.0560 8 7 5.2133 2.4016 -0.1130 9 6 6.0290 2.4997 -1.3504 10 6 6.2547 4.0247 -1.5064 11 6 4.9060 4.6227 -1.0445 12 6 4.2630 3.5338 -0.1658 13 1 3.3214 3.2079 -0.6078 14 6 4.0209 4.0772 1.2438 15 7 3.5539 2.9932 2.1116 16 6 3.2752 3.2394 3.4070 17 8 3.4106 4.3586 3.8543 18 6 2.7942 2.1244 4.2994 19 16 2.5079 2.7672 5.9670 20 6 1.9698 1.2961 6.7738 21 1 1.9044 0.3703 6.2214 22 6 1.6301 1.3270 8.1193 23 7 1.7094 2.4554 8.7923 24 14 1.0590 -0.2325 8.9744 25 1 1.0569 -1.3566 8.0041 26 1 1.9806 -0.5484 10.0951 27 1 -0.3139 -0.0324 9.5038 28 7 3.2137 1.1574 -0.0534 29 1 5.0546 -2.1427 0.0992 30 1 6.3303 -0.0174 -0.0102 31 1 5.4811 2.1026 -2.2049 32 1 6.9798 1.9806 -1.2297 33 1 6.4540 4.2807 -2.5470 34 1 7.0674 4.3647 -0.8645 35 1 4.2726 4.8370 -1.9054 36 1 5.0719 5.5293 -0.4627 37 1 4.9506 4.4852 1.6405 38 1 3.2663 4.8628 1.2058 39 1 3.4452 2.0981 1.7537 40 1 1.8643 1.7169 3.9028 41 1 3.5483 1.3382 4.3372 42 1 1.4716 2.4770 9.7325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100787421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:22 Heat of formation + Delta-G solvation = 76.308611 kcal Electronic energy + Delta-G solvation = -27594.296078 eV Core-core repulsion = 23702.137721 eV Total energy + Delta-G solvation = -3892.158357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14910 -39.90714 -38.74528 -36.92090 -34.72666 -34.49392 -33.30915 -32.39344 -30.84064 -30.66629 -28.82826 -26.27879 -25.56117 -25.21836 -24.30240 -22.17080 -21.00664 -20.29754 -19.98744 -18.19651 -17.74798 -17.40140 -16.77098 -16.20540 -15.97314 -15.78332 -15.43283 -15.04808 -14.88606 -14.77058 -14.53623 -13.98543 -13.84985 -13.68934 -13.41662 -13.29279 -13.10067 -13.05839 -12.85894 -12.56170 -12.23414 -11.89072 -11.85739 -11.72478 -11.55706 -11.32981 -11.06779 -11.03850 -10.97824 -10.72202 -10.48795 -9.96664 -9.77145 -9.35495 -9.13446 -9.04199 -8.76431 -8.19638 -6.45869 -6.18384 -3.88344 -0.13379 0.41336 1.99566 2.27668 2.52982 2.91313 3.09889 3.17928 3.24297 3.30983 3.35404 3.38529 3.70421 3.74676 3.98569 4.08460 4.19135 4.23848 4.35505 4.46430 4.60609 4.62619 4.75706 4.83074 4.97962 5.10830 5.16737 5.22329 5.25804 5.29457 5.42184 5.49967 5.54611 5.64202 5.66516 5.86361 5.91079 5.93912 6.16416 6.30991 6.37100 6.71796 6.93939 7.29473 7.63490 7.79943 8.39113 8.69060 9.27119 10.89115 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011021 B = 0.003195 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.071628 B = 8762.806995 C =10200.497182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C 0.277 3.723 3 C 0.431 3.569 4 N -0.498 5.498 5 C 0.174 3.826 6 C -0.210 4.210 7 C 0.355 3.645 8 N -0.450 5.450 9 C 0.045 3.955 10 C -0.122 4.122 11 C -0.126 4.126 12 C 0.049 3.951 13 H 0.099 0.901 14 C 0.140 3.860 15 N -0.733 5.733 16 C 0.530 3.470 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.056 6.056 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 N -0.529 5.529 29 H 0.186 0.814 30 H 0.162 0.838 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.392 0.608 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.873 -3.302 -27.633 30.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.024 5.024 2 C -0.043 4.043 3 C 0.160 3.840 4 N -0.215 5.215 5 C 0.011 3.989 6 C -0.235 4.235 7 C 0.114 3.886 8 N -0.168 5.168 9 C -0.080 4.080 10 C -0.160 4.160 11 C -0.165 4.165 12 C -0.058 4.058 13 H 0.117 0.883 14 C 0.015 3.985 15 N -0.390 5.390 16 C 0.316 3.684 17 O -0.394 6.394 18 C -0.303 4.303 19 S 0.171 5.829 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 N -0.252 5.252 29 H 0.203 0.797 30 H 0.179 0.821 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.229 0.771 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.764 -1.256 -26.265 28.412 hybrid contribution 0.349 -2.816 -0.510 2.883 sum 11.113 -4.072 -26.775 29.274 Atomic orbital electron populations 1.81299 1.10759 1.05659 1.04710 1.23910 0.90296 0.94448 0.95642 1.16995 0.87857 0.84598 0.94507 1.68316 1.10914 1.27908 1.14412 1.23222 0.88121 0.99090 0.88511 1.22685 1.03642 0.92242 1.04978 1.20224 0.87163 0.91999 0.89191 1.61735 1.19888 0.99511 1.35650 1.23398 0.97784 0.98780 0.88036 1.22532 0.98195 0.92914 1.02401 1.22453 0.96276 0.98338 0.99397 1.22900 0.95985 0.89616 0.97273 0.88281 1.21290 1.00097 0.90015 0.87093 1.46113 1.69900 1.12884 1.10078 1.20261 0.76610 0.89946 0.81563 1.90685 1.51098 1.23523 1.74048 1.23516 1.03402 1.00056 1.03350 1.85342 1.86548 1.15255 0.95805 1.22915 1.51726 0.95899 0.97747 0.90990 1.24986 0.95060 0.97232 0.96290 1.70033 1.45512 1.25354 1.09380 0.86123 0.78416 0.81816 0.79205 1.19618 1.20535 1.20535 1.68093 1.09515 1.29539 1.18083 0.79684 0.82084 0.92062 0.88353 0.89898 0.89731 0.90362 0.89506 0.90985 0.90837 0.77083 0.89706 0.89718 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.35 -5.02 18.54 41.84 0.78 -4.24 16 2 C 0.28 3.54 15.74 -22.47 -0.35 3.18 16 3 C 0.43 4.72 7.40 -159.18 -1.18 3.55 16 4 N -0.50 -4.79 10.32 -12.69 -0.13 -4.92 16 5 C 0.17 1.06 11.29 -17.32 -0.20 0.86 16 6 C -0.21 -1.23 9.57 -38.98 -0.37 -1.60 16 7 C 0.35 2.98 5.00 -154.88 -0.77 2.21 16 8 N -0.45 -3.47 4.83 -161.60 -0.78 -4.25 16 9 C 0.04 0.20 6.08 -1.90 -0.01 0.19 16 10 C -0.12 -0.48 7.06 -24.87 -0.18 -0.66 16 11 C -0.13 -0.71 6.57 -25.37 -0.17 -0.88 16 12 C 0.05 0.43 2.60 -66.64 -0.17 0.25 16 13 H 0.10 0.94 6.53 -51.93 -0.34 0.60 16 14 C 0.14 1.74 5.15 -4.04 -0.02 1.71 16 15 N -0.73 -11.44 5.40 -60.30 -0.33 -11.76 16 16 C 0.53 10.89 7.85 -10.98 -0.09 10.80 16 17 O -0.52 -12.40 15.86 5.56 0.09 -12.31 16 18 C -0.15 -3.39 6.16 36.01 0.22 -3.17 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.53 -15.82 9.50 30.94 0.29 -15.52 16 21 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 22 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -26.73 13.22 55.49 0.73 -25.99 16 24 Si 0.92 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 N -0.53 -5.48 6.29 -11.84 -0.07 -5.56 16 29 H 0.19 0.43 8.06 -52.49 -0.42 0.00 16 30 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.06 0.24 7.99 -51.93 -0.42 -0.17 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.50 7.69 -51.93 -0.40 0.10 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.39 5.65 4.80 -40.82 -0.20 5.45 16 40 H 0.08 1.82 8.14 -51.92 -0.42 1.39 16 41 H 0.08 1.76 8.14 -51.91 -0.42 1.34 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -37.76 375.73 -9.50 -47.25 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.12 Total: -0.09 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -3.09 Total: 2.98 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.20 Total: -56.73 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.76 -9.50 -47.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100787421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.562 kcal (2) G-P(sol) polarization free energy of solvation -37.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds